1887

Abstract

Two Gram-positive bacterial strains, designated as YMB-B2 and BWT-G7, were isolated from larvae of L. and , respectively, and their taxonomic positions examined by a polyphasic approach. Both of the isolates contained ornithine as the cell-wall diamino acid. The acyl type of murein was -glycolyl. The predominant menaquinones were MK-11 and MK-12. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol and an unidentified glycolipid. Both of the isolates contained C anteiso and C anteiso as the major fatty acids. Strain YMB-B2 also had C iso as an additional major fatty acid. The 16S rRNA gene phylogeny showed that the novel strains formed two distinct sublines within the genus . Strain YMB-B2 was most closely related to the type strains of (99.1 % sequence similarity) and (99.0 %) whereas strain BWT-G7 formed a tight cluster with the type strain of (98.9 %). The phylogenomic analysis based on 92 core genes supported their relationships in 16S rRNA gene phylogeny. Overall genomic relatedness indices warranted that the isolates represent two new species of the genus . Based on the results obtained here, sp. nov. (type strain YMB-B2=KCTC 49593=CCM 9151) and sp. nov. (type strain BWT-G7=KACC 22262=NBRC 115127) are proposed.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.005729
2023-03-09
2024-04-27
Loading full text...

Full text loading...

References

  1. Orla-Jensen S. The Lactic Acid Bacteria Copenhagen: Høst; 1919
    [Google Scholar]
  2. Suzuki K, Hamada M et al. Genus I. Microbacterium Orla-Jensen 1919, 179AL emend. Takeuchi and Hatano 1988, 744VP. In Goodfellow M, Kampfer P, Busse H-J, Trujillo ME, Suzuki K. eds Bergey’s Manual of Systematic Bacteriology, 2nd edn. vol 4 New York: Springer; 2012 pp 814–855
    [Google Scholar]
  3. Fidalgo C, Riesco R, Henriques I, Trujillo ME, Alves A. Microbacterium diaminobutyricum sp. nov., isolated from Halimione portulacoides, which contains diaminobutyric acid in its cell wall, and emended description of the genus Microbacterium. Int J Syst Evol Microbiol 2016; 66:4492–4500 [View Article] [PubMed]
    [Google Scholar]
  4. Anandham R, Tamura T, Hamada M, Weon H-Y, Kim S-J et al. Microbacterium suwonense sp. nov., isolated from cow dung. J Microbiol 2011; 49:852–856 [View Article] [PubMed]
    [Google Scholar]
  5. Dong K, Yang J, Lu S, Pu J, Lai X-H et al. Microbacterium wangchenii sp. nov., isolated from faeces of Tibetan gazelles (Procapra picticaudata) on the Qinghai-Tibet Plateau. Int J Syst Evol Microbiol 2020; 70:1307–1314 [View Article]
    [Google Scholar]
  6. Behrendt U, Ulrich A, Schumann P. Description of Microbacterium foliorum sp. nov. and Microbacterium phyllosphaerae sp. nov., isolated from the phyllosphere of grasses and the surface litter after mulching the sward, and reclassification of Aureobacterium resistens (Funke et al. 1998) as Microbacterium resistens comb. nov. Int J Syst Evol Microbiol 2001; 51:1267–1276 [View Article]
    [Google Scholar]
  7. Chen M-S, Li F, Yan X-R, Tuo L. Microbacterium excoecariae sp. nov., a novel endophytic actinobacterium isolated from bark of Excoecaria agallocha Linn. Int J Syst Evol Microbiol 2020; 70:6235–6239 [View Article] [PubMed]
    [Google Scholar]
  8. Lysenko O. The occurrence of species of the genus Brevibacterium in insects. J insect Path 1959; 1:34–42
    [Google Scholar]
  9. Collins MD, Jones D, Kroppenstedt RM. Reclassification of Brevibacterium imperiale (Steinhaus) and “Corynebacterium laevaniformans” (Dias and Bhat) in a Redefined Genus Microbacterium (Orla-Jensen), as Microbacterium imperiale comb. nov. and Microbacterium laevaniformans nom. rev.; comb. nov. Syst Appl Microbiol 1983; 4:65–78 [View Article]
    [Google Scholar]
  10. Steinhaus EA. A study of the bacteria associated with thirty species of insects. J Bacteriol 1941; 42:757–790 [View Article]
