Tau and spectraplakins promote synapse formation and maintenance through Jun kinase and neuronal trafficking

The mechanisms regulating synapse numbers during development and ageing are essential for normal brain function and closely linked to brain disorders including dementias. Using Drosophila, we demonstrate roles of the microtubule-associated protein Tau in regulating synapse numbers, thus unravelling an important cellular requirement of normal Tau. In this context, we find that Tau displays a strong functional overlap with microtubule-binding spectraplakins, establishing new links between two different neurodegenerative factors. Tau and the spectraplakin Short Stop act upstream of a three-step regulatory cascade ensuring adequate delivery of synaptic proteins. This cascade involves microtubule stability as the initial trigger, JNK signalling as the central mediator, and kinesin-3 mediated axonal transport as the key effector. This cascade acts during development (synapse formation) and ageing (synapse maintenance) alike. Therefore, our findings suggest novel explanations for intellectual disability in Tau deficient individuals, as well as early synapse loss in dementias including Alzheimer’s disease. DOI: http://dx.doi.org/10.7554/eLife.14694.001


Introduction
The correct formation and subsequent maintenance of synapses is a key prerequisite for brain development, function and longevity. Precocious loss of synapses is observed in late onset neurodegenerative diseases including Alzheimer's disease (AD) and Frontotemporal Dementia (FTD), likely contributing to the cognitive decline and neuronal decay observed in patients (Pooler et al., 2014;Saxena and Caroni, 2007;Serrano-Pozo et al., 2011). Therefore, the characterisation of mechanisms maintaining synapses during ageing would have major implications for our understanding of dementias.
The development of synapses and their maintenance during ageing is dependent on sustained transport of synaptic proteins from the distant soma, driven by motor proteins which trail along the bundles of microtubules in axons and dendrites (Goldstein et al., 2008). Microtubules are regulated by microtubule binding proteins which are therefore in a key position to regulate synapse formation and maintenance (Prokop, 2013).
Tau is a microtubule associated protein (MAP) discovered in the mid-seventies (Weingarten et al., 1975). Reduction in Tau levels has been linked to intellectual disability (Sapir et al., 2012) and a class of brain disorders termed 'dementias which lack distinctive histopathology' (DLDH) (Zhukareva et al., 2001). Tau detachment from MTs is linked to prominent neurodegenerative diseases such as Alzheimer's disease, Frontotemporal Dementia and some forms of Parkinson's disease (Kovacs, 2015). In vitro, Tau has the ability to regulate microtubule properties including stability, cross-linkage and polymerisation (Morris et al., 2013). Through such functions, Tau would be expected to regulate multiple aspects of neuronal cell biology, but its physiological roles are still not understood and highly debated (Morris et al., 2013). This might partly be due to experimental challenges posed by functional redundancy, where other MAPs are proposed to mask physiological roles of Tau (Ma et al., 2014;Takei et al., 2000).
A good model in which to deal with functional redundancy is the fruit fly Drosophila melanogaster. As is ideal for studies of Tau, Drosophila neurons provide access to powerful genetics, they are readily established for research on the neuronal cytoskeleton (Sánchez-Soriano et al., 2010), on neuronal transport (Schwarz, 2013) and on synapses (Prokop and Meinertzhagen, 2006). Importantly, concepts and mechanisms gained from work in flies are often well conserved in higher organisms (Bellen et al., 2010;Jaiswal et al., 2012).
Work in Drosophila suggested that the spectraplakin Short Stop (Shot), a large actin-MT linker molecules and potent regulators of microtubules, could display potential functional overlap with Tau during microtubule stabilisation (Alves-Silva et al., 2012;Prokop, 2013). This hypothesis is attractive because the well-conserved mammalian spectraplakin Dystonin is already linked to a neurodegenerative disease (type VI hereditary sensory autonomic neuropathy; OMIM #614653;) (Ferrier et al., 2013), and its paralogue ACF7/MACF1 plays important roles during brain development (Goryunov et al., 2010;Ka and Kim, 2015). Since ACF7 continues to be expressed in the brain, it is tempting to speculate that it might be required for neuronal maintenance (Bernier et al., 2000).
Here we use Drosophila neurons, in culture and in vivo alike, to demonstrate novel roles of Tau in regulating the formation and maintenance of synapses during ageing, by coordinating the intracellular trafficking of synaptic proteins. Thus, we show that the role of Tau in synapse regulation occurs in functional overlap with Shot. The robust shot-tau double-mutant phenotypes enabled us to study the mechanistic cascade composed of three steps: microtubule stability as the trigger, the JNK signalling pathway as the mediator and kinesin-3 mediated axonal transport of synaptic proteins as the key effector. We propose a new mechanism based on the loss of Tau function which could explain intellectual disability in MAPT (the human tau gene) mutant individuals and precocious synapse loss in tau-related neurodegeneration (Saxena and Caroni, 2007;Serrano-Pozo et al., 2011). eLife digest Nerve cells form cable-like projections called axons that connect to other nerve cells to form the nervous system. Axons carry nerve impulses in the form of electrical messages, and they pass on these messages to other cells at junctions known as synapses. Specific patterns of connections between axons allow us to coordinate our movements, feel emotions and think. In Alzheimer's disease and other neurodegenerative conditions, synapses often decay earlier than they should, which can cause important connections between nerve cells to be lost.
To be able to make and maintain synapses, nerve cells transport materials from the main body of the cell along axons to the sites where synapses form. A protein called Tau and a family of proteins called the spectraplakins are linked to neurodegenerative diseases. Changes (or mutations) in these proteins were known to disrupt the formation and maintenance of synapses, but it was not clear how these proteins work in this context. Voelzmann et al. studied Tau and spectraplakin during synapse formation and maintenance in fruit flies. The experiments show that both proteins stabilise tube-like structures called microtubules in axons, which provide structural support to cells. The loss of Tau or spectraplakins causes the microtubules to fall apart and triggers an internal stress signalling pathway known as the JNK pathway. Activating JNK signalling blocks the transport of synaptic materials along axons, which prevents the formation of new synapses and starves existing synapses leading to their decay. The next step is to find out whether Tau and spectraplakins play similar roles in the nerve cells of mammals, which may open up new opportunities to develop therapies for Alzheimer's and other neurodegenerative diseases. obtained from embryos that were wildtype (wt), tau -/-, and tau -/with elav-Gal4 driven expression of UAS-tau-GFP; neurons were stained for tubulin (Tub, red) and the synaptic protein Synaptotagmin (Syt, light blue). (B) Quantification of the experiment shown in A, shown as the number of Syt puncta per neuron, normalised to wildtype (the assessed numbers of neurons are indicated in each bar, ***P MW <0.001, **P MW <0.01). (C) Primary Drosophila neurons at 2DIV, obtained from embryos that were wildtype (wt), tau MR22 (tau -/-), shot 3 (shot -/-), and shot 3 tau MR22 (shot -/tau -/-), co-stained with antibodies against HRP (magenta) and the synaptic proteins (green) Syt and Bruchpilot (Brp); areas emboxed with dashed lines are displayed as magnified insets showing the synaptic staining only. (D) Quantification of the experiments in C, displayed as number (no.) of Syt and Brp puncta per neuron, normalised to wildtype (the assessed numbers of neurons are indicated in each bar, ***P MW <0.001; **P MW <0.01; *P MW <0.05,). Scale bar: 10 mm. A statistics summary of the data shown here is available in Figure 1-source data 1. Figure 1 continued on next page

