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Plant Ionomics: Biological Language of Ions

Yıl 2023, Cilt: 37 Sayı: 1, 263 - 288, 01.06.2023

Berna Baş

https://doi.org/10.20479/bursauludagziraat.1133666

Öz

Ionomics is a novel increasingly expanding multidisciplinary field and works quantification, mapping
of nutritional elements biography of living organisms and simultaneuos inter-elemental interaction into elements network system in response to external stimulants which are caused to eventually changes of physiology, development and gene expression. In this perspective, ionomic vision is comrehensive functional analysis of elements and also enables strategy development to control nutritional ion homeostasis in effect of metabolism, development, genome and ambient of organism. With this approach, elemental/ionic position of nutrient compounds in plants gives information about such as their adaptation to local and natural medium, disease status, disease resistant properties. This review is addressed introduction of ionomics, potential range of ionomic insights and their application areas, particularly roles in pathogenesis to disclose.

Anahtar Kelimeler

Plant ionome elemental analysis nutrient elements disease ionomy

Kaynakça

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Bitki İyonomiks: İyonların Biyolojik Dili

Yıl 2023, Cilt: 37 Sayı: 1, 263 - 288, 01.06.2023

Berna Baş

https://doi.org/10.20479/bursauludagziraat.1133666

Öz

İyonomiks giderek genişleyen, disiplinlerarası yeni bir alandır ve bir dış uyarana tepki sonucunda canlıların fizyolojisi, gelişimi ve gen ifadesinde değişimine neden olan besin elementlerinin niceliği, haritalanması ve aynı zamanda elementler ağ sisteminde elementler-arası etkileşimi çalışır. Bu perspektiften, iyonomun vizyonu elementlerin kapsamlı fonksiyonel analizidir ve organizmaların metabolizması, gelişimi, genomu ve çevresinin etkisiyle iyon dengesini kontrol etmek amacıyla stratejiler gelişimine de imkan vermektedir. Bu yaklaşımla bitkilerdeki besin maddelerinin elemental/iyonik pozisyonları bitkilerin doğal çevrelerine adaptasyonları, hastalık durumları ve hastalıklara dayanıklılık özellikleriyle ilgili bilgiler verir. Sunulan derleme iyonomiks konusunun tanıtımı, iyonomun potansiyeli ve uygulama alanları özellikle patogenezdeki rollerini ortaya koymak amacıyla ele alınmıştır.

