To compare the spatiotemporal properties of synchronous and asynchronous release, hippocampal neurons in culture were infected with a pH-sensitive indicator pHluorin targeted to the vesicle lumen via vGlut1 (vGlut1-pHluorin) (Balaji and Ryan, 2007; Leitz and Kavalali, 2011; Voglmaier et al., 2006) using a lentiviral infection at DIV3, and imaged at DIV16–19 at 37°C. A continuous acquisition was performed at 50 ms/frame for 120 s, with stimulation at 1 Hz precisely synchronized with the beginning of an acquisition frame (Figure 1Ai). Individual AP-evoked release events were robustly detected and localized with ~27 nm localization precision throughout the observation time period (Figure 1Aii) as we described previously (Maschi et al., 2018; Maschi and Klyachko, 2017).

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To define a population of asynchronous events, we first used temporal considerations. Asynchronous release occurs with a variable delay from an AP, ranging from tens to hundreds of milliseconds. The release events that were detected in the second frame following an AP, and thus had a delay of at least 50 ms, were considered to represent asynchronous events in our measurements. Events detected in the first frame were considered synchronous. Notably, events must occur within the first ~10–20 ms of the frame to produce enough photons to be above the detection limit, thus effectively limiting the population of events detected in the first frame to largely synchronous events. To compare the two forms of release within the same synapses, a functional representation of the AZ was first defined for each bouton. The AZ area was defined as the convolute hull of all synchronous events detected in an individual synapse and the AZ center was defined as its centroid (Figure 1B). We have previously found that this functional definition of the AZ dimensions closely matches the ultrastructurally defined AZ dimensions observed by EM (Maschi and Klyachko, 2017; Schikorski and Stevens, 1997). Individual release sites in each AZ were then defined by using hierarchical clustering of synchronous events with a 50 nm clustering diameter (see ‘Materials and methods’; Maschi et al., 2018; Maschi and Klyachko, 2017). Subsequently, asynchronous release events detected in each bouton were examined in relationship to these synchronous event-based AZ maps.

We first used the distance to the AZ center as a simple criterion to compare the spatial properties of the two types of release, resulting in a highly significant difference in their spatial distributions (6938 synchronous events; 3891 asynchronous events, 21 coverslips from eight independent cultures; p<0.0001, two-sample K-S test; Figure 1C; values and statistical comparisons are listed in Supplementary file 1), and the overall larger distance to the AZ center from asynchronous than from synchronous events (Figure 1C). Visual examination of the AZ maps further revealed the unexpected feature of asynchronous events evident in the presence of two spatially distinct subpopulations: one group of asynchronous events occurred within the AZ and had a tendency to localize closer to the AZ center, while the second group was localized outside of the functionally defined AZ (Figure 1B). To examine the spatial properties of these forms of release quantitatively, we normalized the distance measurements using a line that connects the AZ center through the event location to the AZ border (Figure 1D). The normalized distance of 1 represents an event occurring at the AZ border. Asynchronous events with a normalized distance to the AZ center ≤1 were considered inside the AZ (‘in-AZ’), while the events with normalized distance >1 were considered outside the AZ, a subpopulation that we called ectopic events. It is worth noting that, within these definitions, all synchronous events were localized inside the AZ limits because they were used to define it (Figure 1B). The vast majority (98%) of synapses had asynchronous events inside the AZ, and 79% of synapses displayed ectopic asynchronous events during our observation period (Figure 1E). The relative preference for the ‘in-AZ’ subgroup varied in the synapse population in a range of 0–40% with an average of ~25% of all detected events, while for ectopic events the range was 0–20% with an average of ~9% of all events (Figure 1E). When comparing among asynchronous events, ~73% were localized ‘in-AZ,’ and ~27% were localized ectopically (Figure 1F). This spatial distribution of asynchronous events cannot simply arise randomly since modeled events distributed randomly in the same boutons (see ‘Materials and methods’) follow a significantly different distribution (p<0.0001, two-sample K-S test; Figure 1F, Supplementary file 1). Moreover, in contrast to the entire population of asynchronous events, a subgroup of these events inside the AZ was localized significantly closer to the AZ center than the synchronous events in the same synapses (p<0.0001, two-sample K-S test; Figure 1G vs. C, Supplementary file 1). These opposite spatial properties of the ‘in-AZ’ subgroup vs. the entire population of asynchronous events cannot arise from a single population with a continuum of spatial properties, which is artificially divided into two populations by our definition of the AZ limits. Moreover, the error of event localization (i.e. spatial precision of localization) was nearly the same for synchronous and asynchronous release events either inside or outside of the AZ (Figure 1—figure supplement 1A), and thus cannot account for the observed differences in their spatial distribution.

We note that the above analyses rely on the functional definition of the AZ limits. Our current definition is in close agreement with the ultrastructural measurements of the AZ dimensions in these synapses (Maschi and Klyachko, 2017; Schikorski and Stevens, 1997), and with the number of detected event clusters/release sites per AZ (Figure 1—figure supplement 1B and C; Sakamoto et al., 2018; Tang et al., 2016). Nevertheless, this definition depends on our ability to fully ‘sample’ the available release sites within each AZ during the observation period. We thus asked whether ectopic events could simply represent locations of release sites that were not ‘sampled’ by the synchronous events and thus mistakenly appear as being outside of the functional AZ limits. If this is the case, then the proportion of asynchronous events inside the AZ should asymptotically approach 100% as the number of detected synchronous events per synapse increases. In contrast, we found that this proportion reached an asymptote of ~83% (Figure 1—figure supplement 1D), indicating that ~17% of asynchronous release still occurs outside of the functionally defined AZ limits. Reaching the asymptote (tau of approximately six events, Figure 1—figure supplement 1D) implies that once a certain number of synchronous events has been detected, detecting more events does not alter the proportion of asynchronous events that are inside/outside the AZ. Similarly, the mean normalized distance to the AZ center per synapse reaches the asymptote following an exponential with a tau of approximately five events (Figure 1—figure supplement 1E). These analyses provide further support for the presence of two distinct populations of asynchronous release events, one localized inside the AZ and another localized ectopically.

