ABSTRACT
Clusterin is a 75-80 kDa heterodimeric glycoprotein, that is produced in most tissues but which exact biological role is still not clear. Particularly, its role in protection or promotion of apoptosis is heavily disputed, since data supporting both views have been reported in several independent studies. To clarify this issue, and also to determine whether clusterin expression itself might be affected by apoptosis, in the present study, rat thymocytes were treated with dexamethasone, -a synthetic glucocorticoid that elicits apoptosis in thymocytes-, and clusterin mRNA expression was analyzed by semi-quantitative RT-PCR before and after induction of apoptosis. Interestingly, neither the treatment with dexamethasone in vitro nor triggering of apoptosis in vivo up- regulated clusterin expression, opposing the view that clusterin is involved in apoptotic processes. On the other hand, a new clusterin mRNA isoform was detected and isolated, whose expression was restricted to freshly isolated thymocytes. This novel isoform lacks the post-translational proteolytic cleavage site and is therefore predicted to encode a monomeric protein. The biological function under normal circumstances, however, will need further investigations for clarification. While apoptosis could not modulate clusterin expression, activation of thymocytes with concanavalin A and interleukin-2 resulted in up-regulation of clusterin mRNA level, indicating that clusterin expression is rather under the control of cell activation-mediated rather than apoptosis- induced signals.
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INTRODUCTION
Originally discovered in ram rete testis fluid upon its ability to mediate aggregation or clustering of various cells in vitro1,2, clusterin has been since then found in virtually all tissues throughout the body3. While its biological role is still under dispute, a variety of putative functions have been suggested. These include a role in serving as a lipid transport molecule4, a regulator of complement-mediated cytolysis5 as well as a playing role in the protection of the cell membrane from stress by acting as a secreted heat shock protein6 or involvement in the cellular response upon apoptosis7. Such variant functional roles have lead to reporting the same protein under several different names, which include sulfated glycoprotein-2 (sgp-2)8, ionizing radiation- induced protein-8 (XIP8), testosterone-repressed prostate message-2 (TRPM-2) as well as clusterin and Apo/J. While there is now a general agreement on referring this protein as clusterin9, a consensus on its biological function has still not been reached. Current reports try to explain those different functional aspects of clusterin by postulating this protein as a novel secreted chaperone9, however, further supporting results are required to reach a definitive conclusion.
In the case of its involvement in apoptosis, clusterin plays a heavily disputed role. Since the first description of clusterin mRNA induction in apoptotic rat prostate cells10, clusterin expression has been repeatedly confirmed in connection with apoptosis. Rat thymocytes11 and mouse neuronal cells12 were shown to accumulate clusterin mRNA upon induction of apoptosis. Also tumor cells were identified as source of increased clusterin expression, which was considered as a result of the apoptotic processes13. In contrast, other groups have reported a lack of evidence for clusterin expression in apoptotic thymocytes14,15 while others have shown that, not apoptotic cells themselves but rather, bystander cells surviving the apoptotic process might be the source of clusterin production16. In addition to these reports, contradictory observations on the role of clusterin in both protecting17 and promoting apoptosis18 have been reported; therefore the biological function of clusterin during apoptosis is indeed confusing and conflicting.
The present study was performed to clarify some aspects of this issue, first by analysis of clusterin mRNA expression upon induction of apoptosis both in isolated rat thymocytes in vitro, and by further analysis in vivo. In contrast to previous studies using Northern blot analysis, in this study clusterin mRNA was quantified and analyzed by reverse transcription (RT)-PCR and competitive RT-PCR, which represent more sensitive tools for mRNA analysis. The apoptotic status of rat thymocytes was monitored on both molecular and cellular level using DNA fragmentation assays and cell surface molecule analysis, respectively.
