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Prior expectations evoke stimulus-specific activity in the deep layers of the primary visual cortex

Fig 2

Analysis approach.

(A) Illustration of ROI selection on sagittal slice of the mean functional scan of 1 participant. Overlaid red and yellow lines indicate pial and WM boundaries, respectively, as determined by registering anatomical boundaries to the mean functional image using RBR. Within V1 (white), active voxels were selected based on significant activation in the functional grating localiser (green). From these active voxels, we selected the 500 most strongly 45°-preferring (pink) and 135°-preferring (blue) voxels, respectively. With all voxels in these 2 ROIs, we determined how their volume was distributed over the superficial, middle, and deep cortical layers. (B) Schematic example of a voxel (red square) and the distribution of its volume over the 3 GM layers. This layer volume distribution was determined for each voxel and used as the basis of a regression approach in order to obtain layer-specific BOLD time courses (see Materials and methods). (C) Deep, middle, and superficial cortical layers indicated in coloured ribbons. Cytoarchitectural image of V1 adapted from [88]. BOLD, blood oxygen level–dependent; GM, grey matter; RBR, recursive boundary registration; ROI, region of interest; V1, primary visual cortex; WM, white matter.

Fig 2

doi: https://doi.org/10.1371/journal.pbio.3001023.g002