De novo fatty-acid synthesis protects invariant NKT cells from cell death, thereby promoting their homeostasis and pathogenic roles in airway hyperresponsiveness

Invariant natural-killer T (iNKT) cells play pathogenic roles in allergic asthma in murine models and possibly also humans. While many studies show that the development and functions of innate and adaptive immune cells depend on their metabolic state, the evidence for this in iNKT cells is very limited. It is also not clear whether such metabolic regulation of iNKT cells could participate in their pathogenic activities in asthma. Here, we showed that acetyl-coA-carboxylase 1 (ACC1)-mediated de novo fatty-acid synthesis is required for the survival of iNKT cells and their deleterious functions in allergic asthma. ACC1, which is a key fatty-acid synthesis enzyme, was highly expressed by lung iNKT cells from WT mice that were developing asthma. Cd4-Cre::Acc1fl/fl mice failed to develop OVA-induced and HDM-induced asthma. Moreover, iNKT cell-deficient mice that were reconstituted with ACC1-deficient iNKT cells failed to develop asthma, unlike when WT iNKT cells were transferred. ACC1 deficiency in iNKT cells associated with reduced expression of fatty acid-binding proteins (FABPs) and peroxisome proliferator-activated receptor (PPAR)γ, but increased glycolytic capacity that promoted iNKT-cell death. Furthermore, circulating iNKT cells from allergic-asthma patients expressed higher ACC1 and PPARG levels than the corresponding cells from non-allergic-asthma patients and healthy individuals. Thus, de novo fatty-acid synthesis prevents iNKT-cell death via an ACC1-FABP-PPARγ axis, which contributes to their homeostasis and their pathogenic roles in allergic asthma.


Introduction
Invariant natural-killer T (iNKT) cells are a subset of innate T cells that express a restricted T-cell receptor (TCR) repertoire (Vα24-Jα18 in humans and Vα14-Jα18 in mice) and respond to glycolipids presented on the CD1d molecule.One such glycolipid is α-galactosylceramide (α-GalCer), which originates from a marine sponge and strongly activates iNKT cells in vitro and in vivo (Allende et al., 2008;Brossay et al., 1998).Once activated, iNKT cells secrete a diverse array of cytokines, including interferon (IFN)γ, interleukin (IL)-4, IL-13, IL-17A, and IL-10 (Abdollahi-Roodsaz et al., 2008).These iNKT cell-derived cytokines play important roles in the pathogenesis of various immunological diseases, including sepsis, arthritis, tumors, and asthma (Osuchowski et al., 2018;Ma et al., 2018;Terabe and Berzofsky, 2018;Kim et al., 2005).With regard to the latter, iNKT cells are one of the key effectors that promote allergic asthma in murine models.Specifically, by secreting IL-4, iNKT cells stimulate the differentiation of T-helper (Th)2 cells and their responses.Moreover, by secreting IL-13, iNKT cells promote the contraction of airway smooth muscle, which is a cardinal feature of asthma (Akbari et al., 2003;Manson et al., 2020).In addition, we recently reported that iNKT cells contribute to the development of asthma by secreting X-C motif chemokine ligand-1, which recruits conventional X-C motif chemokine receptor 1-expressing type-1 dendritic cells into the lungs: this then stimulates the Th2 responses that drive asthma (Woo et al., 2018).Thus, iNKT cell-derived soluble factors play multiple critical roles in the development of allergic asthma in murine models.It should be noted that it is somewhat unclear what role iNKT cells play in human asthma.Several studies suggest that human asthmatic airways contain large numbers of iNKT cells, but this was not observed by other studies (Akbari et al., 2006;Das et al., 2006;Foell et al., 2007;Hamzaoui et al., 2006;Pham-Thi et al., 2006;Thomas et al., 2006).However, a recent review describes additional lines of evidence that suggest that iNKT cells do contribute to the development and exacerbation of human asthma development, although the mechanisms may not necessarily involve increased iNKT cell frequencies.Thus, further research on the roles of iNKT cells in mouse models and humans with asthma is needed to improve our understanding of the pathogenesis of this disease.
Many studies show that the development and functions of innate and adaptive immune cells are dependent on the metabolic states of these cells (Jung et al., 2019).In particular, the metabolic balance between glycolysis and oxidative phosphorylation (OXPHOS) shapes the differentiation and functions of CD4 + Th cells, Foxp3 + regulatory T cells (Tregs), cytotoxic CD8 + T cells, and macrophages (Ganeshan and Chawla, 2014).The development and functions of iNKT cells may also depend on their metabolism: while the evidence to date is quite limited (Yarosz et al., 2021), the thymic development of iNKT cells and their inflammatory cytokine production as mature cells associate with changes in their glycolysis:OXPHOS balance (Kim et al., 2017).Moreover, peripheral iNKT-cell functions are regulated by their levels of reactive oxygen species, which are by-products of aerobic metabolism (Kumar et al., 2019).It is also possible that immune-cell metabolism may participate in asthma since a recent study showed that fatty acid-oxidation inhibitors alleviate house-dust mite (HDM)-induced airway inflammation (Al-Khami et al., 2017).Similarly, the airway Th2 cells that mediate allergic responses against HDM depend on glycolysis and lipid metabolism (Tibbitt et al., 2019).
Several studies show that lipid biogenesis, which is a major metabolic pathway, also affects the differentiation and functions of conventional CD4 + T cells (Berod et al., 2014;Soroosh et al., 2014;Wang et al., 2015): for example, a CD5-like molecule enforces low cholesterol biosynthesis in Th17 cells, which limits ligand availability for Rorγt, the Th17 master transcription factor, thereby preventing Th17 cells from becoming pathogenic and inducing autoimmunity (Tibbitt et al., 2019).Similarly, several studies show that acetyl-CoA-carboxylase 1 (ACC1) affects multiple T-cell subsets.ACC1 is a key fatty-acid synthesis enzyme in the cytosol that catabolizes the ATP-dependent carboxylation of acetyl-CoA to malonyl-CoA (Wakil and Abu-Elheiga, 2009), and its downregulation impairs the peripheral persistence and homeostatic proliferation of CD8 + T cells, augments Treg development from naïve CD4 + T cells and their suppressive functions, blocks the development of Th17 cells from naïve CD4 + T cells (Berod et al., 2014;Huang et al., 2014), impairs the formation of IL-5-producing CD4 + T cells (Nakajima et al., 2021), and promotes CD4 + T cell development (Endo et al., 2019).
The T-cell changes caused by inhibiting ACC1 reduce disease severity in murine models of listeria infection, chronic graft-versus-host disease, multiple sclerosis (Lee et al., 2014), and T cell-mediated asthma (Nakajima et al., 2021); it also promotes resistance to parasites (Endo et al., 2019).Thus, by shaping fatty-acid synthesis, ACC1 can alter pathogenic and protective T-cell responses.
To our knowledge, the role(s) of ACC1-mediated fatty-acid synthesis in other immune cells, including iNKT cells, and in asthma have not been assessed.In this study, we used ACC1-deficient (Cd4-Cre::Acc1 fl/fl ) mice and adoptive transfer experiments to determine whether ACC1-mediated fatty-acid metabolism in iNKT cells participates in the development of asthma.Indeed, we found that ACC1 promotes the survival of iNKT cells by regulating a fatty acid-binding protein (FABP)-PPARγ axis that can downregulate glycolysis.The improved ACC1-mediated iNKT-cell survival shapes the homeostasis and functions of these cells, which in turn promote the development of ovalbumin (OVA)or HDM-induced allergic asthma in mice.We also observed that the ACC1-FABP-PPARγ axis may be active in patients with allergic asthma but not controls.