Tau is required for the formation of synapses
To study synaptic roles of Drosophila Tau, we first used primary Drosophila neurons generated from tau mutant embryos. Primary fly neurons are genetically and experimentally highly amenable and provide robust cellular and subcellular readouts . These cultures are also particularly suited for the study of embryonic lethal mutations since they allow the examination of neurons beyond the embryonic lethal stage. Already 8 hr in vitro (HIV), these neurons show transport of synaptic material in the growing axon (Sánchez-Soriano et al., 2010) and after 2 days in vitro (DIV), they display functional presynaptic sites (Küppers-Munther et al., 2004;Küppers et al., 2003) that can be reliably stained with antibodies against presynaptic proteins (Figure 1-figure supplement 1). They contain dense bars and synaptic vesicle accumulations which undergo excitation-dependent uptake and release (Küppers-Munther et al., 2004;Küppers et al., 2003).
The Df(3R)tauMR22 mutation (tau MR22 ) is an embryonic lethal chromosome deletion that uncovers most of the Drosophila tau gene and is a true null allele (Bolkan and Kretzschmar, 2014;Doerflinger et al., 2003). We found that tau MR22 mutant primary neurons at 2 DIV show a decrease in the number of puncta positive for Bruchpilot (Brp) and Synaptotagmin (Syt) (Bruchpilot/Brp: 42%; Synaptotagmin/Syt: 59%; all compared to wildtype control neurons; Figure 1). Our finding suggest that tau-deficient primary neurons contain fewer Brp and Syt positive presynaptic specialisations. In the following, we will refer to this phenotype as synapse reduction.
To confirm that this reduction in synapse numbers was due to the loss of Tau, we performed rescue experiments using Gal4-induced neuronal expression of UAS-tau-GFP (Doerflinger et al., 2003) in tau MR22 mutant neurons. We found a significant improvement of the tau MR22 mutant phenotype ( Figure 1A-B). We concluded that absence of Tau causes a reduction in presynaptic sites.

Tau displays functional overlap with the spectraplakin Shot
To assess potential functional overlap of Tau with the Drosophila spectraplakin Shot, we first analysed shot 3 mutant primary neurons at 2 DIV. We found a reduction in synapse numbers (Brp: 62%; Syt: 67%; Figure 1C-D), consistent with previous descriptions in vivo (Lö hr et al., 2002;Prokop et al., 1998). We confirmed that this reduction in synapse numbers was due to the loss of Shot by using Gal4-induced neuronal expression of UAS-shot-GFP (Alves-Silva et al., 2012;Sanchez-Soriano et al., 2009) which significantly rescued the synapse phenotype in shot 3 mutant neurons ( Figure 1-figure supplement 2), confirming the involvement of Shot.
We then assessed potential functional overlap of Shot and Tau. First, we analysed primary neurons double-mutant for the shot 3 and tau MR22 null alleles (shot-tau) which showed even lower synapse numbers (Brp: 22%; Syt: 39%; Figure 1C-D) than either of the single mutant neurons. Notably, these analyses were performed on clearly polarised neurons with well developed axons to exclude indirect effects caused by defective axon growth (Figure 3-figure supplement 3). Despite that, we found that the double-mutant neurons displayed reduced branch numbers (Figure 3-figure supplement 3F). However, we could demonstrate that the lower number in branches is not the cause for synapse reduction by using knock-down experiments as well as rescue experiments (explained in   (Landgraf et al., 2003) in stage 16 embryos that were wildtype (wt), tau MR22 (tau -/-), shot 3 (shot -/-), and shot 3 tau MR22 (shot -/tau -/-), stained with antibodies against Syt (green) and the motorneuron-specific cell membrane protein Fasciclin II (FasII, magenta). Arrowheads depict the distal end of the motoraxons where the nascent NMJs are forming; boxed areas are displayed as enlarged insets showing anti-Syt staining only. Note that cell bodies of sensory neurons contain visible levels of Syt in the mutant (white arrows) but not in wildtype neurons (open arrow). (B) Quantification of the experiments in A, shown as the average intensity of Syt at the nerve ending normalised to wildtype (the sample number of NMJs is indicated in each bar, ***P MW <0.001; **P MW <0.01; *P MW <0.05; ns, not significant P MW >0.05). Scale bars: 10 mm. A statistics summary of the data shown here is available in Figure 2-source data 1. In further support of functional overlap, also our genetic interaction studies revealed a synapse reduction phenotype in shot 3/+ tau MR22/+ double heterozygous mutant neurons (see later in Figure  5A). Finally, we performed cross-rescue experiments by expressing a shot transgene in tau MR22 mutant neurons and a tau transgene in shot 3 mutant neurons. In both cases, Syt staining revealed a rescue of the synapse reduction phenotype (Figure 1-figure supplement 2). Taken together, our results indicate that Shot and Tau functionally overlap, rather than act hierarchically in the same pathway.
Next, we investigated synaptic phenotypes in vivo. Since shot 3 and tau MR22 animals are late embryonic lethal, we analysed them at late embryonic stage 16, when Syt is already confined to nascent synaptic terminals, as can be reliably imaged at neuromuscular junctions (NMJs; Figure 2 and Figure 2-figure supplement 1 for a schematic drawing of the embryonic NMJ) (Littleton et al., 1993). In shot-tau mutant embryos, Syt levels at NMJs were reduced to 48%, whereas shot mutant embryos showed a milder reduction to 71%, and tau mutant embryos no detectable effect ( Figure 2). Taken together, our data suggest that Tau is required for the formation of synapses in culture and in vivo and that Tau and Shot functionally overlap in this context.

