Phylogenomic Analyses of Nuclear Genes Reveal the Evolutionary Relationships within the BEP Clade and the Evidence of Positive Selection in Poaceae
Figure 1
Phylogenetic relationships of the BEP Clade.
Phylogenomic trees were inferred by the concatenation analyses, PAUP, RAxML and MrBayes. Species trees were also estimated by the coalescent method, MP-EST. The bootstrap values above the horizontal are based on protein, while the values below are based on nucleotide data. “*” indicates support values of posterior probabilities (PP) = 1.0 and bootstrap (BP) = 100. “#” indicates all support values of PP = 1.0 and BP = 100. Support values are shown for nodes as maximum parsimony bootstrap/maximum likelihood bootstrap/Bayesian inference posterior probability/maximum pseudo-likelihood model bootstrap. Branch lengths were estimated through protein super-matrix using Bayesian analysis, and scale bar denotes substitutions per site.