MATERIALS AND METHODS
Thymocyte isolation and induction of apoptosis
Sprague-Dawley rats of both sexes (6-8 weeks) were killed by CO2 asphyxiation, and their thymi were isolated for further processing into single cell suspension. In brief, thymi were passed through a 40-mesh stainless sieve (Sigma, St. Louis, MO, USA) into ice-cold Hank s balanced salt solution (HBSS), and single cell suspensions of isolated thymocytes were prepared in RPMI-1640 media (Life Technologies Inc., Grand Island, NY, USA) supplemented with 10% fetal bovine serum (Life Technologies Inc.), 2 μM glutamine, penicillin (100 U/ml), streptomycin (100 μg/ml) and 20 mM β-mercaptoethanol. Cells were maintained in a humidified 5.6% CO2 atmosphere at 37 °C. Induction of apoptosis in thymocytes in vitro was performed by pulsing the cells with 1 mM water-soluble dexamethasone (Sigma) for the indicated time values.
Total RNA and genomic DNA isolation from normal and apoptotic thymocytes
Isolation of total RNA was performed by the guanidium isothiocyanate method as originally described by Chomzynski and Sacchi19. In brief, 1×107 cells of thymocytes or 100 mg thymi tissue fragments were first resuspended in 500 μl of a guanidium isothiocyanate solution. After phenol/chloroform extraction, 400 μl of the upper aquatic phase was transferred into a new tube, and RNA was precipitated with 2.5 vol. absolute EtOH. The purity and intactness of the isolated RNA were determined by spectrophotometry and denaturing formaldehyde agarose gel electrophoresis, respectively. If necessary, isolated total RNA was treated with 2 units of RNase-free DNase I (RQ1 DNase; Promega, Madison, WI, USA) for 2 h at 37 °C to remove all possible genomic DNA contamination. Reverse transcription into cDNA was performed with the SuperScript II+ reverse transcriptase (Life Technologies Inc.) following the manufacturer's instructions. PCR was performed using the following primers for detection of clusterin and a-actin signals, respectively. Clusterin-up: 5′-cgggcgtctggcatcata-3′; Clusterin-down: 5′-catgcggcttttcctgcg-3′; β-actin up: 5′-ccttcaacaccccagcca-3′; β-actin-down: 5′-ccaccagacagcactgtg-3′. Using reverse-transcribed cDNA, all PCR were performed after the following protocol: 2 min denaturation at 96°C, then 36 cycles of a 45 sec denaturation step at 95 °C, 1 min annealing at 55 °C, 1 min elongation at 72°C and a final elongation step for 5 min at 72°C PCR was performed on a GeneAmp 2400 thermal cycler (Perkin Elmer, Foster City, CA, USA) using 1 unit of Taq polymerase (Promega) per reaction. The PCR products were analyzed in a 1.5% TAE-buffered agarose gel. Analysis of DNA fragmentation by apoptosis was performed after the protocol as described by Homburg et al20. Briefly, for a single assay 1×106 cells were harvested and resuspended in cell lysis buffer (0.5 % SDS, 10 mM EDTA, 50 mM Tris-HCl, pH 8.0) and treated with proteinase K (0.5 mg/ml) at 56°C for 2 h. After an additional RNase digestion step with 0.25 mg/ml RNase A (Roche Molecular Biochemicals, Mannheim, Germany) at 37 °C for 1 h, an aliquot of the whole cell lysate was loaded in the well of a 2 % TAE-agarose gel and analyzed by gel electrophoresis.
Cloning and characterization of the clusterin mRNA isoform
The two isoforms of the clusterin mRNA as amplified by RT-PCR and Pfu DNA polymerase (Stratagene, La Jolla, CA, USA) with the primer pair “lusterin-up” and “lusterin-down” were isolated and subcloned for further characterization and nucleotide sequencing. The PCR products were eluted from a 1.8% TAE-buffered agarose gel using the QIAquick gel extraction kit (Qiagen, Hilden, Germany) and subcloned into the pCR-Blunt II-TOPO vector (Invitrogen, De Schelp, The Netherlands). Nucleotide sequencing was performed at the Genome Research Center of the Korea Research Inst. of Bioscience and Biotechnology, Taejon, Korea, using an ABI PRISM DNA sequencing kit and ABI PRISM 377 DNA sequencer (Perkin Elmer).