Synapse maintenance in the ageing brain requires Tau and Shot
Tau and Shot remain highly expressed in mature neurons (see later in Figure 6), and we tested whether they are required also for synapse maintenance. For this, we used the GAL4-UAS system to co-express previously used and validated UAS-RNAi constructs for both genes in the same neurons (Bolkan and Kretzschmar, 2014;Subramanian et al., 2003). This strategy takes out Tau and Shot functions with some delay, due to the late onset of GAL4 expression and the persistence of Tau and Shot proteins (Figure 3-figure supplement 1).
We first used this approach in cultured primary neurons, where combined knock-down of tau and shot caused no reduction in the number of Syt-labelled presynaptic sites at 3 and 18 DIV as compared to wildtype controls ( Figure 3A To assess roles in synapse maintenance also in vivo in the ageing brain, we used atonal-Gal4 (ato-Gal4) to drive gene expression in dorsal cluster (DC) neurons of the adult brain (Zschätzsch et al., 2014) (illustrated in Figure 3-figure supplement 2). In these experiments, we expressed GFPtagged Synaptotagmin (Syt-GFP) to label synapses, either alone or together with shot RNAi and/or tau RNAi . We compared young flies at 2-5 days after eclosion with old flies at 24-29 days at 29oC. We found that the number of Syt-GFP labelled synapses in DC neurons decreased to 34% in aged specimens expressing both shot RNAi and tau RNAi when normalised to young flies of the same genotype ( Figure 3C-D). This age-dependent decrease in synapse numbers did not occur in control flies ( Figure 3C-D), and single knock-down of either shot or tau only showed a non-significant tendency to lose synapses over time ( Figure 3D). Notably, aged double knock-down DC neurons had no reduction in the number of axonal branches (as assessed with the myr-tdTomato membrane marker; Figure 3E-F), indicating that also in vivo precocious synapse decay was not due to axonal loss. From our studies in culture, in embryos and in the adult brain, we conclude that Tau and Shot are required for synapse development during early stages, and for synapse maintenance in ageing neurons, where their combined deficiency causes precocious synapse loss.

Tau and Shot control intracellular trafficking of synaptic proteins
Synapse formation and maintenance require that synaptic proteins synthesised in the soma are actively transported through the axon towards the distant presynaptic sites. In Drosophila primary neurons, transport of endogenous synaptic proteins already starts at 8 hr in vitro (HIV) when synaptic proteins appear as dotted patterns along axons and in growth cones (Sánchez-Soriano et al., 2010) ( Figure 4A-B). This is similar in rat hippocampal neurons (Bonanomi et al., 2005). Already at this early stage, shot-tau double mutant neurons display a strong decrease in synaptic proteins in growth cones and axons ( Figure 4A-B), indicating potential intracellular transport defects.
To study intracellular transport, we analysed the dynamics of Syt-GFP using live imaging of neurons at 8 HIV. In shot-tau mutant neurons, the percentages of anterograde and retrograde displacements and retrograde velocities of Syt-GFP containing vesicles were not affected and anterograde velocities were only slightly increased. In contrast, the number of Syt vesicles within the axon showed a sharp decrease to~40% in shot-tau mutant neurons when compared to controls ( Figure 4C). Notably, this decrease in axonal vesicles is accompanied by an increase in the number of somatic Syt-GFP puncta to~159% ( Figure 4C). Similarly, endogenous Syt was increased in somata of shot-tau mutant neurons, both in culture and in in vivo ( Figure 4D-E).
These phenotypes in shot-tau mutant neurons suggested aberrant intracellular trafficking of Sytcontaining vesicles, potentially due to a road block in the soma. neuronal driver elav-Gal4 (tau RNAi shot RNAi ). Neurons are stained with anti-tubulin and anti-Syt; at 26 DIV, tau RNAi shot RNAi neurons display a reduction in the number of Syt puncta when compared to wildtype. (B) Quantification of the experiments in A, shown as the number of Syt puncta per neuron at 3 DIV, 18 DIV and 26 DIV, normalised to wildtype controls (the number of assessed neurons is indicated in each bar; ***P MW <0.001; ns, not significant P MW >0.05). (C) A region of Drosophila adult brains including the medulla (delimited by dashed lines) where Syt-GFP is expressed in dorsal cluster neurons using atonal-Gal4, in the absence (control) or together with tau RNAi and shot RNAi (tau RNAi shot RNAi ). Brains are stained with anti-GFP at 2-5 days (young) and 24-29 days (old) after eclosion. Note that GFP-labelled synapses (arrowheads) are decreased in old brains upon shot and tau knock-down. (D) Quantification of the experiments in C, showing the normalised number of Syt-GFP-labelled puncta in old specimen per mean number of puncta in young specimens for the following phenotypes: ato-Gal4 UAS-syt-GFP alone (control), co-expressing UAS-tauRNAi (tau RNAi ), UAS-shot RNAi (shot RNAi ), or both knock-down constructs (tau RNAi shot RNAi ; the number of analysed brains is indicated in each bar, ***P MW <0.001; ns, not significant P MW >0.05). (E) Brain regions as in C, of animals expressing the membrane marker myr-tdTomato driven by ato-Gal4 revealing the morphology of the projections of dorsal cluster neurons within the medulla ; brains were from adults at 2-5 days (young) and 24-29 days (old) after eclosure, expressing myr-tdTomato either alone (control) or together with tau RNAi and shot RNAi (tau RNAi shot RNAi ). (F) Quantification of the experiments in E, displayed as number of branches per axon projecting into the medulla (the number of axons analysed is indicated in each bar; ns, not significant P MW >0.05). Scale bar: 10 mm in A and 40 mm in C and E. A statistics summary of the data shown here is available in Figure 3-source data 1.  Tau and Shot regulate the activity of kinesin-3 Type 3 kinesins are the predominant motors driving axonal transport of synaptic proteins (Hirokawa et al., 2010). This is also the case for the Drosophila homologue Unc-104 (also called Imac) (Pack-Chung et al., 2007). We found that unc-104 170 null mutant primary neurons at 2 DIV have a vast reduction of Syt-stained synapses ( Figure 5A). This phenotype is strikingly similar to the one observed in shot-tau mutant neurons, and suggested that Shot-Tau might regulate Unc-104 function.
To test this hypothesis, we performed genetic interaction studies. We found that primary neurons stained for Syt at 2 DIV and heterozygous for all of the three genes (shot -/+ unc-104 -/+ tau -/+ ) displayed significant reduction in the number of Syt-stained synapses when compared to heterozygous condition of the unc-104 or shot-tau mutant alleles alone ( Figure 5A). Also triple-heterozygous mutant embryos at late stage 16 displayed reduced Syt staining at neuromuscular terminals, but increased staining in the cell bodies of CNS and sensory neurons ( Figure 5C; see Figure 2-figure supplement 1 for a schematic drawing of the embryonic NMJ and CNS). Therefore, unc-104 170 mutant, shot-tau mutant, and triple-heterozygous mutant neurons all show similar phenotypes, both in culture and in vivo, suggesting a functional link between these three proteins.
Type 3 kinesins are anterograde motor proteins that move towards axon tips in mouse neurons (Niwa et al., 2013), and we also find Drosophila Unc-104 to be distally enriched in the axons of primary neurons at 2 DIV and in embryonic motorneurons in vivo ( Figure 5D-E). In mouse, this distal localisation was shown to be suppressed when blocking kinesin-3 mobility (Niwa et al., 2013). Also in shot-tau mutant neurons in culture and in vivo, Unc-104 localisation in distal axons is reduced whereas levels in the somata are increased ( Figure 5D-E), suggesting that insufficient amounts of Unc-104 move from the somata into axons.
To test whether diminished Unc-104 levels in axons are the cause for the synaptic defects in shottau mutant conditions, we over-expressed Unc-104, which fully restored synapse numbers in shottau mutant neurons at 2 DIV ( Figures 5B versus 1D). Notably, Unc-104 over-expression in shot-tau mutant neurons achieved this rescue of synapses in neurons with significantly less axonal branches ( Figure 3-figure supplement 3F), clearly demonstrating that both features are regulated independently of each other.
We next examined whether Unc-104 plays comparable roles also during synapse maintenance in the ageing brain. We used the ato-Gal4 driver (Zschätzsch et al., 2014) and co-expressed Unc-104 together with shot RNAi and tau RNAi . To label synapses we expressed the presynaptic marker neuronal Synaptobrevin-GFP (nSyb-GFP, due to technical reasons the use of nSyb-GFP was more convenient than Syt-GFP). Consistent with our previous findings with Syt-GFP ( Figure 3C-D), also nSyb-GFP experiments from A, given as the number of nSyb or Syt puncta in axons and growth cones; the number of analysed neurons is given in the bars (***P MW <0.001). (C) Quantification of various transport parameters generated from live movies of axons of wildtype or shot-tau mutant neurons (shot -/tau -/-) at 8 HIV with elav-Gal4 driven expression of UAS-Syt-GFP. Axonal anterograde and retrograde velocities show only subtle or no alteration in the axons of shot-tau neurons. On the contrary, the numbers of vesicles in axons of shot-tau neurons are sharply decreased and increased in the somata (**P MW <0.01; *P MW <0.05; ns, not significant P MW >0.05). (D) Magnified views of the somata from primary Drosophila neurons at 2 DIV, obtained from wildtype (wt) and shot-tau mutant embryos (shot -/tau -/-), co-stained with antibodies against Syt. To document the protein content within cell bodies, several z stacks per neuron were obtained and fused as maximal projection; the cell bodies show higher levels of Syt in shot-tau mutant neurons as compared to wildtype (number of assessed cells is indicated in the bars, average staining intensity normalised to wildtype; ***P MW <0.001). (E) The dorsal peripheral nervous system (PNS) of wildtype andshot-tau embryos at late stage 16 (stages according to) (Campos-Ortega and Hartenstein, 1997) stained for Syt (green), FasII (red) and the pan-neuronal nuclear marker Elav (blue). The nascent NMJ at the tip of the inter-segmental motornerve (red) in wildtype contains high levels of Syt (white arrow) whereas the somata of sensory neurons (blue and grey in insets) contain low levels (open arrow); in shot-tau homozygous embryos the somata of sensory neurons have high levels of Syt (arrow and inset), whereas there is only little staining at the nerve tip (open arrowhead). Scale bars: 10 mm in A, 5 mm in D and 5 mm in E. A statistics summary of the data shown here is available in Figure 4-source data 1.  Taken together, our data are consistent with a model where Shot-Tau loss generates a road block which inhibits Unc-104 translocation from the soma into axons, causing synaptic defects at developmental stages and in ageing neurons.

