Persistent Identifier
|
doi:10.15454/XL23BS |
Publication Date
|
2020-12-09 |
Title
| Long term monitoring of evolutionary changes in oak stands |
Link to data
| https://treepop.pierroton.inra.fr/ |
Point of Contact
|
Use email button above to contact.
Kremer, Antoines (INRAE) |
Author
| Alexandre, Hermine (INRA - Institut National de la Recherche Agronomique) - ORCID: 0000-0003-0095-1634
Truffaut, Laura (INRA - Institut National de la Recherche Agronomique)
Klein, Etienne (INRAE) - ORCID: 0000-0003-4677-0775
Ducousso, Alexis (INRAE) - ORCID: 0000-0002-8833-0455
Chancerel, Emilie (INRAE)
Lesur, Isabelle (HELIX VENTURE)
Dencausse, Benjamin (INRAE)
Louvet, Jean-Marc (INRAE)
Nepveu, Gérard (INRAE)
Torres-Ruiz, José M. (INRAE) - ORCID: 0000-0003-1367-7056
Lagane, Frédéric (INRAE)
Musch, Brigitte (INRAE, ONF)
Delzon, Sylvain (INRAE) - ORCID: 0000-0003-3442-1711
Kremer, Antoine (INRAE) - ORCID: 0000-0002-3372-3235 |
Description
| This dataset is composed of 4 files :
- The file EcologyG1&G2 provides ecological data assessed on the level of each tree (G1 and G2) and derived from a floristic survey. Details about the assessments of the ecological data are provided in Truffaut et al (2017, Article p. 127 and Supplemental material Methods S2)
- The file GenotypesSNP_G1_G2 comprises the SNP data of G1 and G2 trees, their geographical coordinates and species assignation. This data set was used to estimate fitness, and for performing parentage analysis.
- The file Phenotypes_G1 comprises all the phenotypic data of the trees of the G1 generation.
- The file Phenotypes_G2 comprises all the phenotypic data of the trees of the G2 generation.
(2020-07-28) |
Subject
| Earth and Environmental Sciences; Medicine, Health and Life Sciences; Agricultural Sciences |
Topic Classification
| Plant Breeding and Plant Products
Genetic Resource
Forests and Forest Products
Climate |
Data Type
| Dataset |
Related Publication
| Alexandre H, Truffaut L, Klein E, Ducousso A, Chancerel E, Lesur I, Dencausse B, Louvet JM, Nepveu G, Torres-Ruiz JM, Lagane F, Musch B, Delzon S, Kremer A (2020). How does contemporary selection shape oak phenotypes?
Alexandre H, Truffaut L, Ducousso A, Louvet JM, Nepveu G, Torres-Ruiz JM, Lagane F, Firmat C, Musch B, Delzon S, Kremer A 2020. In situ estimation of genetic variation of functional and ecological traits in Q. petraea and Q.robur. Tree Genetics & Genomes 16 : 32 doi: 10.1007/s11295-019-1407-9 https://doi.org/10.1007/s11295-019-1407-9
Lesur I, Alexandre, H, Boury C, Chancerel E, Plomion C, Kremer A 2018. Development of target sequence capture and estimation of genomic relatedness in a mixed oak stand. Frontiers in Plant Science.9: 996 doi: 10.3389/fpls.2018.00996 https://dx.doi.org/10.3389%2Ffpls.2018.00996
Truffaut, L., Chancerel, E., Ducousso, A., Dupouey, J. L., Badeau, V., Ehrenmann, F., & Kremer, A. (2017). Fine-scale species distribution changes in a mixed oak stand over two successive generations. New Phytologist, 215 (1), 126-139. doi:10.1111/nph.14561 doi: 10.1111/nph.14561 https://doi.org/10.1111/nph.14561
Truffaut L, Chancerel E, Ducousso A, Dupouey JL, Badeau V, Ehrenmann F, Kremer A. 2017. Fine scale species distribution changes in a mixed oak stand over two successive generations. New Phytologist 215: 126-139 doi: 10.1111/nph.14561 https://doi.org/10.1111/nph.14561
Guichoux E, Garnier-Géré P, Lagache L, Lang T, Boury C, Petit RJ. 2013. Outlier loci highlight the direction of introgression in oaks. Molecular Ecology 22: 450-462. doi: 10.1111/mec.12125 https://doi.org/10.1111/mec.12125
Lepoittevin C, Bodénès C, Chancerel E, Villate L, Lang T, Lesur I, Boury C, Ehrenmann F, Zelenica D, Boland A et al. 2015. Single-nucleotide polymorphism discovery and validation in high density SNP array for genetic analysis in European white oaks. Molecular Ecology Resources 15: 1446-1459 doi: 10.1111/1755-0998.12407 https://doi.org/10.1111/1755-0998.12407 |
Depositor
| Ehrenmann, Francois |
Deposit Date
| 2020-07-31 |