In the subsequent spatial analyses, to achieve a compromise between reducing this sampling issue and keeping enough data to perform the required analyses, we considered only boutons with a minimum of 10 detected events during the observation period. Placing the cutoff at 15 events during a 120 s period would drastically reduce the dataset, making most of the analyses impossible.

The 50 ms acquisition time per frame used in our measurements is required for our imaging approach to achieve adequate signal-to-noise ratio (SNR) for the precise event localization. Although ectopic asynchronous events represent a relatively small proportion of all detected events (~9%), it is possible that some ectopic events may be detected in the first frame and thus misidentified as synchronous events. This would broaden the definition of the AZ dimensions and shift the apparent occurrence of asynchronous events to less ectopic and more ‘in-AZ’ events. To test whether the limitations placed by the duration of acquisition contribute to the observed spatial differences among various forms of release, we sought to shorten the acquisition time from 50 ms to 25 ms by taking advantage of the near-total internal reflection fluorescence (near-TIRF) imaging (Myeong and Klyachko, 2022). Accordingly, this improved temporal resolution shortened the definition of synchronous release to within 25 ms from the stimulus and allowed us to compare it to three temporal windows for asynchronous release (25–50 ms, 50–75 ms, and 75–100 ms). We observed essentially the same results as above, including the presence of ~35% of ectopic release among asynchronous events (Figure 1H), and the preferential bias of asynchronous events inside the AZ for the AZ center (Figure 1I). We also found that the properties of asynchronous release were very similar for the three temporal windows examined, with a slight increase in the proportion of ectopic vs. ‘in-AZ’ asynchronous events with time, from 33% to 37% to 39% for the three time windows, respectively. This result suggests that ectopic events are more likely to occur with longer time delays (explored in more details below). The increased proportion of ectopic events (~35%) in these measurements as compared to 50 ms/frame recordings (~27%) is consistent with the notion that the AZ dimensions are slightly broadened in 50 ms recordings. Overall, this analysis demonstrates that the precise duration of the temporal windows used to define synchronous vs. asynchronous release does not affect the observed core differences in the spatial organization of the two forms of release, at least at the timescales tested. Because SNR was increased and the number of detected events decreased in recordings with 25 ms/frame acquisition time, subsequent experiments were performed using 50 ms acquisition time.

To confirm our observations using an independent approach, we performed detection of glutamate release events at single synapses using glutamate sensor SF-iGluSnFR(A184S) (Marvin et al., 2018), in combination with a near-TIRF imaging (see ‘Materials and methods’). Under the same experimental conditions, stimulation protocol, and definitions used above, this approach provided a robust detection of both synchronous and asynchronous individual glutamate release events (Figure 2A). In close agreement with the above results, we observed two populations of asynchronous events: ~71% of which were localized inside the AZ, while ~29% were localized ectopically (Figure 2B and C). Moreover, the subpopulation of asynchronous events inside the AZ had a strong spatial bias toward the AZ center (Figure 2D), further supporting the above results. Thus independent measurements support the presence of two spatially distinct populations of asynchronous events. We note that SF-iGluSnFR is localized throughout the plasma membrane and responds to glutamate diffusing from the site of vesicle fusion, resulting in a broader signal profile than produced by vGlut1-pHluorin, which response is localized to a single synaptic vesicle undergoing fusion. Thus measurements with SF-iGluSnFR have an intrinsically lower localization precision (by approximately threefold) comparing to vGlut1-pHluorin. Because the focus of this study is on precise spatial organization of different forms of release, all subsequent analyses were performed using vGlut1-pHluorin imaging.

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Another key spatial measure is localization of asynchronous events relative to the release sites utilized by synchronous events. This measure is independent of a specific definition of the AZ dimensions and allows us to approach a fundamental question: do asynchronous and synchronous events utilize the same or distinct release sites? Clustering of synchronous events using a hierarchical clustering algorithm with 50 nm diameter (see ‘Materials and methods’) revealed 8.9 ± 0.2 clusters/release sites per AZ (Figure 1—figure supplement 1B) or 2.8 ± 0.1 repeatedly reused release sites per AZ (with two or more events detected) (Figure 1—figure supplement 1C), in close agreement with the previous estimates (Gramlich and Klyachko, 2019; Maschi and Klyachko, 2017; Sakamoto et al., 2018; Tang et al., 2016). We then determined the distance from every asynchronous event to the center of the closest release site. Given the cluster diameter of 50 nm used in our analyses to define release sites, and a typical vesicle radius of ~25 nm, asynchronous events within 25 nm from the center of a release site were considered to occur in that site (Figure 3A). This analysis showed that, for the subpopulation of asynchronous events localized inside the AZ, only 25.4% occurred at release sites defined by synchronous events (Figure 3B). This small subpopulation was not significantly different in their distances to the AZ center from asynchronous events that did not utilize the same release sites, although the latter show a tendency to be slightly closer to the center (p=0.053, two-sample K-S test; Figure 3C, Supplementary file 1). Considering that ~27% of asynchronous release events are ectopic and by definition do not utilize the release sites involved in synchronous release, the overall overlap of two forms of release in the same release sites is only ~15%. To verify these observations, we used an alternative, nearest-neighbor analysis (Maschi and Klyachko, 2017) to quantify the distance from every asynchronous event inside the AZ to the nearest synchronous event (Figure 3D). To keep the two analyses comparable, this quantification was limited to synchronous events corresponding to release sites undergoing repeated utilization (with at least two release events detected). Similar to the clustering analysis above, we observed that only ~20% of asynchronous events were localized within 50 nm from a synchronous event (Figure 3D), supporting our findings above. We note that because of the limited duration of our recordings necessitated by the natural displacement of synapses in culture (Maschi and Klyachko, 2017), we cannot exclude the possibility that a somewhat larger degree of spatial overlap between synchronous and asynchronous release may exist. In summary, these results suggest a distinctive utilization of release sites by synchronous and asynchronous release events.

