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Clark, Darren; Brown, Ian; Rees, Andrew; Somerfield, Paul J; Miller, P I (2014): The influence of ocean acidification on nitrogen regeneration and nitrous oxide production in the northwest European shelf sea [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.837515

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Abstract:
The assimilation and regeneration of dissolved inorganic nitrogen, and the concentration of N2O, was investigated at stations located in the NW European shelf sea during June/July 2011. These observational measurements within the photic zone demonstrated the simultaneous regeneration and assimilation of NH4+, NO2- and NO3-. NH4+ was assimilated at 1.82-49.12 nmol N/L/h and regenerated at 3.46-14.60 nmol N/L/h; NO2- was assimilated at 0-2.08 nmol N/L/h and regenerated at 0.01-1.85 nmol N/L/h; NO3-was assimilated at 0.67-18.75 nmol N/L/h and regenerated at 0.05-28.97 nmol N/L/h. Observations implied that these processes were closely coupled at the regional scale and that nitrogen recycling played an important role in sustaining phytoplankton growth during the summer. The [N2O], measured in water column profiles, was 10.13 ± 1.11 nmol/L and did not strongly diverge from atmospheric equilibrium indicating that sampled marine regions were neither a strong source nor sink of N2O to the atmosphere. Multivariate analysis of data describing water column biogeochemistry and its links to N-cycling activity failed to explain the observed variance in rates of N-regeneration and N-assimilation, possibly due to the limited number of process rate observations. In the surface waters of five further stations, ocean acidification (OA) bioassay experiments were conducted to investigate the response of NH4+ oxidising and regenerating organisms to simulated OA conditions, including the implications for [N2O]. Multivariate analysis was undertaken which considered the complete bioassay data set of measured variables describing changes in N-regeneration rate, [N2O] and the biogeochemical composition of seawater. While anticipating biogeochemical differences between locations, we aimed to test the hypothesis that the underlying mechanism through which pelagic N-regeneration responded to simulated OA conditions was independent of location. Our objective was to develop a mechanistic understanding of how NH4+ regeneration, NH4+ oxidation and N2O production responded to OA. Results indicated that N-regeneration process responses to OA treatments were location specific; no mechanistic understanding of how N-regeneration processes respond to OA in the surface ocean of the NW European shelf sea could be developed.
Keyword(s):
Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Entire community; Laboratory experiment; North Atlantic; Open ocean; Other metabolic rates; Pelagos; Temperate
Related to:
Clark, Darren; Brown, Ian; Rees, Andrew; Somerfield, Paul J; Miller, P I (2014): The influence of ocean acidification on nitrogen regeneration and nitrous oxide production in the northwest European shelf sea. Biogeosciences, 11(18), 4985-5005, https://doi.org/10.5194/bg-11-4985-2014
Original version:
Richier, Sophie; Achterberg, Eric Pieter; Archer, Steve; Bretherton, Laura; Brown, Ian; Clark, Darren; Dumousseaud, Cynthia; Holland, Ross J; Hopkins, Frances E; MacGilchrist, G A; Moore, C Mark; Poulton, Alex J; Rees, Andrew; Shi, T; Stinchcombe, Mark Colin; Suggett, David J; Zubkov, Mikhail V; Young, Jeremy; Tyrrell, Toby (2014): Ocean acidification impacts on Sea Surface biology and biogeochemistry in Northwest European Shelf Seas: a high-replicated shipboard approach. British Oceanographic Data Centre, Natural Environment Research Council, https://doi.org/10.5285/f44043b2-b9f0-71f2-e044-000b5de50f38
Further details:
Lavigne, Héloïse; Epitalon, Jean-Marie; Gattuso, Jean-Pierre (2014): seacarb: seawater carbonate chemistry with R. R package version 3.0. https://cran.r-project.org/package=seacarb
Funding:
Natural Environment Research Council (NERC), grant/award no. NE/H017305/1: Impacts of ocean acidification on key benthic ecosystems, communities, habitats, species and life cycles
Coverage:
Median Latitude: 52.991959 * Median Longitude: -2.776520 * South-bound Latitude: 46.202300 * West-bound Longitude: -7.083500 * North-bound Latitude: 56.787830 * East-bound Longitude: 3.158500
Date/Time Start: 2011-06-08T02:00:00 * Date/Time End: 2011-07-02T02:00:00
Minimum Elevation: -12.0 m * Maximum Elevation: -5.0 m
Event(s):
D366_E1 * Latitude: 56.787830 * Longitude: -7.083500 * Date/Time: 2011-06-08T02:00:00 * Elevation: -6.0 m * Method/Device: Experiment (EXP)
D366_E2 * Latitude: 52.470500 * Longitude: -5.067500 * Date/Time: 2011-06-14T02:00:00 * Elevation: -5.0 m * Method/Device: Experiment (EXP)
D366_E3 * Latitude: 46.202300 * Longitude: -7.054100 * Date/Time: 2011-06-21T02:00:00 * Elevation: -10.0 m * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-10-28.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Event labelEvent
2IdentificationIDClark, Darrenbioassay
3IdentificationIDClark, Darrenbioassay Bottle
4TreatmentTreatClark, DarrenpCO2 (µatm)
5Temperature, waterTemp°CClark, Darren
6SalinitySalClark, Darren
7Time in hoursTimehClark, Darren
8Carbon, inorganic, dissolvedDICµmol/kgDumousseaud, CynthiaCoulometric titration
9Alkalinity, totalATµmol/kgDumousseaud, CynthiaPotentiometric titration
10pHpHMacGilchrist, G ACalculated using CO2SYStotal scale
11Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmMacGilchrist, G ACalculated using CO2SYS
12Bicarbonate ion[HCO3]-µmol/kgMacGilchrist, G ACalculated using CO2SYS
13Carbonate ion[CO3]2-µmol/kgMacGilchrist, G ACalculated using CO2SYS
14Calcite saturation stateOmega CalMacGilchrist, G ACalculated using CO2SYS
15Aragonite saturation stateOmega ArgMacGilchrist, G ACalculated using CO2SYS
16Nitrate[NO3]-µmol/lStinchcombe, Mark Colin
17FlagFlagStinchcombe, Mark ColinWOCE
18SilicateSi(OH)4µmol/lStinchcombe, Mark Colin
19FlagFlagStinchcombe, Mark ColinWOCE
20Phosphate[PO4]3-µmol/lStinchcombe, Mark Colin
21Ammonium[NH4]+µmol/lClark, Darrenmean
22Ammonium, standard deviation[NH4]+ std dev±Clark, Darren
23Ammonium regeneration rate[NH4]+ reg ratenmol/l/hClark, Darrenmean
24Ammonium regeneration rate, standard deviation[NH4]+ reg rate±Clark, Darren
25Ammonia, oxidation rateNH3/[NH4]+ ORµmol/l/hClark, Darren
26Ammonia, oxidation rate, standard deviationNH3/[NH4]+ OR±Clark, Darren
27Nitrous oxide, dissolvedN2Onmol/lClark, Darren
28BacteriaBact#/mlHolland, Ross Jtotal
29Nanoflagellates, heterotrophicHNF#/mlHolland, Ross J
30Dimethyl sulfideDMSµmol/lHopkins, Frances E
31DimethylsulfoniopropionateDMSPnmol/lHopkins, Frances Etotal
32Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
34Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
12526 data points

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