Western blot analysis
For determination of clusterin expression at protein level, Western blot analysis was performed. Freshly isolated thymocytes (5×106/ml) were treated with concanavalin A (4 μg/ml) and IL-2 (4 μg/ml) or dexamethasone (1 μM). After 6 hours, cells (5×107) were harvested and washed 3 times in ice-cold PBS. The cell pellet was resuspended in 375 ml RIPA buffer (150 mM NaCl, 1% Nonidet P-40, 0.5% sodium deoxycholate, 0.1% SDS, 50 mM Tris-HCl, pH 8.0) and incubated for 30 min on ice. Cell lysates were clarified by centrifugation at 13,000 g for 20 min and supernatants were collected for electrophoresis. Samples were boiled for 5 min, and then same amounts of total protein were subjected to SDS-polyacrylamide gel electrophoresis. Proteins were transferred to Hybond-PVDF membranes in Tris-glycine buffer (48 mM Tris-HCl, pH 8.3, 39 mM glycine, 20% methanol) using a semi-dry transfer unit (AP-Biotech, Sweden), and membranes were then blocked overnight at 4 °C with 5% nonfat dry milk in TBS-T (10 mM Tris-HCl, pH 7.4, 150 mM NaCl, 0.05% Tween-20). Next day, rabbit anti-clusterin antiserum was applied to the blots to a 1:1000 dilution in TBS supplemented with 1% BSA. In a control blot, rabbit anti-actin polyclonal antibodies (Sigma) were applied to a concentration of 1 μg/ml. Membranes were reacted with each primary antibodies for 1 h 30 min at room temperature with agitation. After 6 times washing with TBS-T, the membranes were probed with horse radish peroxidase-conjugated goat anti-rabbit IgG antibody (Sigma) diluted 1:5,000 in TBS for 1 h at room temperature. After 6 times washing with TBS-T, proteins were visualized by reaction with chemiluminescence detection reagents (AP-Biotech).
In vivo administration of dexamethasone
Induction of apoptosis in immature thymocytes was achieved by a single intra-peritoneal injection of 1.5 mg/300g bodyweight water-soluble dexamethasone (Sigma) in to young adult SD rats as has been described by Sun et al21. After 24 h, rats were sacrificed by CO2 asphyxiation and their thymi were isolated for further analysis.
Fluorescence-activated Flow cytometry
For cell surface analysis of normal and apoptotic rat thymocytes, single cell suspensions of rat thymocytes were prepared by grinding the respective thymi through a 40-mesh stainless sieve (Sigma). Cells were then washed once in cold HBSS, and the concentration of the cell suspension was adjusted to 1×106/ml in staining buffer (0.1% BSA, 0.02% Na-azide in PBS). Cell surface staining was performed by incubating each 3×105 cells in staining buffer with the corresponding antibodies for 30 min on ice. FITC-conjugated anti-rat CD4 antibody and phycoerythrin-conjugated anti-rat CD8 antibodies were purchased from Pharmingen (La Jolla, CA, USA). Data acquisition was performed using the FACScalibur (Becton Dickinson, Mountain View, CA, USA) flow cytometer, and data were analyzed using the CellQuest software program (Becton Dickinson).