Results
Activated iNKT cells express high levels of a fatty-acid synthesisrelated gene whose deletion blocks allergen-induced asthma To determine whether intracellular metabolic processes in iNKT cells play important roles in allergic asthma, iNKT cells sorted from the lungs of OVA-induced asthma model mice were assessed for the expression of key enzymes involved in glycolysis, the tricarboxylic acid (TCA) cycle, β-oxidation, and fatty-acid synthesis (Figure 1).Indeed, OVA challenge significantly increased iNKT cell expression of β-oxidation and fatty-acid synthesis enzymes and tended to elevate TCA-cycle enzyme expression.However, glycolysis-enzyme expression remained low (Figure 1A, B).The significantly upregulated fatty-acid synthesis enzymes were Acc1, Fasn, and Oxsm: Acc1 and Fasn play a particularly key role in de novo fatty-acid synthesis.Notably, when purified murine iNKT cells and conventional CD4 + and CD8 + T cells were activated in vitro with anti-CD3/CD28, the iNKT cells expressed much higher levels of Acc1 and Fasn than the other cells.By contrast, the CD4 + and CD8 + T cells expressed higher levels of TCA cycle (Sdh2b and Idh1a) and glycolysis (Hk2 and Pkm2) enzymes, respectively (Figure 1C).This is consistent with the previous gene set enrichment analysis of Oh et al.: when they compared unstimulated murine iNKT and CD4 + T cells to each other, they found that genes involved in the 'lipid, fatty acid and steroid metabolism' pathway were enriched in iNKT cells (Figure 1-figure supplement 1A; Oh et al., 2011).Thus, iNKT cells express Acc1 and Fasn when they are stimulated, including in asthma, whereas conventional CD4 + and CD8 + T cells do not.
We then focused on ACC1.To test whether ACC1-mediated de novo fatty-acid synthesis in iNKT cells shapes AHR and allergic immune responses, we generated Cd4-Cre::Acc1 fl/fl mice: the CD4positive cells (i.e.conventional CD4 + T and iNKT cells) in these mice cannot express ACC1.Since conventional CD4 + T cells did not upregulate ACC1 when stimulated in vitro or in vivo (Figure 1B and C), the knockout is likely to be physiologically relevant for iNKT cells only.When the Cd4-Cre::Acc1 fl/ fl and Acc1 fl/fl control mice were induced to undergo OVA-mediated asthma, we indeed observed that the loss of ACC1 expression attenuated AHR (Figure 1D) and the total immune-cell numbers in the lung and the bronchoalveolar lavage fluid (BALF) (Figure 1-figure supplement 1B).These changes associated with significantly decreased total lymphocyte, neutrophil, eosinophil, and macrophage frequencies in the BALF (Figure 1-figure supplement 1C) and lower eosinophil frequencies in the lung (Figure 1-figure supplement 1D).The lung CD8+ T cell and alveolar-and interstitialmacrophage frequencies did not change.Importantly, the total lung CD4+ T cell population (excluding iNKT cells) also did not change significantly (Figure 1-figure supplement 1D).By contrast, there was a sharp drop in iNKT cells in the lung; this was also associated with a significant increase in PI staining (Figure 1E).qRT-PCR analysis of the conventional lung CD4+ T cell population (excluding iNKT cells) showed that loss of ACC1 expression associated with lower Gata3, Il4, Il5, and Il13 expression but similar Tbx21, Rorc, Foxp3, Ifng, Il17a, and Il10 expression (Figure 1-figure supplement 1E, F).Indeed, when the lung iNKT cells and conventional CD4+ T cells were separately isolated, both iNKT cells and the conventional CD4 + T cells demonstrated dramatically lower Il4 and Il13 expression but similar Ifng and Il17a expression (Figure 1F, Figure 1-figure supplement 1F).Notably, all of these findings were recapitulated when we conducted the same analyses in mice that underwent  supplement 1G-K).Thus, the inability of lung iNKT cells to express ACC1 induced iNKT-cell death during allergen-induced asthmogenesis.This also reduced their expression of Gata3, Il4, Il5, and Il13 in lung conventional CD4 + T cells: these effects markedly reduced the eosinophilia and AHR.These effects were independent of the inability of conventional lung CD4+ T cells to express ACC1 in the mice.
ACC1-deficient iNKT cells cannot generate α-GalCer-mediated AHR and their adoptive transfer into iNKT cell-deficient mice cannot restore allergen-induced asthma The experiments above suggest that iNKT cells alone mediate ACC1-mediated regulation of airway inflammation.To test this further, we challenged Cd4-Cre::Acc1 fl/fl and Acc1 fl/fl mice intranasally with α-GalCer, which has been shown previously to induce iNKT cell activation-mediated AHR (Meyer et al., 2006).Consistent with the results from OVA-and HDM-induced asthma models, the Cd4-Cre::Acc1 fl/fl mice showed the following: less AHR and lung and BALF inflammation; significantly fewer lymphocytes, neutrophils, and macrophages in the BALF; less eosinophilia in the BALF and lungs; no difference in lung CD4 + and CD8 + T cell frequencies but significantly fewer lung iNKT cells and greater PI staining of these cells; lower expression by the lung conventional CD4 + T cell population of Gata3, Il4, Il5, and Il13 but not Tbx21, Rorc, Foxp3, Ifng, Il17a, or Il10; and similar Ifng and Il17a expression but dramatically reduced Il4 and Il13 expression by the lung iNKT cells (Figure 2A-H).Thus, ACC1deficient iNKT cells also failed to promote α-GalCer-induced AHR.
To further confirm that it is the ACC1 in iNKT cells that regulated AHR, we adoptively transferred an equal number of WT iNKT cells (i.e. from Acc1 fl/fl mice) or ACC1-deficient iNKT cells into Jα18 KO mice, which lack NKT cells (Chandra et al., 2015).The mice were then subjected to OVA-induced asthma.The WT iNKT cells, but not the ACC1-deficient iNKT cells, restored the following features: AHR (Figure 3A); the high total immune-cell numbers in the BALF and lungs (Figure 3B); the high lymphocyte, neutrophil, eosinophil, and macrophage frequencies in the BALF and lungs (Figure 3C and D); the high Gata3, Il4, Il5, and Il13 expression by the lung CD4 + T cell population (Figure 3E and  F).As expected, neither adoptively transferred cell type affected the Tbx21, Rorc, Foxp3, Ifng, Il17a, and Il10 expression by the lung conventional CD4 + T cell population (Figure 3E and F).Moreover, the transfer of WT iNKT cells restored the iNKT cell numbers in the lungs and their expression of Il4 and Il13 without changing their Ifng and Il17a expression; by contrast, transfer of ACC1-deficient iNKT cells led to very low iNKT-cell frequencies in the lung and low expression of all cytokines (Figure 3G  and H).In addition, the adoptively transferred ACC1-deficient iNKT cells in the lung displayed more apoptosis than the transferred WT iNKT cells (Figure 3I).Lastly, transfer of the WT iNKT cells associated with significantly higher histological lung scores than transfer of the ACC1-deficient iNKT cells (Figure 3J).Thus, ACC1-deficient iNKT cells cannot promote AHR in allergic asthma models.