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In addition to observing two spatially distinct subpopulations of asynchronous events, we asked whether there are temporal differences between these two groups. To approach this question, we used the timing of synchronous release events as temporal points of reference; for every asynchronous event we measured the time elapsed from and to, respectively, the immediately preceding and immediately following synchronous events. We found that the ectopic asynchronous events display significantly longer time intervals from either the preceding synchronous events (Figure 4A) or the subsequent synchronous events (Figure 4B) compared to asynchronous events within the AZ. When only the subpopulation of asynchronous events inside the AZ was considered, we did not observe temporal differences for events detected inside and outside of release sites (Figure 4C and D). These results suggest that the ectopic asynchronous events are isolated not only spatially but also temporally from their counterparts inside the AZ. These findings support the presence of two distinct populations of asynchronous release events with different temporal and spatial features.

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Vesicle exocytosis is rapidly followed by endocytosis, and several mechanistically and kinetically different forms of vesicle retrieval have been identified (Chanaday and Kavalali, 2018). Whether different forms of vesicle release are coupled with different forms of retrieval remains poorly understood. Interestingly, at least in the case of synchronous release, fusion of q-dot-labeled synaptic vesicles is preferentially coupled with different forms of endocytosis depending on the spatial location of vesicle release (Park et al., 2012). Given distinctive spatial organization of synchronous and asynchronous release events, we asked whether these two forms of release utilize different exo-endocytosis coupling mechanisms.

The kinetics of the pHluorin signal following vesicle fusion is widely believed to reflect, in a large part, particularities of the exo-endocytosis processes (Balaji and Ryan, 2007; Chanaday and Kavalali, 2018; Leitz and Kavalali, 2011; Leitz and Kavalali, 2014). As the noisy nature of the individual events hindered their precise kinetic comparison within a single synapse, we first compared the average fluorescence traces of synchronous and asynchronous events across the synapse population (Figure 5A). The fluorescence decay of the average release events had two clearly distinct kinetic components (~60 ms and ~800 ms) (Figure 5B), in close agreement with previous studies identifying these two components as ultrafast and fast endocytosis, respectively (Balaji and Ryan, 2007; Chanaday and Kavalali, 2018; Leitz and Kavalali, 2011; Leitz and Kavalali, 2014). For synchronous events, ultrafast and fast components represented ~58% and ~42% of signal decay, respectively, while for asynchronous events this proportion was shifted toward smaller relative contribution of the fast component (Figure 5—figure supplement 1A). Further quantification of the average synchronous vs asynchronous event traces revealed significantly larger average synchronous event amplitude (p<0.001, Figure 5—figure supplement 1H), and major differences in the fast component of decay, which was significantly larger for synchronous than for asynchronous events (Figure 5C and D). In contrast, we found no significant differences in ultrafast component of endocytosis between the two types of release (Figure 5C and D). There were also no differences observed in endocytosis kinetics between the two subpopulations of asynchronous events, ‘in-AZ’ vs. ectopic (Figure 5—figure supplement 1B and C). We note that a larger amplitude of a decay component represents less efficient endocytosis since more of the fluorescence signal remains to be endocytosed.

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We next explored whether the observed differences in amplitude and endocytosis kinetics between the two forms of release may arise from their different spatial organization. To approach this question, we grouped release events as a function of distance from the AZ center using concentric rings of 100 nm in width (Figure 5E) and averaging events detected inside each ring. Surprisingly, we observed a significant increase in the amplitude of synchronous events with distance from the center of the AZ toward periphery (Figure 5F and Figure 5—figure supplement 1D). In contrast, asynchronous events in the same synapses did not show any measurable differences in amplitude across the AZ (Figure 5F and Figure 5—figure supplement 1D). Importantly, the distance-dependent increase in synchronous event amplitude was largely abolished by pre-incubation with 100 µM EGTA-AM (Figure 5G and Figure 5—figure supplement 1E), suggesting that it is a calcium- and release-type-dependent phenomenon. We quantified the correlation between event amplitude and distance to the AZ center using Pearson’s linear correlation algorithm. We observed a strong (0.98) and highly significant (p=0.015) correlation for synchronous release, while there was no significant correlation found for asynchronous release (p=0.92; Figure 5—figure supplement 1D), or in the presence of EGTA-AM (p=0.25; Figure 5—figure supplement 1E).

To support these observations, we used the spectral analysis of the traces, an approach that offers an advantage of being model-free as it does not rely on any fitting. We compared the average spectral composition of events occurring near the AZ center (0–100 nm ring) vs. events localized toward the AZ periphery (300–400 nm ring). In line with the above observations, synchronous events showed significant differences in spectral composition between the two distances, while asynchronous events did not (Figure 5—figure supplement 1F and G). Moreover, the major difference between the average spectral composition of synchronous and asynchronous event traces was in the frequency range of 0.5–4 Hz, while no differences were evident above ~5 Hz (Figure 5—figure supplement 1F and G). This implies the differences in the decay component in the range of hundreds of milliseconds to a few seconds, and a similarity in the fastest decay component, thus supporting the above results.

