Abstract
Strain C3-5T, a Gram-negative, asporogenous, rod-shaped bacterium, was isolated from a tetrabromobisphenol A contaminated soil. Growth was observed at 10–37 °C (optimum 30 °C) and at pH 5.5–9.5 (optimum pH 7.0). Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain C3-5T is a member of the genus Terrimonas and exhibits high sequence similarities with Terrimonas pekingensis QHT (99.0%) and Terrimonas rhizosphaerae CR94T (97.3%), and exhibits low (<97%) sequence similarities with other known Terrimonas species. Chemotaxonomic analysis revealed that strain C3-5T possesses menaquinone-7 (MK-7) as the major isoprenoid quinone and iso-C15:0, iso-C15:1 G, iso-C17:0 3-OH and summed feature 3 (C16:1 ω6c and/or C16:1 ω7c) as the major (>5% of total) fatty acids. The polar lipids were determined to be a lipid, glycolipid, phospholipid, phosphoaminolipid and phosphatidylethanolamine. The DNA G+C content was found to be 42.6 mol%. The DNA–DNA relatedness values with the closely related strains T. pekingensis QHT and T. rhizosphaerae CR94T were 25.2 and 48.5%, respectively. Based on phylogenetic analysis, phenotypic characteristics and chemotaxonomic data, strain C3-5T is considered to represent a novel species of the genus Terrimonas, for which the name Terrimonas suqianensis sp. nov. is proposed. The type strain is C3-5T (= CCTCC AB 2017042T = KCTC 52676T).
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Abbreviations
- CCTCC:
-
China Center for Type Culture Collection
- CICC:
-
China Center of Industrial Culture Collection
- KACC:
-
Kankakee Area Career Center
- KCTC:
-
Korean Collection for Type Cultures
References
Bernardet JF, Nakagawa Y, Holmes B (2002) Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52:1049–1070
Buck JD (1982) Nonstaining (KOH) method for determination of gram reactions of marine bacteria. Appl Environ Microbiol 44:992–993
Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230
Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Evol Microbiol 39:224–229
Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
Han SI, Lee YR, Kim JO, Whang KS (2016) Terrimonas rhizosphaerae sp. nov., isolated from ginseng rhizosphere soil. Int J Syst Evol Microbiol. doi:10.1099/ijsem.0.001639
Jiang F, Qiu X, Chang X, Qu Z, Ren L, Kan W, Guo Y, Fang C, Peng F (2014) Terrimonas arctica sp. nov., isolated from Arctic tundra soil. Int J Syst Evol Microbiol 64:3798–3803
Jin D, Wang P, Bai Z, Jin B, Yu Z, Wang X, Zhuang G, Zhang H (2013) Terrimonas pekingensis sp. nov., isolated from bulking sludge, and emended descriptions of the genus Terrimonas, Terrimonas ferruginea, Terrimonas lutea and Terrimonas aquatica. Int J Syst Evol Microbiol 63:1658–1664
Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721
Kim MC, Kang OC, Kim CM, Zhang Y, Liu Z, Wei Z, Huang Y, Danzeng W, Peng F (2016) Terrimonas crocea sp. nov., isolated from the till of high Arctic glacier Midtre Lovénbreen in the West Svalbard Archipelago. Int J Syst Evol Microbiol. doi:10.1099/ijsem.0.001689
Lane DL (1991) 16S/23S rRNA sequencing. In: Stackebrandt ER, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, Chichester, pp 115–175
Mandel M, Marmur J (1968) Use of ultraviolet absorbance-temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B:195–206
Mccarthy AJ, Cross T (1984) A taxonomic study of Thermomonospora and other monosporic Actinomycetes. Microbiol-SGM 130:5–25
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory, New york
Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI, Newark, DE
Sheu SY, Cho NT, Arun AB, Chen WM (2010) Terrimonas aquatica sp. nov., isolated from a freshwater spring. Int J Syst Evol Microbiol 60:2705–2709
Smibert RM, Krieg NR (1994) Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC
Tamaoka J, Katayama-Fujimura Y, Kuraishi H (1983) Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54:31–36
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882
Tindall BJ (1990a) A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13:128–130
Tindall BJ (1990b) Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Letts 66:199–202
Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE (1987) International committee on systematic bacteriology: report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464
Xie CH, Yokota A (2006) Reclassification of [Flavobacterium] ferrugineum as Terrimonas ferruginea gen. nov., comb. nov., and description of Terrimonas lutea sp. nov., isolated from soil. Int J Syst Evol Microbiol 56:1117–1121
Zhang J, Gu T, Zhou Y, He J, Zheng LQ, Li WJ, Huang X, Li SP (2012) Terrimonas rubra sp. nov., isolated from a polluted farmland soil and emended description of the genus Terrimonas. Int J Syst Evol Microbiol 62:2593–2597
Acknowledgements
This work was financially supported through grants from the National Natural Science Foundation of China (31400105; 31600080), the China Postdoctoral Science Foundation (2015T80562; 2014M561666) and the Natural Science Foundation of Shandong Province, China (ZR2016CB29).
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The authors declare that there are no conflicts of interest related to this paper.
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Chen, Q., Zang, XX., Hang, X. et al. Terrimonas suqianensis sp. nov., isolated from a tetrabromobisphenol A-contaminated soil. Antonie van Leeuwenhoek 110, 1061–1068 (2017). https://doi.org/10.1007/s10482-017-0879-6
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DOI: https://doi.org/10.1007/s10482-017-0879-6