Different but overlapping populations of Strongyloides stercoralis in dogs and humans—Dogs as a possible source for zoonotic strongyloidiasis
Fig 4
Sample relatedness analysis on whole genome data.
A) Neighbor joining tree based on a genomic identity-by-state relationship matrix in cooperating 1326 SNPs (thresholds: LD = 0.05, MAF = 0.05). B) Neighbor joining tree based on pairwise similarities of the 23 individual genomes estimated using kWIP. The same samples in the two trees are connected with dotted lines colored in red for human derived worms and in blue for dog derived worms. ERX044031 indicates the reference genome short read data set [57], which has HVR I haplotype I and HVR IV haplotype A. The labels contain: [identifier of the worm] | [identifier of the host individual] | [HVR I haplotype, HVR IV haplotype], with each attribute separated by vertical lines.