A detailed evaluation for air cooling of fuel debris in actual reactors will be essential in fuel debris retrieval under dry conditions. To understand the heat transfer in and around fuel debris, which is assumed as a porous medium in the primary containment vessel (PCV) mechanistically, we newly applied the porous medium model to the multiphase and multicomponent computational fluid dynamics code named JUPITER (JAEA Utility Program for Interdisciplinary Thermal-hydraulics Engineering and Research). We applied the Darcy–Brinkman model as for the porous medium model. This model has high compatibility with JUPITER because it can treat both a pure fluid and a porous medium phase simultaneously in the same manner as the one-fluid model in multiphase flow simulation. We addressed the case of natural convection with a high-velocity flow standing out nonlinear effects by implementing the Forchheimer model, including the term of the square of the velocity as a nonlinear effect to the momentum transport equation of JUPITER. We performed some simple verification and validation simulations, such as the natural convection simulation in a square cavity and the natural convective heat transfer experiment with the porous medium, to confirm the validity of the implemented model. We confirmed that the result of JUPITER agreed well with these simulations and experiments. In addition, as an application of the updated JUPITER, we performed the preliminary simulation of air cooling of fuel debris in the condition of the Fukushima Daiichi Nuclear Power Station unit 2 including the actual core materials. As a result, JUPITER calculated the temperature and velocity field stably in and around the fuel debris inside the PCV. Therefore, JUPITER has the potential to estimate the detailed and accurate thermal-hydraulics behaviors of fuel debris.