ACC1-deficient iNKT cells exhibit defects in thymic development, homeostasis, and activation
To investigate the effects of ACC1-mediated metabolic programming on the development and function of iNKT cells, we examined the thymic development and peripheral homeostasis of iNKT cells in Cd4-Cre::Acc1 fl/fl mice.Mature Cd4-Cre::Acc1 fl/fl mice had fewer iNKT cells in the thymus, spleen, and liver than Acc1 fl/fl mice (Figure 3-figure supplement 1A).By contrast, the conventional CD4 + and CD8 + T cell numbers in the thymus and spleen were not affected by Cd4-Cre::Acc1 fl/fl (Figure 3-figure and Idh1a), and fatty-acid synthesis (Acc1 and Fasn) in CD8 + T, CD4 + T, and iNKT cells before and after CD3/CD28 stimulation.Representative results from two independent experiments (n = 4/group) are shown.(D-I) Cd4-CreAccl1 fl/fl mice and the Acc1 fl/fl control mice were subjected to OVA-induced asthma (D-F) or house-dust mite (HDM)-induced asthma (G-I).(D, G) Airway resistance.(E, H) Numbers and survival status of iNKT cells that were sorted from the lung by flow cytometry.(F, I) Cytokine expression in iNKT cells sorted from the lung.The data shown in (D-I) are pooled data from four independent experiments (n = 8/group).All data are presented as mean ± SEM. ns, not significant.*p<0.05,**p<0.01,***p<0.001,as determined by unpaired two-tailed t-tests.
This was tested further by generating mixed bone marrow (BM) chimera mice: thus, a 1:1 ratio of CD45.1 + WT BM cells and CD45.2 + Cd4Cre::Acc1 fl/fl BM cells were transferred into lethally irradiated CD45.2 + WT recipient mice (Figure 3-figure supplement 1D).The ACC1-deficient BM cells generated markedly fewer iNKT cells in the thymus, spleen, and liver than the WT BM cells (Figure 3figure supplement 1E, F).This confirmed that ACC1 deficiency induced an intrinsic defect in iNKT-cell thymic development and peripheral homeostasis.Moreover, when iNKT cells sorted from the livers of Cd4-Cre::Acc1 fl/fl and Acc1 fl/fl mice underwent TCR ligation with anti-CD3/CD28 in vitro, the ACC1deficient cells produced less CD69 activation marker and cytokine (Figure 3 Thus, ACC1 plays a cell-intrinsic role in the regulation of iNKT-cell thymic development, peripheral homeostasis, and activation.

Enhanced glycolysis promotes the cell death of ACC1-deficient iNKT cells
To investigate the mechanism(s) by which ACC1-mediated metabolic programming of iNKT cells promotes allergic asthma, we subjected the sorted unstimulated iNKT cells from Cd4-Cre::Acc1 fl/fl and Acc1 fl/fl mice to transcriptome and metabolome analyses (Figure 4A-D).The ACC1-deficient iNKT cells displayed distinct metabolic reprogramming compared to WT iNKT cells.Specifically, they exhibited low fatty-acid synthesis but high glycolysis.Indeed, compared to WT iNKT cells, their extracellular acidification rate (ECAR), the level of 2-NBDG, which is an indicator of glucose uptake, and expression of Glut1 and other glycolysis-related genes were higher while their expression of gluconeogenesis genes were lower.However, their oxygen consumption rate (OCR) was similar (Figure 4E-H).Furthermore, the transcriptome analysis revealed significantly altered levels of cell death-related genes in ACC1-deficient iNKT cells (Figure 4C).These observations suggest that ACC1-deficient iNKT cells  are prone to dying and that this may correlate positively with glycolysis.Indeed, the ECAR and cell death in ACC1-deficient iNKT cells correlated positively (Figure 4I).This relationship was confirmed by treating the ACC1-deficient iNKT cells with 2-deoxy-D-glucose (2-DG), which inhibits glycolysis (Pajak et al., 2019): this decreased their cell death and expression of the pro-apoptotic genes while increasing their expression levels of anti-apoptotic genes.These effects were not observed in WT iNKT cells (Figure 4J and K).Thus, the high levels of glycolysis in ACC1-deficient iNKT cells promote their cell death.

ACC1-mediated metabolic programming promotes PPARγ expression and the subsequent survival of iNKT cells
To identify the target genes that regulate the metabolic reprogramming and cell death in ACC1deficient iNKT cells, we analyzed the transcription factors in the transcriptome data described above.This showed that sorted unstimulated ACC1-deficient iNKT cells expressed Pparg at significantly lower levels than WT iNKT cells (Figure 5A and B).This was also observed when the cells were stimulated with anti-CD3/CD28: the treatment elevated Pparg expression in both cell types but much less in the ACC1-deficient cells (Figure 5B).Thus, PPAR-γ may play a critical role in ACC1-mediated modification of iNKT-cell functions.This is consistent with the fact that PPAR-γ is important for activating genes involved in lipid biosynthesis and the maintenance of metabolic homeostasis (Ahmadian et al., 2013;Grygiel-Górniak, 2014).Indeed, when anti-CD3/CD28-stimulated ACC1-deficient iNKT cells were treated with the PPARγ agonist pioglitazone, their expression of Pparg was not only significantly restored, their expression of the gluconeogenesis genes Cebpa, Fbp1, and G6pc1 rose while their 2-NBDG uptake, expression of Glut1 and the glycolysis genes Hk2 and Pkm2, and cell death dropped (Figure 5B-D).
ACC1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which is then converted to the long-chain fatty acid palmitate (Moon et al., 2001).We found that treatment with palmitate had similar effects on CD3/CD28-stimulated ACC1-deficient iNKT cells as pioglitazone, namely, it increased Pparg and gluconeogenesis gene expression and downregulated glycolysis (Figure 5E).These effects were also observed when unstimulated ACC1-deficient iNKT cells were treated with palmitate: Pparg expression rose (Figure 5G) while glucose uptake and cell death dropped (Figure 5H).Thus, restoring the levels of palmitate, the downstream product of ACC1 activity, restored PPARγ expression, which in turn downregulated glycolysis and thereby protected the cells from cell death.
PPARγ activity can be regulated by a variety of ligands, including fatty acids, whose transport to the nucleus is actively facilitated by fatty acid-binding proteins (FABPs) (Wolfrum et al., 2001;Patil et al., 2019;Hou et al., 2022).The unstimulated ACC1-deficient iNKT cells showed depressed expression of the genes encoding FABP1, FABP3, and FABP5 (Figure 5F).Thus, ACC1 deficiency downregulated the expression of these genes.We then asked whether circumventing the ACC1 deficiency by treating the unstimulated cells with palmitate could improve the expression of these FABPs, as exogenous treatment of palmitate has been shown to induce FABPs in macrophages: indeed, Fabp1, Fabp3, and especially Fabp5 expression were upregulated in iNKT cells as well (Figure 5F).
We then determined whether the FABPs mediate the proglycolytic and pro-apoptotic effects of ACC1 (and palmitate) deficiency in iNKT cells by culturing unstimulated palmitate-treated ACC1deficient iNKT cells with a FABP inhibitor, FABP-IN-1, which is known to inhibit FABP 3, 5, and 7. Indeed, the inhibitor blocked the ability of palmitate to restore PPARγ expression (Figure 5G) and suppress glucose uptake and cell death (Figure 5H).These findings were also observed when CD3/ CD28-stimulated ACC1-deficient iNKT cells were treated with palmitate with and without FABP inhibitor: the FABP inhibitor reversed the ability of palmitate to increase Pparg and gluconeogenesis gene expression and downregulate glycolysis (Figure 5E).and fatty-acid synthesis metabolites.(E) Seahorse extracellular flux analysis of extracellular acidification rate (ECAR) and oxygen consumption rate (OCR).(F) Expression of glycolysis-related (Hk2, Pkm2) and gluconeogenesis-related (Fbp1, G6pase) genes.(G) 2-NBDG uptake.(H) GLUT1 expression.(I) Correlation between iNKT-cell death and maximal glycolytic activity.(J, K) The iNKT cells were treated with 2-DG to inhibit glycolysis.The effect of 2-DG on cell death (J) and intrinsic cell death-related gene expression (K) was then determined.In (A-D), the iNKT cells were from 8 mice/group.The data in (D) are presented as mean ± SEM.The data in (E-K) are pooled data from five independent experiments (n = 5/group) and are presented as mean ± SEM. ns, not significant.*p<0.05,**p<0.01,***p<0.001,as determined by unpaired two-tailed t-tests.Since FABP-inhibitor treatment did not affect the PPARγ expression, glucose uptake, and cell death in WT iNKT cells (Figure 5E, G, and H), it seems that the ACC1 deficiency in iNKT cells mediated their metabolic reprogramming by abolishing palmitate production: this downregulated their FABP expression, which in turn suppressed PPARγ expression, which increased glycolysis and thereby promoted cell death (Figure 5I).
On a side note, the WT and ACC1-deficient iNKT cells did not differ in terms of the methylation of the promoter site of PPARγ (Figure 5-figure supplement 1A), and treatment of the unstimulated cells with histone deacetylase (HDAC) inhibitor did not alter their cell-death rates or expression of Pparg, Hk2, Bcl2, or Bak (Figure 5-figure supplement 1B, C).Thus, the regulation of PPARγ expression in ACC1-deficient iNKT cells may not involve epigenetic changes such as methylation and acetylation.