To understand the basis of this distance-dependent phenomenon and the differences between the two forms of release, we considered that the averaged peak amplitude of single fusion events could be influenced by several factors, including the effectiveness of endocytosis, the form of vesicle release, particularly the proportion of univesicular (UVR) and multivesicular (MVR) events (Leitz and Kavalali, 2011; Maschi and Klyachko, 2020), the diffusion of vesicular components, and differences in localization precision due to variable timing of vesicle fusion. To examine the first possibility, we recorded vesicle release events in the presence of a potent dynamin inhibitor dyngo-4a (50 µm). Application of dyngo-4a resulted in a markedly reduced number of detected events, precluding spatial analyses of this dataset. Nevertheless, we observed that dyngo-4a eliminated the differences in average event amplitude between synchronous and asynchronous release (Figure 5—figure supplement 1H), supporting the hypothesis that these amplitude differences are endocytosis-dependent. To further examine this possibility, we quantified the two components of event decay as a function of the distance to the AZ center in normal conditions. For synchronous events, we found an increase in the fast component of decay with the distance from the AZ center (Figure 5H, bottom), which closely paralleled the increase in the event amplitude (Figure 5F and Figure 5—figure supplement 1D), while the ultrafast component of decay remained unaltered across the AZ (Figure 5H, top). Notably, this distance dependence of the fast component of decay was eliminated by pre-incubation with EGTA-AM (Figure 5I), which parallels the effect of EGTA-AM on the event amplitude (Figure 5G and Figure 5—figure supplement 1E). In contrast, for asynchronous release events, both ultrafast and fast components of decay were homogeneous across the AZ and did not correlate with the distance to AZ center (Figure 5H). Moreover, as was the case with the event amplitude, both ultrafast and fast components of decay were no longer different between synchronous and asynchronous events in the presence of EGTA-AM (Figure 5I).

We next examined whether variable proportion of MVR/UVR contributes to the distance-dependent differences between the two forms of release. If the proportion of synchronous MVR events increases with distance from the AZ center, it can cause an apparent increase in the average synchronous event amplitude. If this is the case, then we predict that excluding MVR events from the analysis should reduce or eliminate the observed distance dependence of synchronous, but not asynchronous events. We examined this possibility by performing detection of MVR events, which were identified as events with a normalized amplitude larger than 2 (see ‘Materials and methods’; Maschi et al., 2021; Maschi and Klyachko, 2020), and excluding them from this analysis. In contrast with the above prediction, in the absence of MVR events, we still observed a distance-dependent increase in the event amplitude, and in the fast component of endocytosis, and this was the case for synchronous but not asynchronous release events (Figure 5—figure supplement 2C). This result indicates that the increase in the average synchronous event amplitude is not caused by the distance-dependent increase in the relative proportion of MVR.

A caveat in the above analysis comes from the fact that while smaller rings around the AZ center include events from most synapses, very distal rings include only events from the largest synapses, raising the possibility that part of the observed correlations could be an effect of the synapse size. To examine this possibility, we used instead the normalized distances to the AZ center. We obtained essentially the same results (Figure 5—figure supplement 2A and B) as those we observed with the actual distances, supporting that distance-dependent increase in synchronous event amplitude is not an effect of synapse size.

While amplitude variability and noisy nature of single events precluded the above analyses for individual events, we sought to confirm the distance-dependent differences between synchronous and asynchronous release at the level of individual boutons. For each bouton, we used the same concentric circle approach to average events detected within each distance band separately for synchronous and asynchronous events. The average event amplitude for each distance bin was then plotted as a function of distance to the AZ center separately for each bouton and fitted with a linear function (Figure 5—figure supplement 2D). We then quantified the percentage of boutons with a positive correlation between event amplitude and distance to the AZ center using a threshold of R² > ±0.1 to mitigate the effects of noise. We observed that for synchronous events 65% of boutons showed a positive correlation, which was further increased to 68% when only UVR events were included in the analysis (Figure 5J). In line with the population analyses above, the presence of EGTA-AM effectively eliminated this phenomenon, bringing down the number of boutons with a positive correlation to chance (48%) (Figure 5J). Also, similarly to the population analysis, for asynchronous events, the number of boutons with a positive correlation was no higher than chance (52%) (Figure 5J). These results support the above population analyses at the level of individual boutons, and specifically the notion that synchronous and asynchronous release events differ in their coupling with the fast calcium-dependent component of endocytosis.

We also considered an additional contributing factor that variability in the timing of synchronous and asynchronous events, which determines the number of photons collected, could result in different localization precision in different locales across the AZ, thus contributing to observed differences in amplitude. To examine this possibility, we determined the error of event localization as a function of distance and found that it had little variation between synchronous events near the AZ center vs. periphery (Figure 5—figure supplement 3A), and between synchronous and asynchronous events (Figure 1—figure supplement 1A), and thus cannot account for the observed differences in event amplitude.