    [Google Scholar]
  11. Takeuchi M, Hatano K. Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. Int J Syst Bacteriol 1998; 48 Pt 3:739–747 [View Article] [PubMed]
    [Google Scholar]
  12. Heo J, Cho H, Kim MA, Hamada M, Tamura T et al. Microbacterium protaetiae sp. nov., isolated from gut of larva of Protaetia brevitarsis seulensis. Int J Syst Evol Microbiol 2020; 70:2226–2232 [View Article]
    [Google Scholar]
  13. Lee SD. Phycicoccus jejuensis gen. nov., sp. nov., an actinomycete isolated from seaweed. Int J Syst Evol Microbiol 2006; 56:2369–2373 [View Article]
    [Google Scholar]
  14. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997; 25:4876–4882 [View Article]
    [Google Scholar]
  15. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article] [PubMed]
    [Google Scholar]
  16. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article] [PubMed]
    [Google Scholar]
  17. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article] [PubMed]
    [Google Scholar]
  18. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39:783–791 [View Article]
    [Google Scholar]
  19. Na S-I, Kim YO, Yoon S-H, Ha S-M, Baek I et al. UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction. J Microbiol 2018; 56:280–285 [View Article] [PubMed]
    [Google Scholar]
  20. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article]
    [Google Scholar]
  21. Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article] [PubMed]
    [Google Scholar]
  22. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci 2009; 106:19126–19131 [View Article]
    [Google Scholar]
  23. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O et al. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 1987; 37:463–464 [View Article]
    [Google Scholar]
  24. Lee SD. Labedella gwakjiensis gen. nov., sp. nov., a novel actinomycete of the family Microbacteriaceae. Int J Syst Evol Microbiol 2007; 57:2498–2502 [View Article]
    [Google Scholar]
  25. Uchida K, Aida K. An improved method for the glycolate test for simple identification of the acyl type of bacterial cell walls. J Gen Appl Microbiol 1984; 30:131–134 [View Article]
    [Google Scholar]
  26. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  27. Minnikin DE, Patel PV, Alshamaony L, Goodfellow M. Polar lipid composition in the classification of nocardia and related bacteria. Int J Syst Bacteriol 1977; 27:104–117 [View Article]
    [Google Scholar]
  28. Kim Y-J, Kim MK, Bui TPN, Kim H-B, Srinivasan S et al. Microbacterium ginsengiterrae sp. nov., a beta-glucosidase-producing bacterium isolated from soil of a ginseng field. Int J Syst Evol Microbiol 2010; 60:2808–2812 [View Article] [PubMed]
    [Google Scholar]
  29. Takeuchi M, Hatano K. Proposal of six new species in the genus Microbacterium and transfer of Flavobacterium marinotypicum ZoBell and Upham to the genus Microbacterium as Microbacterium maritypicum comb. nov. Int J Syst Bacteriol 1998; 48 Pt 3:973–982 [View Article]
    [Google Scholar]
  30. Zlamala C, Schumann P, Kämpfer P, Valens M, Rosselló-Mora R et al. Microbacterium aerolatum sp. nov., isolated from the air in the “Virgilkapelle” in Vienna. Int J Syst Evol Microbiol 2002; 52:1229–1234 [View Article] [PubMed]
    [Google Scholar]
  31. Peng S, Dongying L, Bingxin Y, Mingjun L, Gehong W. Microbacterium shaanxiense sp. nov., isolated from the nodule surface of soybean. Int J Syst Evol Microbiol 2015; 65:1437–1443 [View Article] [PubMed]
    [Google Scholar]
  32. Karojet S, Kunz S, van Dongen JT. Microbacterium yannicii sp. nov., isolated from Arabidopsis thaliana roots. Int J Syst Evol Microbiol 2012; 62:822–826 [View Article] [PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.005729
Loading
/content/journal/ijsem/10.1099/ijsem.0.005729
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error