The ACC1-PPAR-γ axis in iNKT cells contributes to AHR and airway inflammation in allergic asthma
To confirm that ACC1-mediated metabolic programming in iNKT cells regulates the development of AHR, we pretreated WT or ACC1-deficient iNKT cells with palmitate or pioglitazone, adoptively transferred them into Jα18 KO mice, and then subjected the mice to OVA-induced asthma (Figure 6) or HDM-induced asthma (Fig. S4).As shown above (Figure 3), transfer of untreated WT iNKT cells was able restore AHR, airway inflammation scores, and high lymphocyte, neutrophil, eosinophil, and macrophage frequencies in the lungs and BALF.It also generated a CD4 + T cell population in the lungs that expressed high levels of Gata3, Il4, Il5, and Il13 and low levels of Tbx21, Rorc, Foxp3, Ifng, Il17a, and Il10.Moreover, the sorted iNKT cells in the lungs expressed high levels of Il4 and Il13 but low levels of Ifng and Il17a.By contrast, transfer of the untreated ACC1-deficient iNKT cells did not achieve any of these pathological changes or lung CD4 + T cell or iNKT cell gene-expression profiles.However, when the ACC1-deficient iNKT cells were pretreated with palmitate or pioglitazone, all pathological and gene-expression changes were restored (Figure 6A As shown above (Figure 3I), the transfer of untreated WT iNKT cells into mice that were then subjected to OVA-induced asthma led to a moderate iNKT cell population in the lungs that showed low apoptosis.By contrast, the transfer of untreated ACC1-deficient iNKT cells led to low lung iNKT cell numbers that frequently took up PI.However, pretreatment of the ACC1-deficient iNKT cells with palmitate or pioglitazone increased lung iNKT cell numbers and reduced their apoptosis (Figure 6H  and I).This is consistent with our in vitro experiments with the unstimulated and anti-CD3/CD28stimulated iNKT cells above (Figure 5).Notably, the sorted iNKT cell population in the lungs of Jα18 KO mice that received untreated ACC1-deficient iNKT cells also demonstrated less PPARγ expression and more glucose uptake and Glut1 expression compared to when untreated WT iNKT cells were transferred, and this was reversed when the ACC1-deficient iNKT cells were pretreated with palmitate or pioglitazone (Figure 6J).Thus, treatment with palmitate or pioglitazone increased the survival of adoptively transferred ACC1-deficient iNKT cells in Jα18 KO mice, which restored their ability to induce AHR in allergic asthma.Meanwhile, chemokine receptor signaling is also implicated in regulating homeostasis of iNKT cell in the periphery.In particular, Meyer et al. suggested that iNKT cells require CCR4 to localize to the airways and to induce AHR (Meyer et al., 2007).Thus, we examined the expression of several chemokine receptors, including CCR4.We found that WT and ACC1-deficient iNKT cells did not differ in their chemokine receptor expressions, suggesting that the chemokine signaling may not be critical for ACC1-mediated regulation in AHR.
The online version of this article includes the following figure supplement(s) for figure 5:   Altogether, these results show that ACC1-mediated metabolic programming in iNKT cells maintains their PPARγ expression, which downregulates their glycolysis and thereby increases their survival.This allows these cells to promote AHR and airway inflammation in allergic asthma models.

The ACC1-PPARγ axis in iNKT cells may also contribute to allergic asthma in humans
We next asked whether patients with allergic asthma demonstrate altered expression of fatty-acid synthesis-related metabolic enzymes in iNKT cells compared to healthy volunteers.Thus, we sorted the iNKT, Treg, CD4 +T, and CD8 + T cells from the peripheral blood mononuclear cells (PBMCs)of 10 healthy volunteers, 10 patients with allergic asthma, and 10 patients with nonallergic asthma and examined their mRNA expression of ACC1 and PPARG.We also examined the expression of FASN because it, like ACC1, is a key de novo fatty-acid synthesis enzyme and our experiment with CD3/ CD28-stimulated murine iNKT cells and conventional CD4 + and CD8 + T cells showed that the iNKT cells expressed much higher levels of Fasn as well as Acc1 than the other cells (Figure 1C).Indeed, circulating iNKT cells from allergic asthma patients expressed significantly higher levels of ACC1, FASN, and PPARG than iNKT cells from healthy controls and nonallergic asthma patients (Figure 6figure supplement 2A).Similarly, the iNKT cells from the allergic asthma patients expressed significantly higher FBP1 levels than the control iNKT cells, although this difference was not observed for HK2 (Figure 6-figure supplement 2B).Lastly, the expression levels of IL4 and IL13 were significantly higher in iNKT cells from the allergic asthma patients compared to those from healthy controls and nonallergic asthma patients (Figure 6-figure supplement 2C).These changes in ACC1, FASN, PPARG, and FBP1 expression were much more pronounced in the iNKT cells from allergic asthma patients than in the CD4 + T cells, CD8 + T cells, and Tregs from the same patients (Figure 6-figure supplement 2).Thus, iNKT cells from allergic asthma patients express higher ACC1, FASN and PPARG levels and lower levels of a glycolysis, which is accompanied with higher levels of IL4 and IL13 than iNKT cells from healthy controls and nonallergic asthma patients.These findings suggest that the ACC1-PPAR-γ axis in iNKT cells may also be involved in human allergic asthma.

