Phylogeny of the Viral Hemorrhagic Septicemia Virus in European Aquaculture
Fig 4
Mismatch distributions and Bayesian skyline plot of 5i sequences.
The mismatch distribution is based on the complete G gene sequence and is calculated separately for the following: 152 5i sequences from Denmark, Germany, and the United Kingdom, collected between 2000 and 2011; and 137 Danish 5i sequences from 2000 to 2009. Table 1 lists the respective values of the raggedness index (r), nucleotide diversity (PI), Tajima’s D, and Fu’s Fs of each dataset. The Bayesian skyline plot shows changes of the 5i population size between 2000 and 2009. The plot was generated using 137 Danish 5i sequences (complete G gene sequence). X axis: time in years, Y axis: population size. The middle solid line is the median estimate, and the area between the blue lines shows the 95% highest probability density (HPD).