Multiscale analysis for patterns of Zika virus genotype emergence, spread, and consequence
Table 1
Dispersal patterns of select mutations according to country and year: Comparison of patterns of emergence of select persistent mutations in the Pr and Env genes.
The number of whole genome sequences present in GenBank and ViPR databases for pre-emergent and epidemic-associated mutations were tabulated to allow easy visualization of similarities in time, location, and number of cases between mutations. Mutations identified as increasing in prevalence and/or persistence can be further visualized for trajectory. The first column identifies each mutation according to nucleotide (nt) site: codon: protein: residue #: amino acid, followed by the year and total number of samples sequenced that year (N/Year). Cells are colored according to number (red, yellow, green: high, medium, low). S1 Table lists all nonsynonymous mutations detected in 3 or more sequences. Country names are abbreviated using the first 5 letters of the name or common abbreviation. AA—amino acid; Impor—imported case.