Persistent Identifier
|
doi:10.15454/95JUTK |
Publication Date
|
2018-10-08 |
Title
| FRIM - Fruit Integrative Modelling |
Link to data
| https://pmb-bordeaux.fr/dataexplorer/?ds=frim1 |
Point of Contact
|
Use email button above to contact.
Jacob, Daniel (INRA - Institut National de la Recherche Agronomique) |
Author
| Bénard, Camille (INRA - Institut National de la Recherche Agronomique)
Biais, Benoit (INRA - Institut National de la Recherche Agronomique)
Ballias, Patricia (INRA - Institut National de la Recherche Agronomique)
Beauvoit, Bertrand (INRA - Institut National de la Recherche Agronomique)
Bernillon, Stéphane (INRA - Institut National de la Recherche Agronomique)
Cabasson, Cécile (INRA - Institut National de la Recherche Agronomique)
Colombié, Sophie (INRA - Institut National de la Recherche Agronomique)
Deborde, Catherine (INRA - Institut National de la Recherche Agronomique)
Gaillard, Pierre (Invenio - Ste Livrade, France)
Génard, Michel (INRA - Institut National de la Recherche Agronomique)
Gibon, Yves (INRA - Institut National de la Recherche Agronomique)
Jacob, Daniel (INRA - Institut National de la Recherche Agronomique) - ORCID: 0000-0002-6687-7169
Maucourt, Mickael (INRA - Institut National de la Recherche Agronomique)
Moing, Annick (INRA - Institut National de la Recherche Agronomique)
Vercambre, Gilles (INRA - Institut National de la Recherche Agronomique) |
Producer
| INRA UMR 1332 BFP - Metabolism Team https://www6.bordeaux-aquitaine.inra.fr/bfp_eng/Research/Metabolism-Team |
Production Date
| 2010 |
Production Location
| INVENIO, Ste Livrade, France |
Description
| The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemistry, and biotechnology. |
Language
| English |
Subject
| Medicine, Health and Life Sciences; Computer and Information Science |
Keyword
| tomato (Solanum lycopersicum) https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=4081
fruit (fruit) http://purl.obolibrary.org/obo/PO_0009001
fruit development stage http://purl.obolibrary.org/obo/PO_0001002
Experimental measurement https://ifb-elixirfr.github.io/edam-browser/#http://edamontology.org/data_3108 |
Topic Classification
| Plant Health and Pathology
Omics
Information management
Computer science |
Data Type
| Dataset |
Data Origin
| experimental data |
Life cycle step
| Study design; Data collection |
Related Publication
| Biais B, Bénard C, Beauvoit B, Colombié S, Prodhomme D, Ménard G, Bernillon S, Gehl B, Gautier H, Ballias P, Mazat J-P, Sweetlove L, Génard M, Gibon Y. 2014. Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism. Plant Physiology 164, 1204-1221. doi: 10.1104/pp.113.231241 https://doi.org/10.1104/pp.113.231241
Beauvoit B., Colombié S., Monier A., Andrieu M.-H., Biais B., Bénard C., Chéniclet C., Dieuaide-Noubhani M., Nazaret C., Mazat J.-P., Gibon Y. (2014). Model-assisted analysis of sugar metabolism throughout tomato fruit development reveals enzyme and carrier properties in relation to vacuole expansion. Plant Cell 26: 3224–3242 doi: 10.1105/tpc.114.127761 https://doi.org/10.1105/tpc.114.127761
Bénard C., Bernillon S., Biais B., Osorio S., Maucourt M., Ballias P., Deborde C., Colombié S., Cabasson C., Jacob D., Vercambre G., Gautier H., Rolin D., Génard M., Fernie A., Gibon Y., Moing A. 2015 Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships. Journal of Experimental Botany Vol. 66, No. 11 pp. 3391–3404 doi: 10.1093/jxb/erv151 https://doi.org/10.1093/jxb/erv151
Colombié S, Nazaret, Bénard C, Biais B, Mengin V, Solé M, Fouillen L, Dieuaide- Noubhani M, Mazat J, Beauvoit B, Gibon Y. 2015. Modelling central metabolic fluxes by constraint-based optimization reveals metabolic reprogramming of developing tomato fruit. The Plant Journal 81, 24-39. doi: 10.1111/tpj.12685 https://doi.org/10.1111/tpj.12685
Isma Belouah, Christine Nazaret, Pierre Pétriacq, Sylvain Prigent, Camille Bénard, Virginie Mengin, Mélisande Blein-Nicolas, Alisandra K. Denton, Thierry Balliau, Ségolène Augé, Olivier Bouchez, Jean-Pierre Mazat, Mark Stitt, Björn Usadel, Michel Zivy, Bertrand Beauvoit, Yves Gibon, Sophie Colombié. 2019. Modeling Protein Destiny in Developing Fruit. Plant Physiology 180, 1709–1724 doi: 10.1104/pp.19.00086 https://doi.org/10.1104/pp.19.00086
Daniel Jacob (2020) Data Preparation Protocol for ODAM Compliance. protocols.io doi: 10.17504/protocols.io.betcjeiw https://doi.org/10.17504/protocols.io.betcjeiw
Daniel Jacob. Modeling the growth of tomato fruits based on enzyme activity profiles.. 2020. ⟨hal-02611223⟩ https://hal.inrae.fr/hal-02611223 |
Related Dataset
| PXD012877 https://www.ebi.ac.uk/pride/archive/projects/PXD012877 |
Funding Information
| Agence Nationale de la Recherche: ANR-09-SYSB-003 |
Depositor
| Jacob, Daniel |
Deposit Date
| 2018-10-08 |