Finally, we considered the potential contribution from diffusion of vesicular components upon fusion, which could be different at the AZ center vs. periphery. The average spatial profile of synchronous release events had a similar width near the AZ center vs. periphery (Figure 5—figure supplement 3B), arguing against spatial differences in diffusion across the AZ. This is consistent with the observation that asynchronous events do not have any measurable spatial differences in amplitude or decay kinetics and thus in the contribution from diffusion in different locations of the AZ, and diffusion presumably affects various forms of release similarly. In addition, we considered that the membrane diffusion coefficient decreases approximately tenfold with the decrease in temperature from 37°C to room temperature (Ries et al., 2009), while we observed no significant changes in the kinetics of ultrafast endocytosis (Figure 5—figure supplement 3F) and only modest changes in the fast calcium-dependent component of endocytosis (Q₁₀ ~ 1.3). Thus initial changes in the event spatial profile with decrease in temperature (if observed) can be attributed predominately to lateral diffusion. In contrast, we found that the event spatial profile was nearly the same at the two temperatures over the first three frames (150 ms) (Figure 5—figure supplement 3C–F), supporting the notion that diffusion does not play a major role in the observed differences in event amplitude or decay kinetics. Finally, photobleaching accounted only for ~3.3% of event decay during 1 s interval, and thus also cannot account for differences in event decay between the two forms of release.

Taken together, these observations suggest that while synchronous and asynchronous events generally utilize the same forms of retrieval, they differ in some aspects of exo-endocytosis coupling, particularly in the contribution of the fast calcium-dependent form of endocytosis.

In the above analyses, we defined asynchronous events based solely on temporal considerations. An alternative approach widely used previously to study asynchronous release relies on substitution of Ca²⁺ for Sr²⁺ (4 mM Sr²⁺ application in 0.5 mM Ca²⁺) (Atluri and Regehr, 1998; Goda and Stevens, 1994; Rumpel and Behrends, 1999; Xu-Friedman and Regehr, 1999). Sr²⁺ enhances asynchronous release approximately three- to fourfold due to its slower clearance rate and differential affinity to Syt1 in comparison to calcium (Atluri and Regehr, 1998; Goda and Stevens, 1994; Rumpel and Behrends, 1999; Xu-Friedman and Regehr, 1999; Dürst et al., 2022). Indeed, we found that Sr²⁺ application caused a significant reduction in synchronous release (p=0.0042, two-sample K-S test) and an increase in asynchronous release inside the AZ (p=0.028, two-sample K-S test; Figure 6—figure supplement 1A–C). This additional desynchronization in the presence of Sr²⁺ provides a useful tool to enhance asynchronous release and examine to what extent the features we identified above are also present in this larger population of asynchronous events.

We first examined the spatial organization of Sr²⁺-evoked asynchronous events. Specifically, we determined the proportion of asynchronous events released inside and outside the limits of the functionally defined AZ using the same approach and definitions as we did in Figure 1D. To avoid confusion, we also keep the same terminology by referring to the events detected in the first frame as Synchronous, while the events detected in the second frame as Asynchronous. In the presence of Sr²⁺, 76.5% of asynchronous events were located inside the AZ and 23.5% occurred ectopically, which is in the close agreement with the proportion we observed above in ‘normal’ control (2 mM Ca²⁺) conditions (73.3/26.7%, Figure 6A). In fact, we did not find statistical differences between the spatial distributions of asynchronous events in the two conditions, neither for normalized distances (Figure 6A) nor for the absolute distances (Figure 6C) (p=0.79, K-S test). Also, similarly to our earlier observations, in the presence of Sr²⁺ the subpopulation of asynchronous events inside the AZ was localized significantly closer to the AZ center than synchronous events in the same synapses (p=0.0067, K-S test; Figure 6B). The proportion of asynchronous events inside the AZ that utilize the same release sites as synchronous events was also similar to what we observed above in control conditions, with a modest increment (from ~25% to 31%, Figure 6D) and a small but significant reduction in distances to the release sites (p=0.0229, K-S test, Figure 6D). Taken together, these observations indicate a large degree of similarity in spatial organization between normal and Sr²⁺-evoked asynchronous events, including the presence of ~25% of ectopic events, the spatial bias of the events inside the AZ toward the center, and the limited overlap with synchronous events at the same release sites. We note that the presence of Sr²⁺ conveyed some changes to the spatial properties of ‘synchronous’ events (as defined by detection in first frame following stimulation), whose distribution was shifted in a complex way: it was similar to asynchronous events in normal conditions for shorter distances, but closer to synchronous events in normal conditions for longer distances. Thus ‘synchronous’ events display mixed synchronous/asynchronous-like spatial features in the presence of Sr²⁺, suggesting that these events constitute a mixture of proper synchronous and Sr²⁺-desynchronized events, with a variable degree of desynchronization that appears to correlate with the event distance to the AZ center.

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Next, we examined the effects of Sr²⁺ on the exo-endocytosis coupling. In contrast with the large differences in the decay kinetics between the two forms of release in control (normal) conditions, the average fluorescence traces for synchronous and asynchronous events were indistinguishable from each other in the presence of Sr²⁺ (Figure 6E), including the time course and amplitude of the fast endocytosis (Figure 6G). In fact, in the presence of Sr²⁺, the endocytosis kinetics of synchronous events became indistinguishable from asynchronous events in normal conditions (Figure 6G). Moreover, the distance-dependent increase in synchronous event amplitude and in the contribution of fast endocytosis was no longer observed in Sr²⁺ (Figure 6H). This was the case both for the average traces across population (Figure 6H) and for single boutons (Figure 6I), and regardless of whether MVR events were included or not (Figure 6I). In contrast, the average traces of asynchronous events were similar in the presence of Sr²⁺ to those in control conditions (Figure 6F). Also, similarly to control conditions, no distance dependence of decay kinetics was observed for asynchronous events in the presence of Sr²⁺ (Figure 6H).

