Mutational landscape of SARS-CoV-2 genome in Turkey and impact of mutations on spike protein structure
Fig 7
RMSF analysis over 20 ns trajectory.
Per residue RMSF values averaged over 20 ns trajectory for (A) spike trimeric protein and its individual (B) Chain I, (C) Chain II. Reference trimeric spike protein 3D-surface rendering from side and bottom, showing the boxed regions, are shown in the inset with the same colors (snapshots exhibit the conformation at T = 20 ns), (D) Chain III. The black box indicates the Receptor Binding Domain residues. The cyan box indicates a highly fluctuating region in all three chains.