skip to main content
10.1145/3608164.3608172acmotherconferencesArticle/Chapter ViewAbstractPublication PagesicbbtConference Proceedingsconference-collections
research-article

A Bald Eagle Search Optimization Based Weighted Rank Aggregation Method for Microarray Data Classification

Published:07 November 2023Publication History

ABSTRACT

The rapid development of microarray technology has generated a large amount of microarray data, and the classification of these data is meaningful for cancer diagnosis, treatment and prognosis. The classification of high-dimensional microarray data with small samples is a challenging problem, which usually requires feature selection methods to reduce the data dimensionality first. However, different feature selection methods usually generate different feature lists for the same data. Researchers need to choose among many feature selection methods, which reduces the research efficiency. Therefore, rank aggregation method is used to generate a optimal list by aggregating all ordered feature lists generated by different feature selection methods. It can combine the advantages of multiple feature selection methods and does not prefer a particular method, so it is more robust to outliers, noises and errors. In this paper, we propose a weighted rank aggregation method based on the Bald Eagle Search optimization. A positional weight is designed to emphasize the importance of the top features in the list, so that the distance between lists can be measured more accurately. In addition, we improve the Bald Eagle Search algorithm for optimizing rank aggregation method to obtain a optimal ordered list. The experimental results on six public microarray datasets indicate that the features selected by our method can significantly improve the classification performance.