Loss of Shot-Tau induces microtubule destabilisation accompanied by changes in JNK activation
To address the mechanistic links from loss of Shot-Tau to aberrant transport and synaptic defects, we focussed on microtubules. Shot localises along microtubules, and shot mutant neurons treated with the microtubule-destabilising drug nocodazole display unusual gaps in their axonal microtubule bundles ( Figure 6B-C) (Alves-Silva et al., 2012;Sanchez-Soriano et al., 2009). Tau also localises along microtubules ( Figure 6A, Video 1), and tau MR22 mutant neurons likewise displayed axonal microtubule gaps upon nocodazole treatment which could be rescued with targeted expression of Tau ( Figure 6B-C). Both, shot and tau mutant neurons treated with nocodazole displayed on average one gap per axon. This number is significantly increased to~3 gaps in shot-tau mutant neurons ( Figure 6B-C), demonstrating that Tau and Shot share a common function in microtubule stabilisation.
To test whether their roles in microtubule stabilisation and synapse regulation are linked, we treated shot-tau mutant embryos at early stage 16 for 3 hr with the microtubule-stabilising drug epothilone B (Goodin et al., 2004). We found a significant rescue of Syt levels at motoraxonal endings, which was not observed in vehicle-treated controls ( Figure 6D-E). Therefore, a decrease in microtubule stability is a likely cause for defective transport of synaptic proteins in shot-tau mutant neurons. It could be argued that Shot-Tau dependent microtubule stabilisation directly regulates processive advance of kinesins in axons (see Discussion), yet the rather normal transport dynamics Figure 5 continued or triple-heterozygous for shot 3 tau MR22 unc104 imac170 mutations (shot +/tau +/-unc104 +/-), co-stained with antibodies against tubulin (Tub, magenta) and Syt (green). The graph shows the quantification of the data including also unc104 -/+ and shot -/tau -/controls. (B) Quantification of Syt puncta in two day old neurons, obtained from embryos that were wildtype or shot -/tau -/with elav-Gal4 driven expression of UAS-unc-104 (compare Figure 1D). (C) The dorsal peripheral nervous system (PNS) and the central nervous system (CNS) of wildtype and shot 3 tau MR22 unc104 imac170 triple heterozygous embryos at late stage 16 (stages according to Campos-Ortega and Hartenstein, 1997) stained for Syt (green), FasII (red in upper panel) and the panneuronal nuclear marker Elav (blue); for illustration of the imaged tissue see Figure 2-figure supplement 1. The nascent NMJ at the tip of the intersegmental motornerve (red in upper panels) in wildtype contains high levels of Syt (arrowheads) whereas the somata of sensory neurons (blue; demarcated by dashed lines) contain low levels (open arrows); in shot 3 tau MR22 unc104 imac170 triple heterozygous embryos the somata of sensory neurons have high levels of Syt (arrows), whereas there is only little staining at the nerve tip (open arrowhead). In the ventral nerve cord of wildtype (lower panels), Syt is confined to the neuropile (synapse containing CNS compartment; arrowheads) and excluded from the cortex (compartment with the cell bodies of inter-and motorneurons); in the ventral nerve cord of shot 3 tau MR22 unc104 imac170 triple heterozygous embryos, there are segmental groups of cell bodies displaying higher Syt levels (arrows). (D) Primary Drosophila neurons at 2 DIV, obtained from wildtype (wt) and tau-shot mutant embryos, stained with antibodies against pan-neuronal HRP (magenta) and Unc-104 (green); Unc-104 in distal axon segments (emboxed and magnified in insets) is enriched in wildtype but much weaker in shot-tau mutant neurons (chevrons indicate neuronal somata). Data were quantified as average intensity of Unc-104 at the distal end of the axon divided by the average intensity at the soma.  Axons of Drosophila neurons at 6 HIV with the following genotypes: wildtype (wt), shot 3 (shot -/-), tau MR22 (tau -/-), tau rescue (tau -/-UAS-tau) and shot-tau (shot -/tau -/-). Neurons were treated for 2.5 hrs with vehicle (DMSO) or 20 mM nocodazole, fixed and stained with anti-Tubulin (Tub, magenta and white) Figure 6 continued on next page we observed upon live imaging in shot-tau mutant neurons clearly excluded this possibility ( Figure 4C).
Instead, we hypothesised that microtubule aberration indirectly promotes a transport roadblock in somata. As a potential mediator, we suspected the JNK signalling pathway which is known to respond to a number of cellular stresses (see Discussion). To test our hypothesis, we investigated the pattern of JNK activity, using an antibody against phosphorylated JNK (JNK-P) (Langen et al., 2013). In wild type embryos at stage 16, we found high accumulations of JNK-P at motoraxon tips and low levels in the somata of CNS and sensory neurons ( Figures 6F and 7A), i.e. a localisation pattern similar to that of synaptic proteins and Unc-104 ( Figure 5C-E). This distribution was altered in single tau MR22 or shot 3 mutant embryos, showing higher levels of JNK-P in neuronal somata and lower levels at the tips of motoraxons ( Figure 7A). This altered pattern was intensified in shot-tau double mutant neurons ( Figure 7A) and clearly reminiscent of the redistribution patterns observed with synaptic proteins and Unc-104 in these neurons ( Figures 4E and 5E). Notably, these changes in the pattern of JNK activation were reproduced when inducing microtubule stress by applying nocodazole to early stage 16 wildtype embryos ( Figure 6F). Complementary to this finding, treatment of shot-tau mutant neurons with the microtubule stabilising drug epothilone B, increased the localisation of JNK-P at axonal tips and reduced the aberrant localisation in somata (Figure 6-figure supplement 1A,B).
These data suggested a cascade of events where shot-tau mediated microtubule destabilisation or stress triggers abnormal JNK activation in somata which, in turn, causes a somatic block of Unc-104 mediated synaptic transport. In strong support of this hypothesis, the three key players of this cascade, JNK-P, Unc-104 and synaptic proteins, show a striking correlation by concentrating unanimously at axon tips in wildtype, but in somata in shot-tau mutant neurons ( Figures 4E, 5E and 7A). and phalloidin (Pha, green). Only shot 3 , tau MR22 , and shot-tau double mutant displayed gaps in their axonal microtubule bundles upon nocodazole treatment, but not wildtype and tau mutant embryos with Tau rescue. (C) Quantification of the experiments in B, indicated as the number of breaks in the microtubule staining per axon (number of analysed neurons is indicated in bars; ***P MW <0.001; **P MW <0.01; ns, not significant P MW >0.05). (D) Embryonic motoraxons of wildtype and shot-tau embryos at late stage 16 treated with vehicle (DMSO) or 50 nM of the microtubule stabilising drug epothilone B for 3 hr and stained with FasII (magenta) and Syt (green); in wildtype, the nascent NMJ at the nerve tip contains high levels of Syt (arrowheads); in shot-tau embryos there is only little Syt staining at the nerve tip (open arrowhead). Treatment of shot-tau embryos with 50nM epothilone B increases the levels of Syt at the tip of motornerves (arrowheads). (E) Quantification of the experiments shown in D, measured as the average intensity of Syt at nascent NMJs and normalised to wildtype (number or assessed NMJ is indicated in bars; ***P MW <0.001; ns, not significant P MW >0.05). (F) Upper (PNS) and lower (CNS) panels show the same locations of late stage 16 wildtype embryos as shown in Figure 5C

