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Polymorphisms of Two Indels at the PRNP Gene in Three Beef Cattle Herds

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Abstract

Bovine spongiform encephalopathy (BSE) is a transmissible fatal neurodegenerative disorder, presenting a characteristic spongiform degeneration of cattle brain due to the accumulation of a pathogenic and protease-resistant infectious protein (prion). Two deletion/insertion polymorphisms of the prion protein gene (23 bp at the promoter region and 12 bp at intron 1) were analyzed in three beef cattle herds (Aberdeen Angus, Charolais, and Franqueiro) to verify allele frequencies for possible use in selection of resistant animals. High frequencies of susceptibility alleles (23 and 12 bp deletion) and haplotype (23 del/12 del) were observed in the Aberdeen Angus and Charolais herds, but Franqueiro presented one of the highest frequencies of resistant alleles so far described. These data indicate the need for selection in Aberdeen Angus and Charolais breeds to increase the frequency of resistant animals in order to reduce the probabilities of BSE outbreaks in these populations.

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References

  • Balbus N, Humeny A, Kashkevich K, Henz I, Fischer C, Becker C, Schiebel K (2005) DNA polymorphisms of the prion doppel gene region in four different German cattle breeds and cows tested positive for bovine spongiform encephalopathy. Mamm Gen 16:884–892

    Article  CAS  Google Scholar 

  • Choi S-H, Kim I-C, Kim D-S, Kim D-W, Chae S-H, Choi H-H, Choi I, Yeo J-S, Song M-N, Park H-S (2006) Comparative genomic organization of the human and bovine PRNP locus. Genomics 87:598–607

    Article  PubMed  CAS  Google Scholar 

  • Clawson ML, Heaton MP, Keele JW, Smith TPL, Harhay GP, Laegreid WW (2006) Prion gene haplotypes of U.S. cattle. BMC Genet 7:51

    Article  PubMed  CAS  Google Scholar 

  • Comincini S, Castiglioni BM, Foti GM, Del Vecchio I, Ferretti L (2001a) Isolation and molecular characterization of rasfadin, a novel gene in the vicinity of the bovine prion gene. Mamm Gen 12:150–156

    Article  CAS  Google Scholar 

  • Comincini S, Foti MG, Tranulis MA, Hills D, Di Guardo G, Vaccari G, Williams JL, Harbitz I, Ferretti L (2001b) Genomic organization, comparative analysis, and genetic polymorphisms of the bovine and ovine prion Doppel genes (PRND). Mamm Gen 12:729–733

    Article  CAS  Google Scholar 

  • Czarnik U, Zabolewicz T, Strychalski J, Grzybowski G, Bogusz M, Walawski K (2007) Deletion/insertion polymorphism of the prion protein gene (PRNP) in Polish Holstein-Friesian cattle. Appl Genet 48:69–71

    Google Scholar 

  • Geldermann H, Preuss S, Eckert J, Han Y, Ollesch K (2003) Analysis of polymorphic microsatellites within the bovine and ovine prion protein (PRNP) genes. Anim Genet 34:283–289

    Article  PubMed  CAS  Google Scholar 

  • Geldermann H, He H, Bobal P, Bartenschlager H, Preuß S (2006) Comparison of DNA variants in the PRNP and NF1 regions between bovine spongiform encephalopathy and control cattle. Anim Genet 37(5):469–474

    Article  PubMed  CAS  Google Scholar 

  • Goldmann W, Hunter N, Martin T, Dawson M, Hope J (1991) Different forms of the bovine PrP gene have five or six copies of a short, G-C-rich element within the protein-coding exon. J Gen Virol 72:201–204

    Article  PubMed  CAS  Google Scholar 

  • Hills D, Comincini S, Schlaepfer J, Dolf G, Ferretti L, Williams JL (2001) Complete genomic sequence of the bovine prion gene (PRNP) and polymorphism in its promoter region. Anim Genet 32:231–232

    Article  PubMed  CAS  Google Scholar 

  • Hills D, Schlaepfer J, Comincini S, MacLean I, Dolf G, Ferretti L, Olsaker I, Williams JL (2003) Sequence variation in the bovine and ovine PRNP genes. Anim Genet 34:183–190

    Article  PubMed  CAS  Google Scholar 

  • Humeny A, Schiebel K, Seeber S, Becker CM (2002) Identification of polymorphisms within the bovine prion protein gene (Prnp) by DNA sequencing and genotyping by MALDI-TOF-MS. Neurogenetics 4:59–60

    Article  PubMed  CAS  Google Scholar 

  • Juling K, Schwarzenbacher H, Williams JL, Fries R (2006) A major genetic component of BSE susceptibility. BMC Biol 4:33

    Article  PubMed  CAS  Google Scholar 

  • Kashkevich K, Humeny A, Ziegler U, Groschup MH, Nicken P, Leeb T, Fischer C, Becker C-M, Schiebel K (2007) Functional relevance of DNA polymorphisms within the promoter region of the prion protein gene and their association to BSE infection. FASEB J 21(7):1547–1555