Semi-quantitative RT-PCR of clusterin mRNA expression
The semi-quantification of clusterin mRNA was performed by primer competition for which serially diluted internal control plasmids were co-amplified in a series of PCR either for the detection of cytoplasmic b-actin or clusterin mRNA. After the reaction, PCR products were resolved in a 1.8% TAE-buffered agarose gel, and the signal intensity of each band was quantified by densitometric analysis of the EtBr-stained DNA using a CCD-camera linked image analyzer system (Vilbert Lourmat, Marne La Valee, Cedex, France). The plasmid numbers used as internal standards were calculated using the following equation that has been described previously22: molecule number = amount of internal standard (g) X Avogadro's number (molecules/mol)/mass of internal standard (g/mol). Using this equation, it was calculated that 1 mg of 1000 bp DNA would correspond to 1.52 pmol, which in turn would correspond to 9.1×1011 molecules. In practice, the number of particular molecules, which are present in the reverse- transcribed mRNA was estimated by the number of control plasmid copies which was required to reach the equivalence point in the PCR reaction, where the signal intensity of the competitor/target ratio was 1. The internal standards for performing semi-quantitative PCR were constructed after the scheme as shown in Fig. 4. In brief, a partial b-actin cDNA fragment (529 bp) was amplified by RT-PCR using the primer pairs “β-actin up” and “β-actin down”. The PCR product was then treated with the restriction enzyme EaeI, which resulted in the deletion of a 138 bp fragment within the PCR product. The enzyme reaction was then directly used as template for a further PCR reaction, whereby the same “β-actin up” and “β-actin down” primers were employed for amplification. This time, two PCR products with different sizes were generated of which the smaller fragment was cloned into the pCR-Blunt II-TOPO vector (Invitrogen). The resulting plasmid was termed “pCR-rActin” and when using this plasmid as internal control for primer competition, an exactly 138 bp smaller PCR product than the original cDNA-derived band is produced. The construction of the internal control for clusterin mRNA quantification was performed in a similar manner, whereby the 798 bp clusterin PCR fragment as amplified using the primer pair, “Clusterin-up” and “Clusterin-down” was digested with the endonuclease NcoI to generate a 148 bp deletion fragment. The restriction enzyme reaction was then used as template for another round of PCR, whereby the shorter PCR product was cloned into the pCR-Blunt II-TOPO vector to generate the internal control plasmid “pCR-CLUS”.
RESULTS AND DISCUSSION
Clusterin mRNA expression in apoptosis was first determined using isolated rat thymocytes. For this, freshly prepared single cell suspensions were incubated with the synthetic glucocorticoid dexamethasone (DEX) for different time values, and then clusterin mRNA expression was analyzed by RT-PCR. Fig 1A confirms the successful induction of apoptosis by DEX-treatment in vitro. Fragmentation of genomic DNA into a 200-bp ladder was very weakly initiated after the first hour of DEX treatment and only after 4 h, a definitive 200-bp ladder was visible. Interestingly, DNA degradation was also accompanied by a gradual loss of total RNA with increasing incubation time, which had a later onset time than the degradation of genomic DNA (Fig 1B). Most surprisingly, the relative level of clusterin mRNA expression was largely unaffected by inducing thymocyte apoptosis. Rather, it is evident that the clusterin signal intensity diminished during the progress of apoptosis (Fig 1C). Since the relative amounts of RNA between different time points were normalized by adjusting to the β-actin signal (Fig 1C), the present results suggest that clusterin mRNA expression is clearly not up-regulated by induction of apoptosis in thymocytes. Based on this observation, we are ruling out that clusterin expression is directly affected by thymocyte apoptosis. Since most of the previously published studies had determined clusterin mRNA expressions only using RNA from whole thymic tissues and by DEX-administration in vivo7, 14, 15, 21, the results on the effect of apoptosis induction in isolated thymocyte single cell suspensions in vitro had been not available so far. Regarding the fact that immature thymocytes are the primary targets for inducing apoptosis in DEX-treatment, the current study precisely shows, without involving interfering background signals from thymic stromal cells, that clusterin mRNA expression is not induced in apoptotic cells. Therefore, these in vitro data rather supports the reports from Pearse et al15 and French et al14, who have described no apparent connection between apoptosis and clusterin mRNA level. In the present system, clusterin mRNA expression selectively decreases in course of DEX-induced apoptosis (Fig 1C), therefore it is evident that clusterin plays no substantial role in protecting or promoting apoptosis in thymocytes.