Aberrant JNK signalling upon Shot-Tau loss causes the somatic roadblock of Kinesin-3 transport and synaptic defects
To prove that JNK acts downstream of shot-tau to regulate Unc-104, we first expressed a constitutively active variant of the MAPKK Hemipterous (Hep AC ), a known activator of the JNK pathway (Glise et al., 1995). In late stage 16 embryos, indiscriminate JNK activation through Hep AC triggered an accumulation of Unc-104 and Syt in somata and a decrease of both proteins at axon tips ( Figure 7B-C). Also in primary mature neurons at 2 DIV, Hep AC caused a reduction in the number of synapses to 43% ( Figure 8A-B). Therefore, Hep AC expression mimicked the defects observed in shot-tau mutant neurons, consistent with a model where aberrant JNK pathway activation upon Shot-Tau loss causes the somatic block of Unc-104-dependent synaptic transport.
If our model is correct, attenuation of the JNK pathway should rescue the synaptic defects in shot-tau mutant neurons. To downregulate the JNK pathway, we used loss-of-function of the JNK activating kinase Wallenda/DLK (wnd 2 ) (Valakh et al., 2013) and overexpression of the JNK inhibiting phosphatase Puckered (Puc) (Martin-Blanco et al., 1998). When combined with the tau MR22 mutation, both genetic tools for JNK downregulation fully rescued the synaptic defects in primary neurons at 2 DIV ( Figure 8A-B). Even more, wnd 2 fully rescued synapse reduction in shot-tau double mutant neurons at 2 DIV ( Figure 8A-B), and Syt levels at NMJs of shot-tau mutant embryos in vivo ( Figure 8C-D versus Figure 2).
So far, our data suggest that JNK acts downstream of shot-tau to regulate Unc-104. In this case, attenuation of the JNK pathway should also rescue aberrant Unc-104 localisation in shot-tau mutant neurons. Accordingly, wnd 2 restored correct localisation of Unc-104 in shot-tau double mutant neurons at 2 DIV (Figure 8-figure supplement 1), and in shot-tau mutant embryos in vivo (Figure 8figure supplement 2B versus Figure 5D,E).
Having confirmed JNK as the essential mediator of shot-tau synaptic defects, we tested whether it acts through the canonical pathway involving the AP1 transcription factor (Ciapponi and Bohmann, 2002), or by phosphorylating other targets in the cytoplasm. For this, we used a well established LOF mutant allele of the kayak/c-fos gene (kay 2 ) which removes one constituent of the AP1 heterodimer and mimics various known JNK mutant phenotypes (Ciapponi and Bohmann, 2002). Unlike wnd 2 or Puc overexpression, the kay 2 mutation failed to rescue the synaptic phenotypes of tau MR22 in primary neurons ( Figure 8A-B). This strongly suggests that the JNK pathway inhibits synaptic transport by acting independently of AP1 dependent transcription.
In conclusion, the JNK pathway is both required and sufficient to mediate between Shot-Tau loss and their downstream synaptic phenotypes in developing neurons by causing a transport roadblock, and this likely occurs through phosphorylating cytoplasmic targets in the soma.