Taken together, these findings provide further support for the spatiotemporal features of asynchronous release we observed earlier by showing that asynchronous release events evoked by Sr²⁺ and those we observed in normal conditions have very similar properties, including spatial organization, the presence of ectopic events, as well as release site utilization and decay kinetics. As expected from previous studies (Atluri and Regehr, 1998; Goda and Stevens, 1994; Rumpel and Behrends, 1999; Xu-Friedman and Regehr, 1999), the extensive desynchronization of release in the presence of Sr²⁺ results in a greatly increased proportion of asynchronous events in the first frame following stimulation, thus causing a shift in the perceived properties of ‘synchronous’ events (as defined in our study) towards the properties of asynchronous events.

Our results suggest that asynchronous release is not a homogeneous population simply distributed in time, but it contains at least two distinct subpopulations: one occurring inside the AZ and another occurring ectopically. This notion is supported by the opposing preferential localization of the two subpopulations, which cannot be explained by a single homogeneous population of events artificially divided by a specific definition of the AZ boundary in our measurements. Moreover, the ectopic and in-AZ events differ markedly in temporal properties since the ectopic events occur with significantly larger time intervals from synchronous events than the asynchronous events inside the AZ, thus further supporting the presence of two distinct subpopulations. The strong spatial bias toward the AZ center that we observed for the asynchronous release events inside the AZ is in a good agreement with the previous study using flash-freeze EM (Kusick et al., 2020; Li et al., 2021), while the subpopulation of ectopic events may have been overlooked in that study because a single time point used was likely insufficient to capture the much less frequent ectopic events. However, our results are also in agreement with the seemingly incompatible live imaging study of asynchronous events using SF-iGluSnFR (Mendonça et al., 2022) because we also observed that the combined population of all asynchronous events occurs farther away from the AZ center than synchronous events and thus occupy a larger release area, as measurements with SF-iGluSnFR reported (Mendonça et al., 2022). Our observation that there are two spatially distinct subpopulations of asynchronous release events thus reconciles the previous studies suggesting diametrically opposing organization of the asynchronous release at the AZ.

Although, to the best of our knowledge, ectopic asynchronous release has not been previously reported, there is extensive evidence for ectopic synchronous release occurring outside of the ultrastructurally defined AZ in several types of synapses, including cerebellar synapses (Matsui and Jahr, 2003; Matsui and Jahr, 2004; Matsui et al., 2005), ribbon-type synapses (Lenzi et al., 2002; Zenisek et al., 2000), and several glutamatergic and cholinergic sensory synapses (Balakrishnan et al., 2014; Balakrishnan et al., 2011; Coggan et al., 2005; Fu and Sretavan, 2012; Thyssen et al., 2010). Synchronous ectopic release was found to rely on a different proportions of voltage-gated Ca²⁺ channel (VGCC) subtypes than release within the AZ (Matsui and Jahr, 2004) and to exhibit different release probability and short-term plasticity (Dobson and Bellamy, 2015). Despite the differences in spatiotemporal organization, we found that ectopic asynchronous release events also share many similarities with the release events within the AZ, including event waveform, suggesting some similarity in the release machinery. Indeed, at the level of molecular organization, release sites are associated with the nanoclusters of SNARE proteins and docking machinery (Gramlich and Klyachko, 2019) and extensive evidence indicates that these nanoclusters are not limited to the AZ, but are also commonly present at extrasynaptic locations including the axons (Garcia et al., 1995; Sesack and Snyder, 1995; Hagiwara et al., 2005). Moreover, STED measurements showed that clusters of a SNARE protein Syntaxin-1A are found all over the synaptic membrane at the neuromuscular junctions, well beyond the boundaries of the AZ (Ribrault et al., 2011; Ullrich et al., 2015). Syntaxin-1A clusters are more abundant, stable, and larger in size inside the AZ in comparison to ectopic clusters (Ullrich et al., 2015). Syntaxin-1A co-clusters with the L-type VGCCs (Sajman et al., 2017), suggesting that the smaller outside clusters may serve as sites of ectopic release (Ullrich et al., 2015). Future studies combining functional measurements of individual vesicle release events will nanostructural measurements of synaptic docking and release machinery will be needed to determine the precise molecular determinants of ectopic release sites.

One of the major unresolved questions regarding the relative spatial arrangement of synchronous and asynchronous release is whether and to what extent the two forms of release have a spatial overlap at a nanoscale and utilize the same or distinct release sites. Flash-freeze EM studies suggested entirely distinct organization of the two forms of release with a preferential trans-synaptic alignment of asynchronous release events with a cluster of NMDA receptors near the AZ center, while synchronous events align with more peripherally located clusters of AMPA receptors (Kusick et al., 2020; Li et al., 2021). This preferential trans-synaptic alignment with the spatially distinct clusters of postsynaptic receptors suggests that different release sites are involved in supporting the two forms of release. In contrast, live imaging studies with SF-iGluSnFR observed ~50% overlap of the two forms of release at the same release sites, pointing to a large degree of overlap, and arguing against preferential alignment with two spatially segregated types of receptors (Mendonça et al., 2022). Our results again are compatible with and largely reconcile the two previous studies by showing that the two forms of release can overlap at the same release sites, but only in ~15–20% of the cases, at least within our limited observation time window.

