Identification of tandem repeat families from long-read sequences of Humulus lupulus
Fig 3
Sequence variation in the HuluTR120 family.
(A) Differences observed in diagonal patterns from reads that match the HuluTR120 family. Dot plot patterns are designated according to the aspects of the parallel diagonal morphology and designated as "Higher continuity" or "Lower continuity" in reads with Full or Partial TR occupancy. (B) Pair-wise heat map matrix of average sequence similarity (% identity)between any two reads. The diagonal boxes report within-read average. The numbers on the left and across the top identify the PacBio source read. The color scheme is shown to the right. (D) CLUSTAL Omega sequence alignment example for identification of short sequence OLIGO for fluorescent labeling and subsequent FISH probe design.