JNK mediates ageing related synaptic decay caused by Shot-Tau loss
To test whether JNK plays comparable roles also during synapse maintenance in the ageing brain, we used the ato-Gal4 driver (Zschätzsch et al., 2014) and co-expressed a dominant negative variant of the Drosophila JNK homolog Basket (bsk DN ) (Adachi-Yamada et al., 1999) together with shot R-NAi , tau RNAi and nSyb-GFP. We found that co-expression of bsk DN was able to rescue the synapse reduction phenotype ( Figure 8E,F), thus confirming JNK as a mediator between the effects of shottau and precocious synapse decay also in ageing neurons (summarised in Figure 9).

A new mechanism of synaptic pathology caused by loss of Tau and Shot
The aim of our studies was to understand the role of endogenous Tau in neurons with particular attention to synapses. This effort was essentially aided by our finding that Tau and Shot are functionally redundant, and the subsequent incorporation of Shot into our studies. The robust phenotypes of shot-tau double-mutant neurons enabled us to demonstrate roles of Shot-Tau during the formation and maintenance of pre-synaptic sites in axons, and unravel the underlying mechanistic cascade which involves three major steps. Firstly, the absence of Shot-Tau causes microtubule destabilisation. Secondly, this cytoskeletal stress causes aberrant JNK activity patterns with upregulation in somata and downregulation at axon tips. Thirdly, aberrant JNK activation leads to a somatic roadblock for kinesin-3 mediated transport, thus inhibiting the delivery of synaptic proteins and eventually causing synapse loss. Depending on whether the functions of Tau and/or Shot are removed during development or ageing, either the formation or the maintenance of synapses are affected, respectively (Figure 9).
Our model explaining the function of Tau and Shot in synapse establishment and maintenance by regulating intracellular transport, is supported by loss-and gain-of-function experiments, genetic interactions and cross-rescue experiments. The initial finding that shot-tau mutant neurons had reduced branch numbers, could have suggested that defects on synapse numbers is indirect. However, experiments with double knock-down in culture and in the adult brain clearly showed strong synapse reduction whilst maintaining normal branch patterns, and Unc-104 rescued synapse reduction in shot-tau mutant neurons without major increases of the branch pattern in these neurons. These results clearly demonstrate that changes in neuronal morphology are not the cause of changes in synapse number.
Notably, the synaptic function of Tau described here for Drosophila might be conserved in higher animals or humans, since also aged Tau knock-out mice develop a reduction of synaptic proteins from the hippocampus (Ma et al., 2014).

