Skip to main content
Log in

Verification of a loss of heterozygosity at the D8S1179 locus in a paternity case by the MiSeq FGx system

  • Case Report
  • Published:
International Journal of Legal Medicine Aims and scope Submit manuscript

Abstract

Capillary electrophoresis is widely used to study short tandem repeats (STRs) in forensic genetics. However, next-generation sequencing platforms have become a new strategy for forensic DNA typing. In this study, we report a false four-step STR mutation between an alleged father (AF) and child in a paternity case. A total of 23 autosomal STR loci were evaluated using the Huaxia™ Platinum and Goldeneye™ 20A kits, revealing a single mismatch in D8S1179 between the AF (10/10) and the male child (14/14). Additional Y-STR typing of the AF and child was performed, and the results were consistent with those based on 27 Y-STR loci. To further confirm the experimental results, we sequenced the individuals using the MiSeq FGx system and detected 10/15 unbalanced alleles in the D8S1179 locus of the AF and 14/15 unbalanced alleles in the D8S1179 locus of the child. Sanger sequencing revealed that both the AF and child had the C→G point mutation in the primer binding region of D8S1179 resulting in allelic dropout. Therefore, the verification of STR typing by different sequencing systems is helpful for the interpretation of results in cases of multistep STR mutations.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

Data availability

All the data have been reported in the manuscript.

References

  1. Brettell TA, Butler JM, Saferstein R (2005) Forensic science. Anal Chem 77(12):3839–3860

    Article  CAS  PubMed  Google Scholar 

  2. Brettell TA, Butler JM, Almirall JR (2011) Forensic science. Anal Chem 83(12):4539–4556

    Article  CAS  PubMed  Google Scholar 

  3. Jia YS, Zhang L, Qi LY, Mei K, Zhou FL, Huang DX et al (2015) Multistep microsatellite mutation leading to father-child mismatch of FGA locus in a case of non-exclusion parentage. Leg Med (Tokyo) 17(5):364–365

    Article  CAS  PubMed  Google Scholar 

  4. Cai GQ, Chen LX, Tong DY, Ou JH, Wu XY (2005) Mutations of 15 short tandem repeat loci in Chinese population. Zhonghua Yi Xue Yi Chuan Xue Za Zhi 22(5):507–509

    CAS  PubMed  Google Scholar 

  5. Lu D, Liu Q, Wu W, Zhao H (2012) Mutation analysis of 24 short tandem repeats in Chinese Han population. Int J Legal Med 126(2):331–335

    Article  PubMed  Google Scholar 

  6. Gjertson DW, Brenner CH, Baur MP, Carracedo A, Guidet F, Luque JA et al (2007) ISFG: recommendations on biostatistics in paternity testing. Forensic Sci Int Genet 1(3–4):223–231

    Article  PubMed  Google Scholar 

  7. Li C, Hou Y, Li L, Zhang S, Liu Y, Sun H (2018) Specification of parentage testing (in China). GB/T 37223-2018

  8. Dang Z, Liu Q, Zhang G, Li S, Wang D, Pang Q et al (2020) Population genetic data from 23 autosomal STR loci of Huaxia Platinum system in the Jining Han population. Mol Genet Genomic Med 8(4):e1142

    Article  PubMed  PubMed Central  Google Scholar 

  9. Leibelt C, Budowle B, Collins P, Daoudi Y, Moretti T, Nunn G et al (2003) Identification of a D8S1179 primer binding site mutation and the validation of a primer designed to recover null alleles. Forensic Sci Int 133(3):220–227

    Article  CAS  PubMed  Google Scholar 

  10. Lin H, Dong J, Zhong S, Tang J (2020) Allelic dropout of D18S51 from single nucleotide mutation in the primer zone. Forensic Sci Technol 45(02):201–203

  11. Wu J, Li JL, Wang ML, Li JP, Zhao ZC, Wang Q et al (2019) Evaluation of the MiSeq FGx system for use in forensic casework. Int J Legal Med 133(3):689–697

    Article  PubMed  Google Scholar 

  12. Levinson G, Gutman GA (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4(3):203–221

    CAS  PubMed  Google Scholar 

  13. Brinkmann B, Klintschar M, Neuhuber F, Huhne J, Rolf B (1998) Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat. Am J Hum Genet 62(6):1408–1415

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Brenner CH (2009) Mutations in paternity. http://www.dna-view.com/mudisc.htm

  15. Liu YX, Zhang WQ, Jia YS, Zhang L, Zhou FL, Mei K et al (2015) Multistep microsatellite mutation in a case of non-exclusion parentage. Forensic Sci Int Genet 16:205–207

    Article  CAS  PubMed  Google Scholar 

Download references

Funding

This work was supported by the Student’s Platform for Innovation and Entrepreneurship Training Program (S202010443001, cx2020001), The Project of Teaching Reform Research for Shandong Province Undergraduate University (M2020069), and the Supporting Fund for Teachers’ Research of Jining Medical University (JYFC2018FY003).

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Yequan Wang or Zhen Dang.

Ethics declarations

Ethics approval

Approval was obtained from the ethics committee of Jining Medical University (No. JNMC-2021-YX-008). The procedures used in this study adhere to the tenets of the Declaration of Helsinki.

Consent to participate

Informed consent was obtained from all the individual participants included in the study.

Conflict of interest

The authors declare no competing interests.

Additional information

Publisher's note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary Information

Below is the link to the electronic supplementary material.

Supplementary file1 (DOCX 2953 KB)

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Wang, Y., Hou, X., Liu, Q. et al. Verification of a loss of heterozygosity at the D8S1179 locus in a paternity case by the MiSeq FGx system. Int J Legal Med 137, 1407–1412 (2023). https://doi.org/10.1007/s00414-023-03043-9

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00414-023-03043-9

Keywords

Navigation