Discussion
This study showed that Cd4-Cre::Acc1 fl/fl mice exhibited attenuated AHR and airway inflammation in OVA-and HDM-induced asthma models due to the enhanced apoptosis and loss of Gata3, Il4, and Il13 expression in lung iNKT cells.The mechanism appeared to partly involve the low production in iNKT cells of the ACC1-downstream long-chain fatty acid palmitate, which impaired FABP expression; this reduced PPARγ expression and enhanced glycolysis in the iNKT cells, which promoted their apoptosis.Moreover, the Cd4-CreAcc1 fl/fl mice displayed significant defects in the thymic development and peripheral homeostasis of iNKT cells in a cell-intrinsic manner; thus, homeostatic dysregulation of iNKT cells may also contribute to the attenuation of AHR in Cd4-Cre::Acc1 fl/fl mice.
The negative effect of ACC1 deficiency on the asthmogenic iNKT-cell functions is consistent with several studies that suggest that ACC1-mediated de novo fatty-acid synthesis can also shape the behavior of other T cells, including Th17 cell and Treg differentiation, IL-5 production by Th2 cells in the lungs, the generation of memory CD4 + T cells, and CD8 + T cell proliferation.Like us, these studies also show that blocking ACC1 function can improve various diseases in mouse models (Berod et al., 2014;Nakajima et al., 2021;Endo et al., 2019;Goto et al., 2014).In this regard, Tregs may also   play a major role in asthma.However, the expression level of Foxp3 was comparable between WT and ACC1-deficient Tregs.The level of Foxp3 to some extent serves as a critical determinant of suppressive function of Tregs (Fontenot et al., 2003;Wing et al., 2019).Thus, we speculate that they might not critically contribute to the development of asthma, although we cannot completely rule out the contribution of Tregs to our studies.
It should be noted that Cd4-Cre::Acc1 fl/fl mice lack ACC1 expression in both conventional CD4 + T cells and iNKT cells.While the use of iNKT cell-specific Cre system would demonstrate critical role of ACC1 in iNKT cells regarding allergic asthma, there is no iNKT cell-specific Cre system available yet.In addition, the study conducted by Nakajima et al., which reported that the absence of ACC1 in CD4 + T cells resulted in reduced numbers and functional impairment of memory CD4 + T cells, leading to less airway inflammation further suggests the possibility of involvement of conventional CD4 + T cells in regulation of allergic asthma.
However, based on our experimental results, we believe that iNKT cells more contribute to the regulation of allergic asthma for the following reasons: (i) while the number of iNKT cells was significantly reduced in Cd4-Cre::Acc1 fl/fl mice, the number of conventional CD4 + T cells was only slightly reduced, (ii) Cd4-Cre::Acc1 fl/fl mice were dramatically decreased in their AHR in α-GalCer-induced allergic asthma model, and (iii) Jα18 KO mice that lack iNKT cells almost completely restore their AHR when adoptively transferred with WT iNKT cells but not ACC1-deficient iNKT cells.These results indicate that ACC1-mediated regulation of AHR is significantly dependent on iNKT cells, which might contribute to AHR in the study conducted by Nakajima et al. as well.From these, we believe that while ACC1 is a critical regulator of both conventional CD4 + T cells and iNKT cells in the regulation of allergic asthma, iNKT cells may contribute more to the regulation of allergic asthma compared to CD4 + T cells.
The possibility that ACC1 regulates survival of iNKT cells by programming their metabolism was first revealed by our transcriptome analysis of treatment-naïve iNKT cells: the ACC1-deficient iNKT cells exhibited downregulation of fatty-acid synthesis genes, as could be expected, but also upregulation of glycolysis pathway-related genes.This impaired the survival of the cells: compared to the WT iNKT cells, the ACC1-deficient iNKT cells were prone to apoptosis.This was observed in ACC1deficient iNKT cells regardless of whether they were treatment-naïve, stimulated by TCR ligation in vitro, or activated during OVA/HDM-mediated asthma.And the apoptotic tendency of these cells was completely reversed by treatment with glycolysis inhibitor in vitro.These findings are consistent with those of.Kumar et al., 2019, who reported that the production of lactate by iNKT cells when their glycolysis is upregulated promotes their cell death.
Furthermore, the apoptotic tendency of the ACC1-deficient iNKT cells was accompanied by their functional impairment.The ACC1-deficient iNKT cells exhibited impaired viability and functionality.Treatment of glycolysis inhibitor in ACC1-deficient iNKT cells not only restored cellular survival but also their functionalities.From these results, we speculate that ACC1-mediated regulation of both cellular homeostasis and cytokine production cooperatively contributed to the asthma phenotype.
Our transcriptome assays of naïve iNKT cells showed that of the multiple candidate transcription factors that were examined, only Pparg was upregulated in WT iNKT cells but not ACC1-deficient iNKT cells.This difference was augmented by TCR ligation.This suggested that downregulation of PPARγ could mediate the enhanced glycolysis and apoptosis in ACC1-deficient iNKT cells.This was supported by the fact that the PPARγ agonist pioglitazone largely restored gluconeogenesis and downregulated glycolysis and apoptosis in these cells.These findings are consistent with reports that PPARγ regulates the glycolytic pathway, although heterogeneous effects have been noted (Lehmann et al., 1995;Masters et al., 1987;Roberts et al., 2011;Panasyuk et al., 2012;Coman et al., 2016;Calvier et al., 2017).Our study also supports Fu et al., who observed that lipid biosynthesis is increased in iNKT cells after activation, and that this is mediated by PPARγ.Specifically, PPARγ acts synergistically with the transcription factor PLZF (which drives the acquisition of T-helper effector functions by innate and innate-like lymphocytes) to activate the Srebf1 transcription factor (Mao et al., 2016), which regulates lipid biosynthesis.This induces cholesterol synthesis, which is required for the optimal production of IFNγ by the iNKT cells.This PPARγ/PLZ-Srebf1-cholesterol pathway was found to contribute to anti-tumor immunity (Fu et al., 2020).Previous studies also reported that the PPARγ agonist ciglitazone promotes the TGFβ-dependent conversion of naïve effector T cells into Tregs, whereas PPARγ deficiency increases the infiltration of Th17 cells into the central nervous system in experimental autoimmune encephalomyelitis.(Wohlfert et al., 2007;Klotz et al., 2009).Thus, PPARγ can regulate the differentiation of naïve CD4 + T cells into both Th17 or Treg cells, which supports the role of PPARγ in iNKT-cell homeostasis and functions.However, further research is needed to determine the mechanisms by which PPARγ regulates the metabolic programming and biological changes in iNKT cells.
We also explored how PPARγ expression was downregulated in ACC1-deficient iNKT cells.Several studies have reported that PPARγ expression can be regulated by endogenous ligands such as FABPs, as well as by histone methylation and acetylation (Huang et al., 2018;Furuhashi and Hotamisligil, 2008), and that these changes can be regulated by the intracellular lipid levels (Veerkamp and van Moerkerk, 1993;Barak and Lee, 2010).Indeed, we observed that (i) ACC1-deficient iNKT cells demonstrated low FABP expression, (ii) exogenous fatty acid not only reversed the effects of ACC1 deficiency on glycolysis and apoptosis, it also restored the expression of both FABPs and PPARγ, and (iii) treating ACC1-deficient iNKT cells with exogenous palmitate or a PPARγ agonist and then transferring them into iNKT cell-deficient mice restored AHR in OVA-or HDM-induced asthma models.Thus, the reduced de novo fatty-acid synthesis in ACC1-deficient iNKT cells downregulated the expression of FABPs, which decreased the expression and activity of PPARγ, which in turn promoted glycolysis and apoptosis.This FABP-PPARγ axis was also observed in studies on hepatocytes and adipocytes, which reported that FABPs interact with PPARγ, thereby inducing its transactivation (Wolfrum et al., 2001;Tan et al., 2002).However, we did not observe that PPARγ promoter methylation was altered in the ACC1-deficient iNKT cells.Taken together, our findings indicate that the ACC1-FABP-PPARγ axis drives the proglycolytic metabolic reprogramming in ACC1deficient iNKT cells, thereby downregulating iNKT-cell homeostasis, and functions, including iNKT cell-mediated AHR in asthma models.
Finally, we showed that the ACC1-FABP-PPARγ axis in iNKT cells may also play pathogenic roles in human allergic asthma: iNKT cells in the blood of patients with allergic asthma expressed higher levels of IL4, IL13, ACC1, FASN, and PPARG and lower levels of a glycolytic gene than the iNKT cells of nonallergic asthma patients and healthy controls.Moreover, these genes were up/downregulated much more strongly in the iNKT cells from allergic asthma patients than in the other T-cell subsets from the same patients.Notably, the differences between allergic asthma patients and the control patients did not reflect lower frequencies of iNKT cells in the PBMCs from the allergic asthma patients (data not shown).This is consistent with speculation in the literature that iNKT cells participate in human asthma by altering their phenotype rather than their frequencies: for example, although asthma patients and controls do not differ in terms of iNKT-cell frequencies in the BALF, the asthma iNKT cells express more IL-4 (Akbari et al., 2006;Shim and Koh, 2014).Thus, the ACC1-FABP-PPARγ axis in iNKT cells may be activated and thereby contribute to human allergic asthma pathology.
In conclusion, derangement of the ACC1-FABP-PPAR-γ axis induces glycolysis-related impairment of cell viability in iNKT cells, which limits their ability to induce AHR and airway inflammation in murine asthma models.Therefore, de novo lipid synthesis in iNKT cells may play a critical regulatory role in the development of AHR.

