Peer Review History
Original SubmissionMay 26, 2021 |
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PONE-D-21-17398 Molecular characterization of Salmonella spp. and Listeria monocytogenes strains from biofilms in cattle and poultry slaughterhouses located in the Federal District and State of Goiás, Brazil PLOS ONE Dear Dr. Agostinho Davanzo, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. There are a number of questions on methodology, data interpretation and conclusions. Please address all comments point by point. Please submit your revised manuscript by Aug 15 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Additional Editor Comments (if provided): The reviewers have raised a number of important questions regarding rationale, methodology, data interpretation and conclusions. Please address all the reviewer comments point by point. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: No ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors characterized two important food- borne pathogens isolated from cattle and poultry, and the study has provided interesting findings. However, the research findings are not presented in a better shape; hence, a couple of suggestions are given below for its improvement. 1. The entire manuscript has to be thoroughly re-drafted with the help of an English-speaking native researcher to ensure its improved drafting in terms of grammatical mistakes and better readability. Overall, the discussion need to be improved and comparative analysis of the assays need to be performed to draw conclusive findings. 2. Line. 133 mentions the usage of UMV broth, instead of UVM. Expand the mnemonics, while used for the first time. 3. In the antibiogram assay, mention the medium used. The quality control strains used in this assay to be mentioned. 4. The concentration of bacterial inoculum used in the in vitro biofilm assay to be mentioned in the section. How were the test isolates compared or graded for biofilm formation? 5. The expression of antibiogram (Table 3) should be modified. As there exist countable isolates, it is suggested to present an isolate- wise susceptibility pattern in the table to get a better picture. Similarly, a comparative PCR- based antibiotic susceptibility pattern should be included for better representation of data. 6. The in vitro biofilm forming assay needs to be compared with the antibiogram data as well as with the serotypes to derive findings. Overall, the discussion with regard to the biofilm forming ability and its comparison with previous assays shall be improved. Reviewer #2: PONE-D-21-17398 Molecular characterization of Salmonella spp. and Listeria monocytogenes strains from biofilms in cattle and poultry slaughterhouses located in the Federal District and State of Goiás, Brazil. This study aimed to detect biofilm-induced contamination points and the presence of these microorganisms in processing plants of cattle and poultry slaughterhouses, and to characterize them with respect to pathogenicity potential, biofilm formation and antimicrobial resistance. The study could isolate 14 Listeria monocytogenes and one Salmonella enterica from poultry slaughterhouses. L. monocytogenes puslotypes 5 and 9 were more frequently isolated than others. The authors conclude that these are persistent, biofilm forming strains that might constitute constant sources of contamination of processed meat. Comments The number of isolates recovered in this study are limited. The relevance of whole genome sequencing of the only isolate of Salmonella to this study is not clear. Although the isolates exhibited biofilm formation, this together with the frequency of isolation of two pulsotypes does not provide strong evidence to suggest that the isolates are persistent contaminants in these facilities. Further, the sources of contamination are obscure. The manuscript has abundantly used the available literature to support their findings. However, the results available from the study are too limited to make such conclusions. Major points • I am not convinced with the concept biofilm-induced contamination points, which is not defined in the manuscript. Past studies have analyzed the presence of Listeria monocytogenes, Salmonella etc from processing plants by swab analysis approach. In lines 303-304, you have cited studies from the same geographical region and similar sampling points. However, this manuscript considers swab isolates form surfaces as biofilm formers. (Lines 286-288: The present study is the first investigation of L. monocytogenes biofilms in poultry and cattle slaughterhouses facilities, equipment, and utensils in the region). Again in L289-290, it is stated that “The prior findings corroborate the present results”. Corroborate what? The presence of L. monocytogenes or the biofilm L. monocytogenes? • The persistent contaminant from biofilms across different sampling time points and locations should be clearly defined. • Table 2: Here, the number of swabs from different collection points are different. Please explain why. • L307-308: Here, it is stated that L. monocytogenes was detected in two samples collected on different days and this could be due to persistent, biofilm-forming strains. How close were these sampling days?. If I am correct, 5 swabs yielded equal number of isolates. How many isolates were obtained from each positive sample? It is unlikely that you got just one isolate from a sample. If you got more than one isolate, did you compare them phenotypically and genetically and then select non-repetitive isolates?. • Again in L308-309, it is stated that “L. monocytogenes was detected in two samples collected on different days, suggesting the presence of biofilm at the site”. Did you collect samples immediately after sanitization? How do you rule out recontamination after disinfection? • L313-314: In Berrang et al. (2010), the source of L.monocytogenes was the raw meat. According to this study, a persistent drain subtype was identical with the raw meat subtype, and this clone was recovered frequently in their sampling. However, in your study, it appears that there is no correlation between the source and the recovery of the clonal isolate from the meat chute. • Which pulsotype was isolated frequently from meat chute? . Since you followed CDC protocol, you should be able to compare your PFGE pattern with those in PulseNet database. • L440-442: Were L. monocytogenes resistant to chloramphenicol before the ban of the antibiotic? This is important to understand the effect of antibiotic ban on the resistance patterns. • You have used 12oC to study biofilm formation. Does this simulate the temperature conditions of your sampling locations? • Pulsotype 9 and 5 were more frequently isolated and probably the persistent strains as suggested in the manuscript. It is important to know if these pulsotypes exhibited higher biofilm formation compared to others which were not isolated frequently. This will strengthen your hypothesis that the persistence of these pulsotypes is due to their ability to form strong biofilms. • The sections on antimicrobial susceptibility and biofilm formation by Salmonella Minnesota can be combined. The study could isolate a single Salmonella and the significance of this finding is very limited. • Please avoid claiming “first time” in multiple places in the same manuscript, unless the finding is very significant. • Materials and methods: Samples were collected from 3 poultry slaughterhouses and 2 cattle slaughterhouses. Eight visits were conducted in two facilities. If I got it correctly, it would be 8x3 =24 and 8x2-16 (40 in total). And in each visit, samples were collected from installations and the equipment. Were the same locations samples each time? If so, how many swabs from each of these? An illustration would be useful for the readers to understand your sampling strategy. • L120: “…Biofilms were characterized..”. Biofilms can be formed on any of the above sampling locations (installations/equipment). Did you look at this possibility? Of did you select a few locations for biofilm bacteria?. Minor points • The abstract is too long, and you might consider shortening it. • A Venn diagram can help understand the distribution of pulsotypes from different locations. • I have indicated few minor corrections in the manuscript itself. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.
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Revision 1 |
Molecular characterization of Salmonella spp. and Listeria monocytogenes strains from biofilms in cattle and poultry slaughterhouses located in the Federal District and State of Goiás, Brazil PONE-D-21-17398R1 Dear Dr. Agostinho Davanzo, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Iddya Karunasagar Academic Editor PLOS ONE Additional Editor Comments (optional): All reviewer comments have been addressed. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: N/A ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The authors have modified the manuscript. My concerns have been addressed. I do not have further comments. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No |
Formally Accepted |
PONE-D-21-17398R1 Molecular characterization of Salmonella spp. and Listeria monocytogenes strains from biofilms in cattle and poultry slaughterhouses located in the Federal District and State of Goiás, Brazil Dear Dr. Agostinho Davanzo: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Iddya Karunasagar Academic Editor PLOS ONE |
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