In the course of these experiments we isolated a clusterin RT-PCR product that was subsequently identified to be a novel isoform of rat clusterin mRNA. As shown in Fig 1C, a low molecular weight RT-PCR product was observed in freshly isolated thymocytes but not anymore after transferring cells into in vitro culture. To confirm that this low molecular weight band is indeed a novel isoform of clusterin mRNA and not a PCR artefact, the PCR products were cloned and their nucleotide sequence determined. Whereas the upper high-molecular PCR band exactly matched the published clusterin mRNA sequence from rat Sertoli cells, the low-molecular weight PCR band encoded a novel isoform of rat clusterin (Fig 2A). The nucleotide sequence of this PCR product has been deposited in GenBank (accession number AF314657), and Fig 2 shows the deduced amino acid sequence of the isoform compared to the published clusterin sequence. The schematic presentation of this new isoform (Fig 2B) indicated that the proteolytic cleavage site, which is responsible for generating the a- and b-subunits of the mature clusterin, is deleted. Based on this property, we predict that the novel isoform encodes a monomeric protein that is different from the native clusterin protein, which exists as a heterodimer9. The physiological function of such a protein, and the biological meaning of its expression being completely inhibited by transfer into in vitro culture, is not clear. But it is possible that some cellular signals that were present in vivo are lacking in media, and therefore the expression of this isoform can not be maintained. The identity of this signal or the conditions that result in the expression (or suppression) of this isoform are not known to us, so far. Nevertheless, it is evident that neither driving cells to apoptosis (Fig 1) nor inducing activation (Fig 3) can restore this selective expression. Molecular cloning of the whole cDNA of this novel isoform and its recombinant expression in mammalian cells are expected to resolve the issue about its biological role and help clarify the issues regarding its specific expression in vivo.
Since clusterin mRNA level was not up-regulated in the course of apoptosis, we further questioned whether clusterin expression would be a regulatory event at all. Therefore, to examine if clusterin expression might be affected by other cellular signals, thymocytes were activated with concanavalin A (Con A) and interleukin-2 (IL-2), which are well known T-cell stimulatory agents23. Thymocytes were either maintained in culture media for 1, 2 or 3 days under normal culture conditions or activated with Con A and IL-2 for the same time span. Interestingly, in the latter case, a significant induction of clusterin mRNA expression was observed, which was in good contrast to thymocytes incubated in media without any activation signals (Fig 3). To extend this observation to protein expression levels, as well as to evaluate the correlation of transcriptional and translational activities in clusterin expression, immunoblot analysis was performed. Fig 4 shows the result of a representative Western blot, where freshlyisolated thymocytes were either cultured in media, induced to apoptosis with DEX or triggered to activation by Con A and IL-2 treatment. While apoptotic thymocytes (DEX-treatment) do not have increased levels of clusterin expression (lane 2), activation of thymocytes with lectin and IL-2 showed a significant increase (lane 3), which is in agreement with the data from mRNA analysis. We conclude from these results that, while untreated rat thymocytes do express clusterin per se, its expression level is not affected by apoptosis but is induced and up-regulated by cellular activation and proliferation signals.
To examine the regulatory mechanisms for clusterin expression under in vivo situations, young adult rats were intra-peritoneally injected with DEX or with vehicle, and clusterin mRNA expression in their thymi was determined. The in vivo administration with DEX is known to induce massive apoptosis in mostly immature thymocytes, and this model has been frequently used for analysis of cellular events accompanying programmed cell death24. In our current study, the differences in clusterin expression were examined in a more quantitative manner for which a semi-quantitative RT-PCR was designed22, that is based on the primer competition to clusterin cDNA and an internal control vector. The construction of internal competitor molecules for rat clusterin and b-actin is shown in Fig 5.
When using the pCR-CLUS vector, the oligonucleotide primers “Clusterin-up” and “Clusterin-down” will generate a 798 bp PCR product, which is 148 bp longer than the that generated using rat thymocyte cDNA as template. The size difference enables us to distinguish the template origin of the PCR product, and in this manner, the relative amounts of clusterin mRNA can be estimated and compared. Normalization of total RNA amount was achieved in a semi-quantitative RT-PCR using the β-actin internal control plasmid, pCR-rActin. The 100 bp difference between cDNA-derived and control plasmid originated PCR products enabled the discrimination of the DNA band. After quantification and normalization of β-actin mRNA level, clusterin expression was analyzed in normal and apoptotic rat thymi.