Anahtar Kelimeler

Bitki iyonomu element analizi besin elementleri hastalık iyonomisi

Kaynakça

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  • Pita-Barbosa, A., Ricachenevsky, F.K., Wilson, M., Dottorini, T. and Salt, D.E. 2019. Transcriptional Plasticity Buffers Genetic Variation in Zinc Homeostasis. Scientific Reports, 9: 19482.
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  • Rodríguez-Jiménez, T.D.J., Ojeda-Barrios, D.L., Blanca-Macíos, F., Valdez-Cepeda, R.D. and Parra-Quezada, R. 2016. Urease y niquel en la fisiologia de las plantas. Revista Chapingo, Serie Horticultura, 22(2): 69-82.
  • Sasaki, A., Yamaji, N. and Ma, J.F. 2016. Transporters involved in mineral nutrient uptake in rice. Journal of Experimental Botany, 67: 3645-3653.
  • Satismruti, K., Senthil, N., Vellaikumar, S., Ranjani, R.V. and Raveendran, M. 2013. Plant ionomics: a platform for identifying novel gene regulating plant mineral nutrition. American Journal of Plant Sciences, 4: 1309- 1315.
  • Sebastiani, L., Scebba, F. and Tognetti, R. 2004. Heavy metal accumulation and growth responses in poplar clones Eridano (Populus deltoides × maximowiczii) and I-214 (P. × euramericana) exposed to industrial waste. Environmental and Experimental Botany, 52: 79-88.
  • Sharma, E., Jain, M. and Khurana, J.P. 2019. Differential quantitative regulation of specific gene groups and pathways under drought stress in rice. Genomics, 111(6): 1699-1712.
  • Shen, C., Yang, Y., Liu, K., Zhang, L., Guo, H., Sun, T. and Wang, H. 2016. Involvement of endogenous salicyclic acid in iron-deficiency responses in Arabidopsis. Journal of Experimental Botany, 67(14): 4179- 4193.
  • Singh, S., Parihar, P., Singh, R., Singh, V.P. and Prasad, S.M. 2016. Heavy metal tolerance in plants: role of transcriptomics, proteomics, metabolomics and ionomics. Frontiers of Plant Science, 6: 1143.
  • Singh, A., Jaiswal, A., Singh, A., Tomar, R.S. and Kumar, A. 2021. Plant ionomics: toward high-throughput nutrient profiling: Plant Nutrition and Food Security in the Era of Climate Change, Ed.: Kumar, V., Srivastava, A.K., Suprasanna, P., Elsevier/Academic Press, pp. 227-254.
  • Spann, T.M. and Schumann, A.W. 2010. Mineral nutrition contributes to plant disease and pest resistance. One of the Series of the Horticultural Sciences Department, Florida Cooperative Extension Service, Institute of Food and Agricultural Sciences, University of Florida, IFAS Extension, This document is HS1181. http://edis.ifas.ufl.edu
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  • Takahashi, R., Bashir, K., Ishimaru, Y., Nishizawa, N.K. and Nakanishi, H. 2012a. The role of heavy-metal ATPases, HMAs, in zinc and cadmium transport in rice. Plant Signaling and Behavier, 7: 1506-1607.
  • Takahashi, R., Ishimaru, Y., Shimo, H., Ogo, Y., Senoura, T., Nishizawa, N.K. and Nakanishi, H. 2012b. The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice. Plant Cell and Environment, 35: 1948-1957.
  • Terranova, M.L. and Tavares, O.A.P. 2022. The periodic table of the elements: the search for transactinides and beyond. Rendiconti Lincei-Scienze Fisiche E Naturali, 33: 1-16.
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  • Thomine, S., Wang, R., Ward, J.M., Crawford, N.M. and Schroeder, J.I. 2000. Cadmium and iron transport by members of a plant metal transporter family in Arabidopsis with homology to Nramp genes. Proceedings of the National Academy of Sciences of the United States of America, 97: 4991-4996.
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  • Usmani, M.M., Nawaz, F. and Majeed, S. 2020. Sulfate-mediated drought tolerance in maize involves regulation at physiological and biochemical levels. Scientific Reports, 10: 1147.
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  • Verret, F., Gravot, A., Auroy, P., Preveral, S., Forestier, C., Vavasseur, A. and Richaud, P. 2005. Heavy metal transport by AtHMA4 involves the N-terminal degenerated metal binding domain and the C-terminal His11 strech. FEBS Letters, 579: 1515-1522.
  • Walters, D.R. and Bingham, I.J. 2007. Influence of Nutrition on Disease Development Caused by Fungal Pathogens: Implications for Plant Disease Control. Annals of Applied Biology, 151: 307-324.
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  • Watanabe, T., Urayana, M., Shinano, T., Okada, R. and Osaki, M. 2015. Application of ionomics to plant and soil in fields under long-term fertilizer trials. SpringerPlus, 4: 781.
  • Watanabe, T., Okada, R. and Urayama, M. 2022. Differences in ionomic responses to nutrient deficiencies among plant species under field conditions. Journal of Plant Nutrition, 45(10): 1493-1503.
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  • Xuan, Y.H., Hu, Y.B., Chen, L.Q., Sosso, D., Ducat, D.C., Hou, B.H. and Frommer, W.B. 2013. Functional role of oligomerization for bacterial and plant SWEET sugar transporter family. Proceedings of the National Academy of Sciences of the United States of America, 110(39): E3685-E3694.
  • Yadeta, K.A., Elmore, J.M., Creer, A.Y., Feng, B., Franco, J.Y., Rufian, J.S., He, P., Phinney, B. and Coaker, G. 2017. A cysteine-rich protein kinase associates with a membrane immune complex and cysteine residues are required for cell death. Plant Physiology, 173: 771-787.
  • Yang, M., Lu, K., Zhao, F.J., Xie, W., Ramakrishna, P., Wang, G., Du, Q., Liang, L., Sun, C., Zhao, H., Zhang, Z., Liu, Z., Tian, J., Huang, X.Y., Wang, W., Dong, H., Hu, J., Ming, L., Xing, Y.,Wang, G., Xiao, J., Salt, D.E. and Lian, X. 2018. Genome-wide association studies reveal the genetic basis of ionomic variation in rice. The Plant Cell, 30(11): 2720-2740.
  • Yasin, N.A., Zheer, M.M., Khan, W.U., Ahmad, S.R., Ali, A. and Akram, W. 2018. The beneficial role of potassium in Cd-induced stress alleviation and growth improvement in Gladiolus grandiflora L. International Journal of Phytoremediation, 20: 274-283.
  • Yruela, I. 2005. Copper in plants. Brazilian Journal of Plant Physiology, 17: 145-156.
  • Yuan, M., Wang, S., Chu, Z., Li, X. and Xu, C. 2010. The bacterial pathogen Xanthomonas oryzae overcomes rice defenses by regulating host copper redistribution. Plant Cell, 22: 3164-3176.
  • Zhao, H., Sun, R., Albrecht, U., Padmanabhan, C., Wang, A., Coffey, M.D., Girke, T., Wang, Z., Close, T.J., Roose, M., Yokomi, R.K., Folimonova, S., Vidalakis, G., Rouse, R., Bowman, K.D. and Jin, H. 2013. Small RNA profiling reveals phosphorus deficiency as a contributing factor in symptom expression for citrus huanglongbing disease. Molecular Plant, 6(2): 301-310.
Toplam 135 adet kaynakça vardır.

Ayrıntılar

Birincil Dil Türkçe
Konular Ziraat Mühendisliği (Diğer)
Bölüm Derleme
Yazarlar

Berna Baş 0000-0003-2455-2849

Erken Görünüm Tarihi 1 Haziran 2023
Yayımlanma Tarihi 1 Haziran 2023
Gönderilme Tarihi 21 Haziran 2022
Yayımlandığı Sayı Yıl 2023 Cilt: 37 Sayı: 1

Kaynak Göster

APA Baş, B. (2023). Bitki İyonomiks: İyonların Biyolojik Dili. Bursa Uludağ Üniversitesi Ziraat Fakültesi Dergisi, 37(1), 263-288. https://doi.org/10.20479/bursauludagziraat.1133666
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