Testing Hardy-Weinberg Proportions in a Frequency-Matched Case-Control Genetic Association Study
Table 3
Estimated type I error probability for test of deviation from HWP of SNP2, a causal SNP to primary disease but unassociated with secondary phenotype (MAF = 40%), at 0.05 and 0.0001 significance levels in simulation studies* using different approaches for HWP testing.