The successful induction of apoptosis in vivo in DEX-treated rats was visualized by measuring the size differences between the thymi. As shown in Fig 6A, a drastic shrinkage of the organ size is observed which indicates the loss of cellularity upon induction of apoptosis. Further confirmation of the apoptotic process was obtained by the phenotypic analysis of the isolated thymocytes. As shown in Fig 6B, in DEX-treated rats, the immature CD4+, CD8+ double positive cell population was reduced to about 65% of all thymocytes, compared to 85% in untreated rats. The clusterin level between apoptotic and normal thymocytes was then semi-quantitatively determined by competitive RT-PCR. This assay is based on the primer competition of co-amplified control vectors with reverse transcribed cDNA. By prior determination of the concentration of the competitor molecules, the amount of the mRNA in interest can be estimated. As shown in Fig 7, β-actin signals were normalized between the two different probes, and then the clusterin mRNA levels were compared to each other. Using a serial dilution of competitor molecules, the relative amounts of clusterin mRNA were estimated to be equal or slightly less (2-fold) in DEX-treated rats compared to normal rats (Fig 7). In this regard, it is evident that induction of apoptosis, neither in vivo nor in vitro, up-regulates clusterin mRNA expression. Although other report show where clusterin is induced upon apoptosis in rat prostate cells7 and renal tubular epithelium during tissue regression3, our data suggest that clusterin expression would be not an universal indicator in apoptotic cells.
In conclusion, the present study shows that under both in vivo and in vitro conditions, induction of apoptosis in rat thymocytes is not associated with clusterin expression. In addition, neither a cell death protective nor an apoptosis-promoting role of clusterin could be assigned based upon the current observations. This is actually in contradiction to some previous results, where alterations in clusterin expression were observed upon induction of apoptosis11,16. A possible explanation for this discrepancy might be differences in the condition of delivering cell death-inducing signals, since it has been also previously reported that the quality of the cell death inducing signal can differently regulate and affect clusterin expression under apoptotic conditions25. In this regard, it could be speculated that DEX-induced apoptosis initiates a unique “Clusterin-independent” cell death program in thymocytes than apoptotic signals that are triggered, for example, in regressing rat ventral prostate, where clusterin expression has been repeatedly confirmed to be elevated26. On the other hand, we think it is rather more likely that the present results are in agreement with the view of Koch-Brandt and Morgans27, which postulates that the up-regulation of clusterin expression in apoptotic tissues origins from intact bystander cells rather than the apoptotic cells themselves. Since, DEX-induced apoptosis is mostly confined to CD4, CD8 double positive thymocytes, in vivo treatment of DEX would not affect thymic stroma cells. Therefore, while immature thymocytes are induced to cell death, stroma cells would not receive any signals for apoptosis, which might explain the absence of clusterin induction in DEX-injected thymi.
Nevertheless, evidence that clusterin indeed plays a cytoprotective role has been recently re-confirmed with the generation of clusterin-deficient mice, in which it was shown that clusterin limited the progression of autoimmune myocarditis and prevented long-term myocardial damages28. Additionally, heat-shock-mediated apoptosis in prostate cells was accelerated in these animals, proving again the involvement of clusterin in programmed cell death29. In reference to such reports, as well as on previous observations on clusterin induction and accumulation in thymi, the present study has aimed to resolve the issue regarding a putative pro- or anti-apoptotic role of clusterin in rat thymocytes. Since developing immature thymocytes are susceptible to apoptosis during maturation30, the thymus is an excellent organ to analzye such programmed cell death-associated phenomena. Based on our observations, we propose that apoptosis of thymocytes is not associated with an induction of clusterin expression. However, the role of constitutively expressed clusterin in thymic tissues and thymocytes remains still undetermined. Further studies, using clusterin-specific antibodies and the use of whole tissue section of apoptosis-induced organs will provide some clues on such questions.
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References
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Acknowledgements
This work was supported by grant No. R05-2001-000-00464-0 from the Basic Research Program of the Korea Science and Engineering Foundation. The authors are very thankful to M.L. Cowan for corrections and suggestions to the text.
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PARK, JH., PARK, JS., JU, SK. et al. Clusterin mRNA expression in apoptotic and activated rat thymocytes. Cell Res 13, 49–58 (2003). https://doi.org/10.1038/sj.cr.7290150
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DOI: https://doi.org/10.1038/sj.cr.7290150
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