There are two main constraints that affect how the number of release sites and spatial overlap of different forms of release is determined in ours and previous studies. First, the duration of observation likely contributes to the observed differences between the studies. By design, the flash-freeze EM studies were limited to observing a single event per synaptic bouton (Kusick et al., 2020; Li et al., 2021), and thus the overlap of synchronous and asynchronous release events could only be inferred indirectly from distributions across different boutons. A live imaging study with the SF-iGluSnFR compared the two populations within the same bouton, but had another caveat in having an extensive period of observation lasting several minutes (Mendonça et al., 2022). We previously found that analyses of release site utilization in our culture conditions, which are similar to the above study (Mendonça et al., 2022), must be limited to ~120–150 s by the random natural displacement of synapses in culture, which has a rate of ~20–25 nm/min (Maschi and Klyachko, 2017), and cannot be accounted for as it varies from one bouton to another. As a result, longer recordings cause a progressively increasing blur in the definition of release sites based on event clustering, effectively broadening the release site dimensions and thus overestimating the spatial overlap between the two forms of release. Second, the diameter of the cluster used in hierarchical clustering algorithms to define the release sites is also critical in determining the spatial degree of overlap between different forms of release. The cluster diameter used in our studies is derived independently from any biological considerations by calculating the inconsistency coefficient, as required by the algorithm (Wang et al., 2016), giving the value for the natural cluster diameter in our data of ~50 nm (Maschi and Klyachko, 2017). This value is also supported by the estimates for the number of release sites per bouton we obtained using 50 nm clusters, which is in a good agreement with the estimates produced by an entirely different approach using quantal analysis of glutamate transients (Sakamoto et al., 2018). The localization precision reported for SF-iGluSnFR of ~75 nm (Mendonça et al., 2022) does not permit event clustering with effective diameter smaller than 150 nm. Given the average AZ dimensions of only ~250 nm (Ackermann et al., 2015), the cluster diameter of 150 nm would encompass a large proportion of the AZ, thus likely overestimating the degree of overlap between the two forms of release. Thus within the constraints of the limited observation period, our results reconcile the two previous studies, suggesting that synchronous and asynchronous events can indeed overlap at the same release sites, but to a large extent are spatially segregated.

A surprising observation that further distinguishes synchronous and asynchronous release events is the difference in the average event amplitude. This difference arises from a systematic increase in the synchronous event amplitude with the distance from the AZ center, while the amplitude of asynchronous events remained uniform throughout the AZ in the same boutons. Our analyses indicate that this is not an artifact, which can simply arise from a different duration of acquisition for synchronous vs. asynchronous events, because this phenomenon is not observed for synchronous and asynchronous events near the AZ center. Moreover, this distance-dependent phenomenon was eliminated by buffering intra-terminal calcium with EGTA and was no longer observed when Ca²⁺ was substituted for Sr²⁺, suggesting that it is caused by a calcium-dependent mechanism that differs between synchronous and asynchronous forms of release. To understand the possible causes of this phenomenon, we considered that the average amplitude of single release events is determined by several factors: the amount of fluorophore per vesicle, the relative contribution of MVR, the kinetics of lateral diffusion of vesicle components in the plasma membrane, the timing of fusion events, and the efficiency of endocytosis. We can exclude the first factor for several reasons: it is highly unlikely that vesicles within the same bouton have a systematically different amount of pHluorin that scales with distance to the AZ center, and in a calcium-dependent manner. Furthermore, it is also highly unlikely that vesicles undergoing synchronous release would have systematically larger pHluorin load than those released asynchronously. We also considered the possibility that the differential amount of MVR among synchronous and asynchronous events, and/or a spatial gradient of MVR from AZ center to periphery could contribute to observed differences in the event amplitude between the two forms of release. However, we found that excluding MVR events made the spatial gradient and the differences between the two forms of release larger, rather than eliminated them. In consideration of the third possibility, we found that the contribution from lateral diffusion of vesicular components to apparent event decay does not differ between the AZ center and its periphery. We also note that the differences in lateral diffusion between the AZ center and periphery are highly unlikely to explain this phenomenon because a less dense membrane environment at the periphery of the AZ (Gramlich and Klyachko, 2019; Südhof, 2012) would be expected to allow for more efficient lateral diffusion and decay of the fluorescence signal, while the opposite is observed. Moreover, the two forms of release have different amplitudes at the same distance from the AZ center, where the contribution from diffusion is presumably similar. Finally, differences in the timing of vesicle fusion, which determines the amount of photons collected, could contribute to the observed differences in amplitude. In addition to a variable delay of asynchronous events comparing to synchronous ones, difference in the event timing could arise, for example, from different distance to the calcium source at different locales of the AZ. If this is the case, the increase in synchronous event amplitude with distance from the AZ center would imply systematically earlier vesicle fusion and closer distance to the calcium source at the AZ periphery. While we cannot directly exclude this possibility, we previously observed that release sites near the AZ center have several fold higher release probability and are affected stronger by EGTA than the release sites near the AZ periphery (Maschi and Klyachko, 2017). Central release sites are thus presumably closer to the calcium sources, which is opposite in direction of changes from the distance-dependent effect we observed here. Furthermore, we observed no measurable differences in amplitude between synchronous and asynchronous events near the AZ center, suggesting that the variability in event timing, while present, is not the principal determinant of the event amplitude in our measurements. Finally, the error of event localization, which reflects the number of photons collected, had little variation between synchronous vs. asynchronous events and between events at the AZ center vs. the periphery, further arguing against the critical role of event timing in this phenomenon. Thus the most likely remaining explanation is differential exo-endocytosis coupling or endocytosis kinetics between the two forms of release. This is also supported by the observed differences in the decay kinetics of synchronous and asynchronous events, and by the observation that the difference in the average event amplitude between the two forms of release was eliminated by acute inhibition of dynamin.

