XPRESSyourself: Enhancing, standardizing, and automating ribosome profiling computational analyses yields improved insight into data
Fig 1
Workflow schematic of the inputs, outputs, and organization of XPRESSpipe.
Representation of the general steps performed by XPRESSpipe with data and log outputs. Steps in parentheses are optional to the user. Input and output file types are in parentheses for each input or output block. The main script(s) used for a given step are in yellow blocks. The green block indicates input sequence file(s). Pink blocks indicate reference input files and curated reference. Orange blocks indicate output files. Blue blocks indicate general quality control and log file outputs. Differential expression analysis is run independently from the pipeline as the user will need to ensure count table and metadata table formatting are correct before use.