Implications of our findings for Tau-related pathologies
Our findings provide potential new mechanistic explanations for various tau related brain disorders. For example, microdeletions in the region of MAPT (the human tau gene) cause intellectual disability (Sapir et al., 2012), and Tau's synapse-promoting roles m ay well contribute to this pathology. Furthermore, various tauopathies are characterised by precocious pathological loss of synapses. Our data suggest that loss of tau could lead to defective synapse maintenance and eventually synapse loss. For example, a prominent group of dementias which lacks distinctive histopathology (DLDH) are characterised by the loss of Tau (Zhukareva et al., 2001). Further tauopathies including Alzheimer disease, typically involve hyper-phosphorylation and aggregate formation of Tau (Hernández and Avila, 2007;Williams, 2006). In this scenario, there are two parallel, non-exclusive modalities through which Tau can cause pathology. Firstly, detached hyper-phosphorylated tau attains gain-of-function roles in the cytoplasm damaging neurons through a number of mechanisms (Morris et al., 2013). Secondly, hyper-phosphorylation of tau causes a loss-of-function condition by depleting Tau from microtubules. However, since Tau knock-out mouse models mostly failed to show significant phenotypes and the neuronal functions of endogenous tau remain little understood, the pathological importance of Tau loss from microtubules has been marginalised (Morris et al., 2013). Our results now re-emphasise the notion that loss of Tau from microtubules could contribute to neurodegenerative pathology and deliver mechanistic explanations.
To unravel pathomechanisms caused by the loss of Tau, we mostly used combined depletion of Shot and Tau, which gave us strong phenotypes, ideal for short-term experimental approaches. However, we found similar, yet milder phenotypes if only Tau was depleted, suggesting that the mechanisms described here could well contribute to slow disease progression in tauopathies. Our discovery that spectraplakins are MAPs which functionally overlap with Tau, opens up new Gal4 driven expression of UAS-puc (tau -/-UAS-puc), tau MR22 kay 2 (tau -/kay -/-) and shot 3 tau MR22 wnd 2 (shot -/tau -/wnd -/-), all stained with antibodies against Tubulin (tub, magenta) and Syt (green). Insets correspond to emboxed areas and show a magnified view of the Syt staining. (B) Quantification of experiments in A, shown as the number of Syt puncta normalised to wildtype (number of assessed neurons is shown in the bars, ***P MW <0.001; **P MW <0.01; *P MW <0.05; ns, not significant P MW >0.05). (C) Inter-segmental motornerves in the dorsal area of wildtype and shot 3 mutant embryos at late stage 16, stained against FasII (magenta) and Syt (green); insets correspond to emboxed areas and show a magnified view of the most dorsal nascent NMJs stained for Syt; note the rescue of Syt localisation if Wnd is absent in tau-shot mutant background. (D) Quantification of the experiments in C, measured as the average intensity of Syt normalised to wt (number of assessed NMJs is shown in the bars; ***P MW <0.001; *P MW <0.01). (E) A region of Drosophila adult brains including the medulla; UAS-nSyb-GFP is expressed in dorsal cluster neurons using atonal-Gal4, either alone (control), together with tau RNAi and shot RNAi (tau RNAi shot RNAi ) or together with tau RNAi , shot RNAi and UAS-bsk DN . Brains are shown at 2-6 days (young) and 26-30 days at 29˚C after eclosion (old); GFP-labelled synapses are decreased in old brains with shot-tau knock-down when compared to controls, and this effect is rescued by the expression of Bsk DN . (F) Quantification of experiments in E, shown as number of GFP-labelled synapses in old specimen per mean number of GFP-labelled synapses in young specimens of the respective genotype (number of analysed brains is indicated in the bars; ***P MW <0.001; **P MW <0.01). Scale bars: 5 mm in A, 10 mm in C and 40 mm in E. A statistics summary of the data shown here is available in Figure 8 experimental avenues for Tau studies. So far, spectraplakins have been linked to the degeneration of sensory and autonomous neurons (Edvardson et al., 2012;Ferrier et al., 2013), and it remains to be elucidated whether they may have similar roles also in the brain. Our results clearly hint at this possibility.
A novel mechanism for Tau-dependent regulation of neuronal transport The loss of Tau and/or Shot inhibits kinesin-3 mediated transport leading to accumulation of synaptic proteins in the soma of neurons. We propose a road-block mechanism suppressing the initiation of axonal transport in somata of Shot-Tau depleted neurons, which is caused indirectly through microtubule stress and mediated by JNK (Figure 9).
The involvement of microtubules in causing a transport block is supported by our experiments using microtubule stabilising and de-stabilising drugs which rescued or mimicked the shot-tau mutant phenotypes, respectively. Similarly, axonal transport defects and cognitive deficits of PS19Tg mice (expressing the P301S mutant form of human tau) and various other mouse and fly tauopathy models were shown to be rescued by microtubule-stabilising drugs (Gozes, 2011;Quraishe et al., 2013;Shemesh and Spira, 2011;Zhang et al., 2012), suggesting that the mechanisms we described may be conserved and relevant to disease.
The somatic road-block is a novel mechanism through which the loss of Tau can interfere with the transport of synaptic proteins and provides potential explanations also for somatic accumulations of postsynaptic proteins such as PSD-95, AMPA and NMDA receptors observed in mouse tauopathy models (Hoover et al., 2010;Shao et al., 2011). A likely mechanism causing a roadblock in intracellular transport could be the direct inactivation of Unc-104 or its associated adaptor proteins, for example through JNK or other kinases within its pathway. This mode of regulation has a clear precedent in kinesin-1 and its adaptor Jip which are directly phosphorylated by JNK leading to transport inhibition (Stagi et al., 2006). Unfortunately, our extensive attempts to co-immunoprecipitate JNK and Kinesin-3 were unsuccessful (data not shown), leaving open for now the exact molecular mechanism.

JNK is an important mediator between shot-tau induced microtubule stress and synapse loss
We propose that aberrant JNK activation downstream of microtubule destabilisation or stress is the ultimate cause for the defective delivery of synaptic proteins in Tau and/or Shot loss of function. Also in mouse, microtubule stress leads to somatic activation of the JNK pathway, suggesting this mechanism is likely to be conserved with vertebrates (Valakh et al., 2015).
The JNK pathway is emerging as a central player in neurodegenerative diseases. Its activation is prompted by various neurodegeneration risk factors including oxidative stress, inflammation, and ageing (Lotharius et al., 2005;Valakh et al., 2015). Furthermore, JNK is activated in AD patients (Coffey, 2014) and in several AD models where it triggers progression of the pathology (Sclip et al., 2014). The new link between Tau/spectraplakins, JNK and synapses we propose here, is therefore likely to provide mechanistic explanations for synaptic pathology observed in AD and other tauopathies.

Conclusions
We have delivered an important conceptual advance by revealing a new mechanistic cascade which can explain synaptic decay as the consequence of Tau loss from microtubules. Furthermore, we identified a previously unknown functional redundancy with spectraplakins as a promising new avenue for research on Tau. Our findings emphasise that Tau detachment from microtubules can be an important aspect contributing to the pathology of tauopathies in parallel to roles of hyper-phosphorylated Tau in the cytoplasm. Synaptic decay, axonal transport and alterations in the JNK pathway are emerging as central players in a wider range of adult-onset neurodegenerative diseases, and here we have aligned these factors into a concrete mechanistic cascade.

Cell culture
The generation of primary neuronal cell cultures was described previously Sánchez-Soriano et al., 2010). In brief, to generate Drosophila primary cultures, neurons were extracted from stage 11 embryos (Campos-Ortega and Hartenstein, 1997). Whole embryos were treated for 1 min with bleach to remove the chorion, sterilized for~30 s in 70% ethanol, washed in sterile Schneider's/FCS, and eventually homogenized with micro-pestles in 1.5 ml tubes containing about 21 embryos per 100 ml dispersion medium. This was followed by 4-5 min incubation in dispersion buffer containing collagenase and dispase at 37˚C, followed by a wash in sterile Schneider's/FCS and eventually resuspension in the final volume of Schneider's medium. Cells were plated onto coverslips coated with 0.5 mg/ml Concanavalin A (Sigma) and kept as hanging drop cultures in air-tight special culture chambers (Küppers-Munther et al., 2004) usually for 8 hr, 2-3, 18 or 26 days at 26˚C. Dilutions of the MT destabilising drug nocodazole (20 mM; Sigma) in Schneider's medium were prepared from stock solutions in DMSO. For controls, equivalent concentrations of DMSO were diluted in Schneider's medium.

Drug treatment of Drosophila embryos
Stage 16 embryos were dissected flat in D ulbecco's Phosphate Buffered Saline (Budnik et al., 2006) and cultured for several hours in Schneider's medium with or without drugs. Dilutions of the microtubule destabilising drug nocodazole (20 mM; Sigma) and the microtubule stabilizer epothilone B (50 nM; Sigma) in Schneider's medium were prepared from stock solutions in DMSO. For controls, equivalent concentrations of DMSO were diluted in Schneider's medium.

