Abstract
Capillary electrophoresis is widely used to study short tandem repeats (STRs) in forensic genetics. However, next-generation sequencing platforms have become a new strategy for forensic DNA typing. In this study, we report a false four-step STR mutation between an alleged father (AF) and child in a paternity case. A total of 23 autosomal STR loci were evaluated using the Huaxia™ Platinum and Goldeneye™ 20A kits, revealing a single mismatch in D8S1179 between the AF (10/10) and the male child (14/14). Additional Y-STR typing of the AF and child was performed, and the results were consistent with those based on 27 Y-STR loci. To further confirm the experimental results, we sequenced the individuals using the MiSeq FGx system and detected 10/15 unbalanced alleles in the D8S1179 locus of the AF and 14/15 unbalanced alleles in the D8S1179 locus of the child. Sanger sequencing revealed that both the AF and child had the C→G point mutation in the primer binding region of D8S1179 resulting in allelic dropout. Therefore, the verification of STR typing by different sequencing systems is helpful for the interpretation of results in cases of multistep STR mutations.
Similar content being viewed by others
Data availability
All the data have been reported in the manuscript.
References
Brettell TA, Butler JM, Saferstein R (2005) Forensic science. Anal Chem 77(12):3839–3860
Brettell TA, Butler JM, Almirall JR (2011) Forensic science. Anal Chem 83(12):4539–4556
Jia YS, Zhang L, Qi LY, Mei K, Zhou FL, Huang DX et al (2015) Multistep microsatellite mutation leading to father-child mismatch of FGA locus in a case of non-exclusion parentage. Leg Med (Tokyo) 17(5):364–365
Cai GQ, Chen LX, Tong DY, Ou JH, Wu XY (2005) Mutations of 15 short tandem repeat loci in Chinese population. Zhonghua Yi Xue Yi Chuan Xue Za Zhi 22(5):507–509
Lu D, Liu Q, Wu W, Zhao H (2012) Mutation analysis of 24 short tandem repeats in Chinese Han population. Int J Legal Med 126(2):331–335
Gjertson DW, Brenner CH, Baur MP, Carracedo A, Guidet F, Luque JA et al (2007) ISFG: recommendations on biostatistics in paternity testing. Forensic Sci Int Genet 1(3–4):223–231
Li C, Hou Y, Li L, Zhang S, Liu Y, Sun H (2018) Specification of parentage testing (in China). GB/T 37223-2018
Dang Z, Liu Q, Zhang G, Li S, Wang D, Pang Q et al (2020) Population genetic data from 23 autosomal STR loci of Huaxia Platinum system in the Jining Han population. Mol Genet Genomic Med 8(4):e1142
Leibelt C, Budowle B, Collins P, Daoudi Y, Moretti T, Nunn G et al (2003) Identification of a D8S1179 primer binding site mutation and the validation of a primer designed to recover null alleles. Forensic Sci Int 133(3):220–227
Lin H, Dong J, Zhong S, Tang J (2020) Allelic dropout of D18S51 from single nucleotide mutation in the primer zone. Forensic Sci Technol 45(02):201–203
Wu J, Li JL, Wang ML, Li JP, Zhao ZC, Wang Q et al (2019) Evaluation of the MiSeq FGx system for use in forensic casework. Int J Legal Med 133(3):689–697
Levinson G, Gutman GA (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4(3):203–221
Brinkmann B, Klintschar M, Neuhuber F, Huhne J, Rolf B (1998) Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat. Am J Hum Genet 62(6):1408–1415
Brenner CH (2009) Mutations in paternity. http://www.dna-view.com/mudisc.htm
Liu YX, Zhang WQ, Jia YS, Zhang L, Zhou FL, Mei K et al (2015) Multistep microsatellite mutation in a case of non-exclusion parentage. Forensic Sci Int Genet 16:205–207
Funding
This work was supported by the Student’s Platform for Innovation and Entrepreneurship Training Program (S202010443001, cx2020001), The Project of Teaching Reform Research for Shandong Province Undergraduate University (M2020069), and the Supporting Fund for Teachers’ Research of Jining Medical University (JYFC2018FY003).
Author information
Authors and Affiliations
Corresponding authors
Ethics declarations
Ethics approval
Approval was obtained from the ethics committee of Jining Medical University (No. JNMC-2021-YX-008). The procedures used in this study adhere to the tenets of the Declaration of Helsinki.
Consent to participate
Informed consent was obtained from all the individual participants included in the study.
Conflict of interest
The authors declare no competing interests.
Additional information
Publisher's note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
Below is the link to the electronic supplementary material.
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Wang, Y., Hou, X., Liu, Q. et al. Verification of a loss of heterozygosity at the D8S1179 locus in a paternity case by the MiSeq FGx system. Int J Legal Med 137, 1407–1412 (2023). https://doi.org/10.1007/s00414-023-03043-9
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00414-023-03043-9