Mice
Female C57BL/6 (B6) mice were obtained from the Orient Company (Seoul, Korea).Cd4-Cre mice were purchased from the Jackson Laboratory (stock no.017336; The Jackson Laboratory, Bar Harbor, ME).Acc1 fl/fl mice were originally generated and kindly provided by Dr. Salih J. Wakil of the Baylor College of Medicine (Houston, TX).To generate Cd4-Cre::Acc1 fl/fl mice, the Acc1 fl/fl mice were crossed with Cd4-Cre mice.The animals were bred and maintained under specific-pathogen-free conditions at the Biomedical Research Institute of Seoul National University Hospital (Seoul, Korea).All experiments were conducted on mice that were 8-10 weeks old.All animal experiments were approved by the Institutional Animal Care and Use Committee at Seoul National University Hospital (SNUH-IACUC).The animals were maintained in an AAALAC International (#001169)-accredited facility in accordance with the Guide for the Care and Use of Laboratory Animals 8th edition.

Isolation of PBMCs from healthy subjects and asthmatic patients
In total, 30 human PBMC samples were obtained from healthy control subjects and patients with nonallergic and allergic asthma.The PBMCs were obtained from 30 mL peripheral blood by using Ficoll-Paque (GE Healthcare, Uppsala, Sweden).The iNKT, CD4 + T, Foxp3 + Tregs, and CD8 + T cells in the PBMCs were sorted by FACSAria II (Becton Dickinson, San Jose, CA; purity <95%).All subjects provided informed written consent to participate in the study.The Institutional Review Board of Seoul National University Bundang Hospital approved the human studies (IRB #: B-1901/517-304).

Preparation and activation of murine T and iNKT cells
To determine the mRNA expression, transcriptome, metabolome, ECAR, and OCR of T and iNKT cells, the cells were obtained from mice as follows.CD4 + or CD8 + T cells from the thymi, spleens, lungs, and livers of Acc1 fl/fl and Cd4-Cre::Accl1 fl/fl mice were enriched by FACSAria II (Becton Dickinson).To obtain iNKT cells, the mononuclear cells of the livers of Acc1 fl/fl and Cd4-CreAccl1 fl/fl mice were isolated by Percoll gradient centrifugation.Thereafter, the iNKT cells were isolated by using APC-conjugated α-GalCer/CD1d tetramers-unloaded or loaded with PBS-57 from the tetramer facility of the National Institutes of Health (Bethesda, MD) followed by sorting using FACS (purity <95%).Alternatively, thymic and liver mononuclear cells were labeled with APC-conjugated ɑ-GalCer/CD1d tetramers, bound to anti-APC magnetic beads, and enriched on a MACS separator (Miltenyi Biotec, Auburn, CA; purity 89%).To analyze the development of thymic iNKTs cells, we re-stained enriched cells with CD1d tetramer and gated out CD3 and CD1d tetramer double-positive cells via flow cytometry to identify thymic iNKT cells, which were used for further analysis.For functional analysis, iNKT, CD4 + T, and CD8 + T cells were stimulated with plate coated anti-CD3 and CD28 antibodies overnight.
Adoptive transfer of iNKT cells in allergic asthma models iNKT cells were obtained from the lungs of at least 10 Acc1 fl/fl or Cd4-Cre::Acc1 fl/fl mice.Mouse lungs were finely chopped into small pieces using razor blades and were enzymatically digested using type IV collagenase.iNKT cells from the lungs were sorted via FACS using CD1d tetramers.Approximately, 6.0 × 10 5 of iNKT cells were obtained from at least 10 mice and were adoptively transferred into individual recipient mouse via the intratracheal route.

Flow-cytometric analysis
Single-cell suspensions were preincubated with mouse anti-Fc receptor antibodies (BD Biosciences, Franklin Lakes, NJ), stained with antibodies for 30 min at 4℃, washed twice with 1× PBS, and analyzed using a BD LSRII flow cytometer (BD Biosciences).For intracellular cytokine staining, cells were stained for surface markers, permeabilized, and then stained for intracellular proteins.Cells were permeabilized and fixed with Intracellular Fixation & Permeabilization Buffer (eBioscience, Waltham, MA), according to the manufacturer's protocols.Data were analyzed with FlowJo software (version 10; TreeStar, Ashland, OR).