    Article  PubMed  CAS  Google Scholar 

  • Lewontin RC (1988) On measures of gametic disequilibrium. Genetics 120:849–852

    PubMed  CAS  Google Scholar 

  • Makrinou E, Collinge J, Antoniou M (2002) Genomic characterization of the human prion protein (PrP) gene locus. Mamm Gen 13:696–703

    Article  CAS  Google Scholar 

  • Miller SA, Dykes DD, Polesky HF (1988) A simple salting out procedure for extracting DNA from human nucleated cells. Nucl Acid Res 16:1215

    Article  CAS  Google Scholar 

  • Moore RC, Lee IY, Silverman GL, Harrison PM, Strome R, Heinrich C, Karunaratne A, Pasternak SH, Chishti MA, Liang Y, Mastrangelo P, Wang K, Smit AF, Katamine S, Carlson GA, Cohen FE, Prusiner SB, Melton DW, Tremblay P, Hood LE, Westaway D (1999) Ataxia in prionprotein (PrP)-deficient mice is associated with upregulation ofthe novel PrP-like protein doppel. J Mol Biol 292:797–817

    Article  PubMed  CAS  Google Scholar 

  • Nakamitsu S, Miyazawa T, Horiuchi M, Onoe S, Ohoba Y, Kitagawa H, Ishiguro N (2006) Sequence variation of bovine prion protein gene in Japanese Cattle (Holstein and Japanese Black). J Vet Med Sci 68:27–33

    Article  PubMed  CAS  Google Scholar 

  • Novakofski J, Brewer MS, Mateus-Pinilla N, Killefer J, McCusker RH (2005) Prion biology relevant to bovine spongiform encephalopathy. J Anim Sci 83:1455–1476

    PubMed  CAS  Google Scholar 

  • Premzl M, Gamulin V (2007) Comparative genomic analysis of prion genes. BMC Gen 8:1–14

    Article  CAS  Google Scholar 

  • Premzl M, Sangiorgio L, Strumbo B, Graves JAM, Simonic T, Gready JE (2003) Shadoo, a new protein highly conserved from fish to mammals and with similarity to prion protein. Gene 314:89–102

    Article  PubMed  CAS  Google Scholar 

  • Prusiner B (1998) Prions. Proc Natl Acad Sci USA 95:13363–13383

    Article  PubMed  CAS  Google Scholar 

  • Sambrook J, Russell DW (2001) Molecular cloning. A laboratory manual. Cold Spring Harbor Press, New York

    Google Scholar 

  • Sander P, Hamann H, Pfeiffer I, Wemheuer W, Brenig B, Groschup MH, Ziegler U, Distl O, Leeb T (2004) Analysis of sequence variability of the bovine prion protein gene (PRNP) in German cattle breeds. Neurogenetics 5:19–25

    Article  PubMed  CAS  Google Scholar 

  • Sander P, Hamann H, Drögemüller C, Kashkevich K, Schiebel K, Leeb T (2005) Bovine prion protein gene (PRNP) promoter polymorphisms modulate PRNP expression and may be responsible for differences in bovine spongiform encephalopathy susceptibility. J Biol Chem 280:37408–37414

    Article  PubMed  CAS  Google Scholar 

  • Seabury CM, Honeycutt RL, Rooney AP, Halbert ND, Derr JN (2004a) Prion protein gene (PRNP) variants and evidence for strong purifying selection in functionally important regions of bovine exon 3. Proc Natl Acad Sci USA 101:15142–15147

    Article  PubMed  CAS  Google Scholar 

  • Seabury CM, Womack JE, Piedrahita J, Derr JN (2004b) Comparative PRNP genotyping of U.S. cattle sires for potential association with BSE. Mamm Genome 15:828–833

    Article  PubMed  CAS  Google Scholar 

  • Smith PG (2003) The epidemics of bovine spongiform encephalopathy and variant Creutzfeldt-Jakob disease: current status and future prospects. Bull WHO 81:123–130

    PubMed  Google Scholar 

  • Steigleder CS, Almeida EA, Weimer TA (2004) Genetic diversity of a Brazilian creole cattle based on fourteen microsatellite loci. Arch Zootec 53:3–11

    Article  CAS  Google Scholar 

  • Takasuga A, Abe T, Ito T, Watanabe T, Kamatani N, Sugimoto Y (2003) Novel prion protein polymorphisms in cattle. Anim Genet 34:396–397

    Article  PubMed  CAS  Google Scholar 

  • Weissmann C (2004) The state of prion. Nature Rev 2:861–869

    Article  CAS  Google Scholar 

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Correspondence to Tania de Azevedo Weimer.

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Kerber, A.R., Hepp, D., Passos, D.T. et al. Polymorphisms of Two Indels at the PRNP Gene in Three Beef Cattle Herds. Biochem Genet 46, 1–7 (2008). https://doi.org/10.1007/s10528-007-9113-y

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  • DOI: https://doi.org/10.1007/s10528-007-9113-y

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