Squidpy: a scalable framework for spatial single cell analysis
Posted on 2021-02-19 - 08:53 authored by Giovanni Palla
Various public datasets of spatial transcriptomics/proteomics data, from the manuscript [TO ADD]
Refer to the manuscript and single files for original dataset publication and pre-processing. Notebooks where the data was used can be found at the following repo:
https://github.com/theislab/squidpy_reproducibility
https://github.com/theislab/squidpy_notebooks
https://github.com/theislab/squidpy
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Palla, Giovanni; Spitzer, Hannah; Theis, Fabian; Schaar, Anna Christina; Rybakov, Sergei; Klein, Michal; et al. (2021). Squidpy: a scalable framework for spatial single cell analysis. figshare. Collection. https://doi.org/10.6084/m9.figshare.c.5273297.v1
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AUTHORS (12)
FT
Fabian Theis
AS
Anna Christina Schaar
SR
Sergei Rybakov
MK
Michal Klein
LK
Louis Kuemmerle
DF
David Fischer
II
Ignacio L. Ibarra
ML
Mohammad Lotfollahi
IV
Isaac Virshup
OH
Olle Holmberg