References

  1. F Adacd, E Ata, D Smb, and F Rmc. 2020. Gene selection and classification of microarray data method based on mutual information and moth flame algorithm. Expert Systems with Applications 166 (2020).Google ScholarGoogle Scholar
  2. Juan A Aledo, Jose A Gámez, and David Molina. 2013. Tackling the rank aggregation problem with evolutionary algorithms. Appl. Math. Comput. 222 (2013), 632–644.Google ScholarGoogle ScholarDigital LibraryDigital Library
  3. N. Almugren and H. M. Alshamlan. 2019. New Bio-Marker Gene Discovery Algorithms for Cancer Gene Expression Profile. IEEE Access PP, 99 (2019), 1–1.Google ScholarGoogle Scholar
  4. HA Alsattar, AA Zaidan, and BB Zaidan. 2020. Novel meta-heuristic bald eagle search optimisation algorithm. Artificial Intelligence Review 53, 3 (2020), 2237–2264.Google ScholarGoogle ScholarCross RefCross Ref
  5. A. Chaudhuri and T. P. Sahu. 2022. Multi-objective feature selection based on quasi-oppositional based Jaya algorithm for microarray data. Knowledge-Based Systems 236 (2022), 107804–.Google ScholarGoogle ScholarDigital LibraryDigital Library
  6. Robert P DeConde, Sarah Hawley, Seth Falcon, Nigel Clegg, Beatrice Knudsen, and Ruth Etzioni. 2006. Combining results of microarray experiments: a rank aggregation approach. Statistical applications in genetics and molecular biology 5, 1 (2006).Google ScholarGoogle Scholar
  7. Chris Ding and Hanchuan Peng. 2005. Minimum redundancy feature selection from microarray gene expression data. Journal of bioinformatics and computational biology 3, 02 (2005), 185–205.Google ScholarGoogle ScholarCross RefCross Ref
  8. Yunpeng Gao and Ke Xu. 2019. pRankAggreg: A fast clustering based partial rank aggregation. Information Sciences 478 (2019), 408–421.Google ScholarGoogle ScholarCross RefCross Ref
  9. Jie Huang, Li Zhang, Changyu He, Ying Qu, Jianfang Li, Jianian Zhang, Tao Du, Xuehua Chen, Yingyan Yu, Bingya Liu, 2015. Claudin-1 enhances tumor proliferation and metastasis by regulating cell anoikis in gastric cancer. Oncotarget 6, 3 (2015), 1652.Google ScholarGoogle ScholarCross RefCross Ref
  10. A. Jain and D. Zongker. 1997. Feature selection: evaluation, application, and small sample performance. IEEE Trans.pattern Anal.mach.intell 19, 2 (1997), 153–158.Google ScholarGoogle ScholarDigital LibraryDigital Library
  11. Indu Jain, Vinod Kumar Jain, and Renu Jain. 2018. Correlation feature selection based improved-binary particle swarm optimization for gene selection and cancer classification. Applied Soft Computing 62 (2018), 203–215.Google ScholarGoogle ScholarCross RefCross Ref
  12. X. Jiang, L. H. Lim, Y. Yao, and Y. Ye. 2011. Statistical ranking and combinatorial Hodge theory. Mathematical Programming 127, 1 (2011), 203–244.Google ScholarGoogle ScholarDigital LibraryDigital Library
  13. Raivo Kolde, Sven Laur, Priit Adler, and Jaak Vilo. 2012. Robust rank aggregation for gene list integration and meta-analysis. Bioinformatics 28, 4 (2012), 573–580.Google ScholarGoogle ScholarDigital LibraryDigital Library
  14. Liang Liang, Jin-hui Zhu, Gang Chen, Xin-gan Qin, and Jun-qiang Chen. 2020. Prognostic values for the mRNA expression of the ADAMTS family of genes in gastric cancer. Journal of Oncology 2020 (2020).Google ScholarGoogle Scholar
  15. Shili Lin. 2010. Rank aggregation methods. Wiley Interdisciplinary Reviews: Computational Statistics 2, 5 (2010), 555–570.Google ScholarGoogle ScholarDigital LibraryDigital Library
  16. H. Lu, J. Chen, K. Yan, Q. Jin, Y. Xue, and Z. Gao. 2016. A hybrid feature selection algorithm for gene expression data classification. Neurocomputing 256, sep.20 (2016), 56–62.Google ScholarGoogle Scholar
  17. M. Maghsoudloo, S. A. Jamalkandi, A. Najafi, and A. Masoudi-Nejad. 2020. An efficient hybrid feature selection method to identify potential biomarkers in common chronic lung inflammatory diseases. Genomics5 (2020), 112.Google ScholarGoogle Scholar
  18. M. Mandal and A. Mukhopadhyay. 2017. Multiobjective PSO-based rank aggregation: Application in gene ranking from microarray data. Information Sciences s 385–386 (2017), 55–75.Google ScholarGoogle Scholar
  19. M. E. Matheny, F. S. Resnic, N. Arora, and L. Ohno-Machado. 2007. Effects of SVM parameter optimization on discrimination and calibration for post-procedural PCI mortality. Journal of Biomedical Informatics 40, 6 (2007), 688–697.Google ScholarGoogle ScholarDigital LibraryDigital Library
  20. Alberto Maydeu Olivares. 2006. Corrections to Classical Procedures for Estimating Thurstone’s Case V Model for Ranking Data. Instituto de Empresa Business School Working Paper No. WP06-25 (2006).Google ScholarGoogle Scholar
  21. Trevelyan R Menheniott, Louise O’Connor, Yok Teng Chionh, Jan Däbritz, Michelle Scurr, Benjamin N Rollo, Garrett Z Ng, Shelley Jacobs, Angelique Catubig, Bayzar Kurklu, 2016. Loss of gastrokine-2 drives premalignant gastric inflammation and tumor progression. The Journal of clinical investigation 126, 4 (2016), 1383–1400.Google ScholarGoogle ScholarCross RefCross Ref
  22. Mohammadreza Momenzadeh, Mohammadreza Sehhati, and Hossein Rabbani. 2019. A novel feature selection method for microarray data classification based on hidden Markov model. Journal of biomedical informatics 95 (2019), 103213.Google ScholarGoogle ScholarDigital LibraryDigital Library
  23. Y. Nakayama, K. Yata, and M. Aoshima. 2021. Clustering by principal component analysis with Gaussian kernel in high-dimension, low-sample-size settings. Journal of Multivariate Analysis 185 (2021).Google ScholarGoogle Scholar
  24. Somnath Panja, Samiran Bag, Feng Hao, and Bimal Roy. 2020. A smart contract system for decentralized borda count voting. IEEE Transactions on Engineering Management 67, 4 (2020), 1323–1339.Google ScholarGoogle ScholarCross RefCross Ref
  25. Vasyl Pihur, Susmita Datta, and Somnath Datta. 2009. RankAggreg, an R package for weighted rank aggregation. BMC bioinformatics 10, 1 (2009), 1–10.Google ScholarGoogle Scholar
  26. S. Salesi, G. Cosma, and M. Mavrocouniotis. 2021. TAGA: Tabu Asexual Genetic Algorithm Embedded in a Filter/Filter Feature Selection Approach for High-dimensional Data. Information Sciences (2021).Google ScholarGoogle Scholar
  27. Gehad Ismail Sayed, Mona M Soliman, and Aboul Ella Hassanien. 2021. A novel melanoma prediction model for imbalanced data using optimized SqueezeNet by bald eagle search optimization. Computers in Biology and Medicine 136 (2021), 104712.Google ScholarGoogle ScholarDigital LibraryDigital Library
  28. Jingwei Too and Abdul Rahim Abdullah. 2021. A new and fast rival genetic algorithm for feature selection. The Journal of Supercomputing 77, 3 (2021), 2844–2874.Google ScholarGoogle ScholarDigital LibraryDigital Library
  29. Wanchuang Zhu, Yingkai Jiang, Jun S Liu, and Ke Deng. 2021. Partition-Mallows Model and Its Inference for Rank Aggregation. J. Amer. Statist. Assoc.just-accepted (2021), 1–41.Google ScholarGoogle Scholar

Index Terms

  1. A Bald Eagle Search Optimization Based Weighted Rank Aggregation Method for Microarray Data Classification

          Recommendations

          Comments

          Login options

          Check if you have access through your login credentials or your institution to get full access on this article.

          Sign in
          • Published in

            cover image ACM Other conferences
            ICBBT '23: Proceedings of the 2023 15th International Conference on Bioinformatics and Biomedical Technology
            May 2023
            313 pages
            ISBN:9798400700385
            DOI:10.1145/3608164

            Copyright © 2023 ACM

            Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than the author(s) must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected].

            Publisher

            Association for Computing Machinery

            New York, NY, United States

            Publication History

            • Published: 7 November 2023

            Permissions

            Request permissions about this article.

            Request Permissions

            Check for updates

            Qualifiers

            • research-article
            • Research
            • Refereed limited
          • Article Metrics

            • Downloads (Last 12 months)15
            • Downloads (Last 6 weeks)5

            Other Metrics

          PDF Format

          View or Download as a PDF file.

          PDF

          eReader

          View online with eReader.

          eReader

          HTML Format

          View this article in HTML Format .

          View HTML Format