Previous analyses of single-vesicle release events have demonstrated that synchronous release can be coupled with several kinetically and mechanistically distinct forms of endocytosis (Zhang et al., 2013). Whether different forms of release, that is, synchronous and asynchronous, are coupled with the same or different forms of endocytosis has not been explored. Our analyses showed that both synchronous and asynchronous events decay with two clearly distinguishable kinetic components: one with a time constant ~60 ms and calcium-independent, and another one with a timescale of about a second and calcium-dependent. These two decay components closely correspond in both kinetics and calcium sensitivity to the previously identified ultrafast endocytosis and fast endocytosis, respectively (Chanaday and Kavalali, 2018; Watanabe et al., 2013; Zhang et al., 2013). Our results suggest that while the two forms of release generally utilize the same forms of retrieval, there are differences in some aspects of their exo-endocytosis coupling. The role of endocytosis in the observed differences is also consistent with the effects of EGTA, whose action on the fast component of endocytosis parallels its action on the synchronous event amplitude. This observation is in line with recent studies suggesting that calcium influx may activate calmodulin and synaptotagmin to initiate endocytosis and control endocytosis kinetics (Wu et al., 2009). Indeed, increasing calcium influx during APs accelerates endocytosis at hippocampal synapses (Balaji et al., 2008; Sankaranarayanan and Ryan, 2001), while buffering intra-terminal calcium elevation with EGTA slows down fast endocytosis at bipolar nerve terminals and in the calyx of Held synapses (Neves et al., 2001; Wu et al., 2005). Another possible mechanism is differential distribution or mobility of SNARE proteins across the AZ since the SNARE proteins have been suggested to control the exo-endocytosis coupling (Wu et al., 2014; Zhang et al., 2013), and a large variability in cluster size and mobility of SNARE proteins has been found in different locales of the AZ (Ribrault et al., 2011; Ullrich et al., 2015). Future studies will be needed to define the complex mechanisms of exo-/endocytosis coupling and their interrelationship with the two forms of release. We note that while we did not observe differences in the ultrafast component of endocytosis between the two forms of release, the limited temporal resolution of our recordings and/or temporal limitations imposed by the speed of reacidification and quenching of the fluorescence probe may have prevented an observable difference in kinetics.

Nevertheless, our results uncover a previously unrecognized complexity in spatial and temporal organization of asynchronous release in central synapses, whose distinctive features and dynamic balance with the synchronous release may play important roles in synaptic computations.

Neuronal cultures were produced from the hippocampus of rat pups of mixed gender as previously described (Murthy and Stevens, 1999; Peng et al., 2012). Briefly, hippocampi were dissected from E16-17 pups, dissociated by papain digestion, and plated on glass coverslips containing an astrocyte monolayer. Neurons were cultured in Neurobasal media supplemented with B-27 supplement. All animal procedures conformed to the guidelines approved by the Washington University Animal Studies Committee.

VGluT1-pHluorin was generously provided by Drs. Robert Edwards and Susan Voglmaier (UCSF) (Voglmaier et al., 2006; Silm et al., 2019). SF-iGluSnFR(A184) was kindly made available by Dr. Loren Looger (Addgene viral prep #106174-AAV1) (Marvin et al., 2018). Viral vectors were generated by the Viral Vectors Core at Washington University or obtained from Addgene. Hippocampal neuronal cultures were infected at DIV3 as previously described (Maschi and Klyachko, 2017) and experiments were performed at DIV16–19.

Fluorescence was excited with a 475 nm LED (Olympus) and monitored using an inverted microscope (IX83, Olympus) equipped with a ×150 1.45 NA oil-immersion objective. A continuous acquisition was performed at 50 ms/frame for 120 s using a cooled EMCCD camera (iXon life 888, ANDOR). The Z-drift compensation system (IX3-ZDC, Olympus) was used to ensure a constant position of the focal plane during imaging. All experiments were conducted at 37°C within a whole-microscope incubator chamber (TOKAI HIT). Field simulation was performed at 1 Hz precisely synchronized with the beginning of an acquisition frame using a pair of platinum electrodes and controlled by the software via Master-9 stimulus generator (A.M.P.I.). Samples were perfused with bath solution containing 125 mM NaCl, 2.5 mM KCl, 2 mM CaCl₂, 1 mM MgCl₂, 10 mM HEPES, 15 mM glucose, 50 μM APV, 10 μM CNQX, adjusted to pH 7.4.

Fluorescence was excited with a 488 laser (Cell CMR-LAS-488, Olympus) and monitored using an inverted TIRF-equipped microscope (IX83, Olympus) under a ×150/1.45NA objective. Near-TIRF was achieved by adjusting the incident angle to 63.7°, which is near the critical angle of 63.63°. Images were acquired every 50 ms (with an exposure time of 49.38 ms) using a cooled EMCCD camera (iXon life 888, ANDOR). In experiments in Figure 1H, I, acquisition was performed at a rate of 25 ms/frame. Other experimental details, including solutions, field stimulation, etc., were the same as above.

Statistical analyses were performed in MATLAB. Statistical significance was determined using a two-sample two-tailed t-test, Tukey–Kramer ANOVA, Kolmogorov–Smirnov (K-S), or Kruskal–Wallis tests where appropriate. Statistical tests used to measure significance, the corresponding significance level (p-value), and the values of n are provided in Supplementary file 1. Data are reported as mean ± SEM, and p<0.05 was considered statistically significant.

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

This work was supported in part by the R35 grant to VAK from NINDS and postdoctoral fellowship from the McDonnell Center for Molecular Neuroscience at Washington University to GM.

1. Received: October 8, 2022
2. Preprint posted: October 19, 2022 (view preprint)
3. Accepted: April 24, 2023
4. Version of Record published: May 11, 2023 (version 1)

© 2023, Malagon, Myeong et al.

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