Measurement of glucose uptake capacity using 2-NBDG assay
To assess the uptake of the fluorescent glucose analog 2-NBDG, cells were incubated for 30 min with 50 µM 2-NBDG (Cambridge Bioscience, Cambridge, UK)-supplemented glucose-free RPMI 1640 or RPMI containing 10% (v/v) FBS supplemented with 12.5 nM MitoTracker Deep Red (Thermo Fisher Scientific, Waltham, MA) for 30 min at 37℃, 5% (v/v) CO 2 .The cells were washed with 1× PBS, fixed with 0.5% (w/w) paraformaldehyde (PFA, Sigma), and then captured on a BD LSR Fortessa flow cytometer (BD Biosciences).After treating 2-NBDG, the fluorescence intensity of cells were measured using flow cytometry and represented the degree of glucose uptake in cells.

OVA-and HDM-induced asthma models
To induce the OVA asthma model, OVA antigen (Sigma) was dissolved in saline to a 1 mg/mL concentration.The mice were injected intraperitoneally with 4 mg aluminum hydroxide (Thermo Fisher Scientific) mixed with 100 µL OVA in saline (1 mg/mL solution) on days 0 and 7. On days 14, 15, 16, and 17, the isoflurane-anesthetized mice were challenged with 50 µg OVA (1 mg/mL solution) intranasally.Twenty-four hours after the last OVA instillation, the mice were sacrificed to measure the AHR.To induce the HDM asthma model, HDM (B82; Greer) was dissolved in saline to a final concentration of 1 mg/mL.Isoflurane-anesthetized mice were then treated intranasally on days 1-14 with 25 µg HDM solution and, 96 hr after the final intranasal instillation, the AHR and other inflammatory variables were measured.

In vivo intranasal inoculation of α-GalCer
Mice were inoculated intranasally with 200 ng of α-GalCer dissolved in 50 µL PBS and, 24 h after the last instillation, the mice were sacrificed to measure the AHR.

Measurement of AHR
AHR was measured by administering increasing doses of methacholine (0, 5, 10, 20, and 40 mg/ mL) using the forced oscillation technique (FlexiVent System; SCIREQ, Montreal, Quebec, Canada).A snapshot perturbation maneuver was imposed to measure the resistance of the entire respiratory system.

Preparation of single-cell suspensions from lungs and BALF and differential counting
Mouse lungs were diced into small pieces using razor blades and incubated for 1 hr in digestion medium (RPMI-1640 with 1 mg/mL collagenase type 4, Sigma) at 37°C.The lung cells were then filtered and treated with red blood cell lysis buffer.BALF cells were acquired by administering 1 mL PBS supplemented with 2% FBS three times using a tracheal cannula.Lavage fractions were pooled together for total and differential cell counts.Differential cell counts were conducted with cytospin preparations after Giemsa staining and were validated by flow cytometric analysis using a BD Fortessa (BD Biosciences).

Transcriptome analysis
iNKT cells from Acc1 fl/fl and Cd4-Cre::Acc1 fl/fl mice were sorted and total RNA was extracted using RNeasy with QIAshredders (QIAGEN, Germantown, MD).RNA quality and quantity were determined using an Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA) and Nanodrop (Nanodrop Technologies, Wilmington, DE).RNA-seq analyses were performed at the Theragen Bio Institute (Suwon, Korea).The data are available in NCBI database with accession number GSE205761.GSEA gene set enrichment assay (GSEA) was performed to identify significant expression differences under the two biological conditions and to identify the gene classes that were overexpressed or underexpressed in iNKT cells from Cd4-Cre::Acc1 fl/fl mice relative to those from WT mice.The transcriptome data were from sorted iNKT cells from eight mice/group that were pooled together.We also analyzed transcriptome data from our previous study to compare the iNKT cells to conventional CD4 + T cells (GSE103190) (Oh et al., 2011).These analyses were performed using GenePattern (https://genepattern.broadinstitute.org/).

Metabolome analysis
iNKT cells were sorted and pooled from eight WT mice, or eight Cd4-Cre::Accl1 fl/fl mice.The metabolites were extracted from each cell group as previously described (Faubert et al., 2013;Faubert et al., 2014), followed by MeOX and MTBSTFA derivatization.Metabolic profiling was performed by GC-MS/MS dynamic multiple reaction monitoring (dMRM) analyses using the Agilent 7890/7000 GC triple quadrupole mass spectrometer system.Gas chromatography was conducted using an Agilent J&W HP-5ms UI 15 m × 0.25 mm × 0.25 µm (P/N 19091S-431UI) capillary column.Helium was used as the carrier gas with a constant column flow rate of 1.5 mL min -1 .The initial oven temperature of 60°C was increased to 320°C at a rate of 10°C min -1 .The mass spectrometer was operated in the electron ionization mode at 70 eV.The analyses were performed in the dMRM mode.The area ratios of the analyte and the internal standard were used for the evaluation.The split/splitless injector temperature was set to 280°C.The samples were injected in the splitless mode with an autosampler Agilent 7683A injector.Agilent MassHunter Data Acquisition Software (ver.B.04.00) and MassHunter Workstation Software for Quantitative Analysis (QQQ) were used for data acquisition and the quantitative analysis, respectively.The results were normalized to the iNKT-cell numbers and/or total protein concentrations.

Quantitative RT-PCR
To analyze gene-expression levels in the metabolic pathways, immune cells were sorted and pooled from four-eight mice/group, and used in the analysis.Total RNA was isolated with TRIzol reagent (Thermo Fisher Scientific) according to the manufacturer's protocol.RNA was reverse-transcribed into cDNA using Maloney murine leukemia virus reverse transcriptase Taq polymerase (Promega, Madison, WI).For quantitative RT-PCR, gene-specific PCR products were quantified by an Applied Biosystems 7500 Sequence Detection System (Applied Biosystems, Foster City, CA).The list of primers used and their sequences is shown in Supplementary file 2. Gene-expression levels were normalized to those of Actb for mice and ACTB for humans.

Histology
Lung tissues were obtained from WT and Jɑ18 KO mice that did or did not undergo transfer of iNKT cells from Acc1 fl/fl and Cd4-Cre::Acc1 fl/fl mice during OVA-or HDM-induced asthma.The tissues were fixed in 10% formalin, embedded in paraffin, and sectioned, followed by staining with hematoxylin and eosin or periodic acid-Schiff (PAS).Lung inflammation and goblet cell hyperplasia were graded using a semi-quantitative scoring system as previously described ( Kujur et al., 2015;Myou et al., 2003).Briefly, inflammatory-cell numbers were graded as follows: 0, normal; 1, few cells; 2, a ring of inflammatory cells that was 1 cell-layer deep; 3, a ring of inflammatory cells that was 2-4 cell-layers deep; and 4, a ring of inflammatory cells that was >4 cell-layers deep.The goblet-cell numbers in the airway were graded as follows: 0, <0.5% PAS-positive cells; 1, <25%; 2, 25-50%; 3, 50-75%; and 4, >75%.Two fields were counted for each slide and mean score was calculated for each group.Two pulmonary pathologists reviewed and analyzed representative images.

