Engineer, Cawas B.; Ghassemian, Majid; Anderson, Jeffrey C.; Peck, Scott C.; Hu, Honghong; Schroeder, Julian I. (2015). Data from: Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development. UC San Diego Library Digital Collections. https://doi.org/10.6075/J0TD9V7X

Data are deposited here from RNA-Seq transcriptomic experiments analyzing the Arabidopsis response to low and elevated carbon dioxide growing conditions. BAM, BAI and TDF files are uploaded from three independent biological replicates that we conducted for wild type and carbonic anhydrase mutant seedlings. Each set of replicates includes >1000 seedlings per sample and both genotypes were grown at low and elevated CO2 (hence 4 samples per set of replicates). Sampling was done at 5 days after germination to capture early signaling events as seedlings were adapting to the CO2 stimulus.

This project was funded by grants from the National Science Foundation (MCB0918220 and MCB1414339 to J.I.S. and IOS-1025837 to S.C.P.) and the National Institutes of Health (GM060396-ES010337 to J.I.S.), a BAYER-UC Discovery grant (J.I.S.) and a seed grant from the UCSD-SDCSB (GM085764) Systems Biology Center (C.B.E.). A grant from the Division of Chemical Sciences, Geosciences, and Biosciences, Office of Basic Energy Sciences of the US Department of Energy (DE-FG02-03ER15449) to J.I.S. funded complementation and localization analyses.

• 2012 to 2013

• 2015

• Schroeder, Julian

• Anderson, Jeffrey
• Engineer, Cawas
• Ghassemian, Majid
• Hu, Honghong
• Peck, Scott

• Arabidopsis thaliana
• Brassicaceae
• Gunneridae

• CO2
• Cotyledon
• RNA-Seq
• Thale cress
• Transcriptomics

Doi: https://doi.org/10.6075/J0TD9V7X

Primary associated publication

• Engineer, C.B., Ghassemian, M., Anderson, J.C., Peck, S.C., Hu, H., and Schroeder, J.I. (2014) Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development. Nature 513, 246-250. PubMed article: https://www.ncbi.nlm.nih.gov/pubmed/25043023. https://doi.org/10.1038/nature13452

Source data

• Raw data at NCBI: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA218542

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2023-08-25