Microscopy and data analysis
Standard documentation was performed with AxioCam monochrome digital cameras (Carl Zeiss Ltd.) mounted on BX50WI or BX51 Olympus compound fluorescent microscopes. Z-stacks of embryonic CNSs were taken with a Leica DM6000 B microscope and extracted with Leica MM AF Premier software. Z-stacks of adult fly brains were taken with a Leica DM6000 B microscope or with a 3i Marianas Spinning Disk Confocal Microscope. Using custom software written in Python and NumPy, fly brain images taken with a Leica DM6000 B microscope were individually band-pass filtered (A trous wavelet [1][2], linear 3x3 filter, keeping scales 1-4) to remove stationary background.
To quantify the number of synaptic densities in mature neurons in culture and the number of vesicles containing synaptic proteins in 8h neurons in culture, we used ImageJ (RRID:SCR_003070). In detail, we used thresholding to select synaptic densities from axons of single isolated cells, followed by particle analysis. For all experiments done in parallel, identical thresholds were used. For the quantification of synapses in mature neurons in culture, we selected polarised neurons with a clear distinguishable axon, the same neurons were used to study axon length and number of branches.
To quantify synaptic proteins or Unc-104 in the soma of neurons, we manually selected the area of the somata using the tubulin or HRP channel and measured the signal intensity derived from the Syt or Unc-104 channel. To measure the levels of Unc-104 at the tip of axons, we selected an area of the same size at the most distal part of axons and measured the signal intensity derived from the Unc-104 channel. To quantify synaptic proteins at the tip of embryonic motorneurons in vivo. we manually selected the area occupied by the growth cones using the FasII staining and measured the signal intensity derived from the Syt channel; the background intensity was subtracted. Images used for these measurements did not contain saturated levels. Also, to measure the number of synaptic densities in DC neurons in the medulla of the adult brain, we used thresholding to select synaptic densities followed by particle analysis. The number of branches in the medulla per DC neuron was quantified manually. To quantify MT stability upon nocodazole treatment, we counted the number of breaks in the microtubule bundle per axon.
Time lapse imaging of cultured primary neurons (in Schneider's/FCS) was performed on a Delta Vision RT (Applied Precision) restoration microscope using a 100x/1.3 Ph3 Uplan Fl objective and the Sedat filter set (Chroma 89000). The images were collected using a Coolsnap HQ (Photometrics) camera. The temperature control was set to 26˚C. For time lapse recording, images were taken every 2 s for 2 min. To generate transport measurements, vesicles containing fluorescently tagged Syt were tracked manually using the manual tracking plugin for ImageJ.
Statistics, replicates and sample-size All data are shown as mean with SEM. Statistical analyses were performed in GraphPad Prism using Mann-Whitney Rank Sum Tests (indicated as P MW ) or Chi 2 (P Chi ), with 95% confidence intervals. The exact p-values and sample size are indicated in the figure legends.
For each primary neuronal cell culture experiment (technical replication), approximately 30 to 40 embryos were used. Neurons obtained from those embryos were divided and cultured in 3 to 4 independent chambers (biological replication). The sample size provided corresponds to the number or neurons studied. Most experiments were performed at least 2 times (2 technical repeats) meaning a minimum of 60 embryos were used, and a minimum of 6 independent culture chambers were studied. These experiments are shown in Figure 1B (tau -/-, 4 technical replications, 11 biological replications), Figure 1D (Syt, shot -/-, 3 technical replications, 9 biological replications; shot -/tau -/-, 3 technical replications, 9 biological replications), Figure 1D (Brp shot -/-, 2 technical replications, 8 biological replications; tau -/-2 technical replications, 6 biological replications), Figure 3B (all genotypes at each time point 2 technical replications, 6-8 biological replications), Figure 4D (all genotypes 2 technical replications, 6 biological replications), Figure 5B (2 technical replications, 6 biological replications), Figure 8B (tau -/-Uas-Puc, 3 technical replications, 8 biological repeats; tau -/wnd -/-, 2 technical replications, 6 biological repeats; shot -/tau -/wnd -/-, 2 technical replications, 6 biological replications). Other experiments were as follows: UAS-tau rescue experiment of synaptic defects ( Figure 1B) and microtubule stability defects ( Figure 6C) in tau -/were performed with 1 technical replication which included at least 30 embryos distributed in 4 and 2 independent chambers or biological replications, respectively. However, for these particular experiments we used a co-culture technique in which tau -/control neurons were cultured alongside with tau -/-UAS-Tau neurons and therefore are subject to the same environmental variations. For shot-tau mutant neurons stained with Brp ( Figure 1D) we used 1 technical replication which included at least 30 embryos and 3 independent biological replications. For tau -/kay -/and kay -/-( Figure 8B), we used 1 technical replication which included at least 30 embryos and 5 independent biological replications. For the measurement of Syt and nSyb synaptic puncta in 8 HIV neurons ( Figure 4B), we performed 1 technical replication for each synaptic protein, which included at least 30 embryos each and 2 independent biological replications. For the measurement of Unc-104 in 2 day neurons ( Figure 5D) we performed 1 technical replication which included at least 30 embryos and 45 neurons were measured. To account for variations in the immunohistochemistry procedure, we calculated the ratio between distal axon and soma.
For the quantification of axonal transport ( Figure 4C), we performed 2 technical replications which included at least 30 embryos each, 2 independent biological replications from which 10-14 neurons were analysed. For measurements of Syt in the nascent embryonic NMJ ( Figure 2B and 8C) we used at least 15 embryos per genotype (biological replication) and performed at least 2 technical replications. Both controls and mutant embryos were dissected and stained in the same chamber and therefore subjected to equal conditions ( Figure 2B shot -/-3 technical replications, 30 biological replications, tau -/-2 technical replications, 15 biological replications, shot -/tau -/-3 technical replications, 17 biological replications; Figure 8C shot -/tau -/wnd -/-2 technical replications, and 15 biological replications). For treatment of embryos with epothilone B ( Figure 6E) we used at least 12 embryos per genotype and performed 2 technical replications. Both controls and shot-tau mutant embryos were present in the same treatment chambers and therefore subjected to equal conditions. For the study of synaptic phenotypes in adult brains ( Figure 3D), we performed at least 3 technical replications and used a minimum of 30 brains in total per genotype. For the quantification of axonal branches in adult brains we performed at least 2 technical replications and we used a minimum of 11 brains. For rescues of synaptic phenotypes in adult brains with UAS-bsk DN ( Figure 8F) we performed 3 technical replications and used a minimum of 40 brains in total.