ECAR and OCR assays
iNKT cells were sorted from eight mice/group and pooled together.ECAR and OCR assays were performed using a Seahorse Extracellular Flux Analyzer XF24e (Seahorse Bioscience Inc, Santa Clara, CA) according to the manufacturer's instructions.Briefly, the cells were seeded in a Seahorse plate and cultured overnight to 70-80% confluence.The culture medium was then replaced with cellular assay medium supplemented with 1 mM glutamine for the ECAR assay and 1 mM pyruvate, 2 mM glutamine, and 10 mM glucose for the OCR assay.The cells were incubated for 1 hr in a CO 2 -free incubator before measurement.The assays were performed according to the Seahorse protocols with final concentrations of 10 mM glucose, 2 μM oligomycin, and 50 mM 2-DG for ECAR, and 2 μM oligomycin, 1 μM carbonyl cyanide-4 (trifluoromethoxy) phenylhydrazone (FCCP), and 1 μM antimycin A for OCR.These assays were performed in at least three independent experiments on separate days.

Pyrosequencing assay
Genomic DNA was converted with bisulfite by using the EZ DNA Methylation Kit (Zymo Research, Irvine, CA) according to the manufacturer's protocol.PyroMark software was used to design the pyrosequencing primers.In brief, bisulfite-converted DNA was subjected to PCR amplification in a total volume of 25 µL.DNA methylation was assessed using a PyroMark Q48 Autoprep system (QIAGEN) and PyroMark Q48 Advanced CpG Reagents (QIAGEN).The nucleotide dispensation order was generated by entering the sequences into the PyroMark Q48 Autoprep software ver.2.4.2 (QIAGEN).The methylation at each CpG site was determined using the PyroMark Q48 Autoprep software set in CpG mode.The mean methylation of all CpG sites within the target region was determined by using the methylation at the individual CpG sites.

Materials availability statement
RNA-sequencing of iNKT cells from Acc1 fl/fl and Cd4-Cre::Acc1 fl/fl mice are available in NCBI database with accession number GSE205761.Transcriptome data from our previous study comparing iNKT cells to conventional CD4 + T cells are available in NCBI dataset with accession number GSE103190.

Statistical analyses
GraphPad Prism 7 (GraphPad Software, La Jolla, CA) was used for the statistical analyses and graphical display of the data.Unpaired two-tailed t-tests or Mann-Whitney U test were performed to compare the groups.p-values <0.05 were considered statistically significant.
Review Board of Seoul National University Bundang Hospital approved the human studies (IRB #: B-1901/517-304).All animal experiments were approved by the Institutional Animal Care and Use Committee at Seoul National University Hospital (SNUH-IACUC).The animals were maintained in an AAALAC International (#001169)-accredited facility in accordance with the Guide for the Care and Use of Laboratory Animals 8th edition.

Additional files
Supplementary files • Supplementary file 1. List of reagents used for flow cytometry.
• Supplementary file 2. List of primer sequences used for real-time PCR.

Data availability
Sequencing data have been deposited in GEO under accession codes GSE205761.
The following dataset was generated:

Figure 1 .
Figure 1.The fatty-acid synthesis pathway is upregulated in invariant natural-killer T (iNKT) cells during murine allergic asthma.(A, B) WT mice were subjected to ovalbumin (OVA)-induced asthma.(A) Schematic depiction of the OVA-induced allergic asthma model (left).The airway resistance of naïve, OVA-sensitized, and OVA-sensitized and OVA-challenged WT mice (right).(B) Gene expression of enzymes related to glycolysis, the tricarboxylic acid (TCA) cycle, β-oxidation, and fatty-acid synthesis in lung iNKT cells that were sorted on d0, d7, and d17.The data shown in (A) and (B) are pooled data from four independent experiments (n = 8/group).(C) In vitro gene expression of enzymes related to glycolysis (Hk2 and Pkm2), the TCA cycle (Sdh2b Figure 1 continued on next page

Figure 2 .
Figure 2. ACC1 deficiency in murine invariant natural-killer T (iNKT) cells associates with failure to develop α-GalCer-induced AHR.Cd4-Cre::Acc1 fl/fl and Acc1 fl/fl mice were administered α-GalCer intranasally.(A) Airway resistance.(B) Total immune cell numbers in the lungs and bronchoalveolar lavage fluid (BALF).(C, D) Numbers of immune-cell subsets in the BALF (C) and lungs (D).(E, F) Expression levels of transcription factors (E) and cytokines (F) in the conventional CD4 + T cell population that was sorted from the lungs.(G) Numbers and survival status of iNKT cells sorted from the lungs.(H) Cytokine expression in iNKT cells sorted from the lungs.All data are pooled from five independent experiments (n = 10/group) and presented as mean ± SEM. ns, not significant.*p<0.05,**p<0.01,***p<0.001,as determined by unpaired two-tailed t-tests.

Figure 3 .
Figure 3. Adoptive transfer of WT, but not ACC1-deficient, invariant natural-killer T (iNKT) cells restores the ability of NKT-knockout mice to develop ovalbumin (OVA)-induced asthma.iNKT cells sorted from naïve Cd4-Cre::Acc1 fl/fl and Acc1 fl/fl mice were adoptively transferred into naïve WT and Jα18 KO mice, after which OVA-induced asthma was initiated.(A) Airway resistance.(B) Total inflammatory cell numbers in the lungs and bronchoalveolar lavage fluid (BALF).(C, D) Numbers of immune-cell subsets in BALF (C) and lungs (D).(E, F) Expression levels of transcription factors (E) and cytokines (F) in CD4 + T cells sorted from the lungs.(G) Cytokine expression in iNKT cells sorted from the lungs.(H, I) Numbers (H) and survival status (I) of iNKT cells from the lungs.(J) Representative histological lung section images and histological scores.Scale bar = 200 µM.The data in (A-J) are pooled data from four independent experiments (n = 8/group).All data are presented as mean ± SEM. ns, not significant.*p<0.05,**p<0.01,***p<0.001,as determined by unpaired two-tailed t-tests.The online version of this article includes the following figure supplement(s) for figure 3: Figure supplement 1. Deficiency of ACC1 in invariant natural-killer T (iNKT) cells perturbed their thymic development and peripheral homeostasis in cell intrinsic manner.

Figure 4 .
Figure 4.The high glycolytic capacity of ACC1-deficient invariant natural-killer T (iNKT) cells associates with their enhanced cell death.iNKT cells were sorted from the liver of naïve Cd4-Cre::Acc1 fl/fl and Acc1 fl/fl mice and used directly in the experiments.The two iNKT cell preparations were compared.(A) Volcano plot of the gene expression.(B) Signature gene expression, as determined by gene set enrichment analysis (GSEA).(C) Heat map of the fatty-acid synthesis, glycolysis, cell death, and cytokine genes.(D) Metabolome data map of the glycolysis, tricarboxylic acid (TCA) cycle, Figure 4 continued on next page

Figure supplement 1 .
Figure supplement 1. ACC1 deficiency does not affect epigenetic modification of Pparg in invariant natural-killer T (iNKT) cells.

Figure 6
Figure 6 continued on next page

Figure supplement 2 .
Figure supplement 2. Genes for fatty acid metabolism are highly expressed in invariant natural-killer T (iNKT) cells from peripheral blood mononuclear cells (PBMCs) of patients with allergic asthma.