GAS_query_db.tar.bz2 (57.47 MB)
Streptococcus pyogenes PopPUNK database
Version 3 2019-08-24, 13:56
Version 2 2018-12-18, 20:46
Version 1 2018-08-03, 17:13
dataset
posted on 2018-12-18, 20:46 authored by John LeesJohn Lees, LIAM MCINTYRE, MARK DAVIESMARK DAVIESDatabase for assigning cluster ID to new S. pyogenes isolates.
First extract:
tar xf GAS_query_db.tar.bz2
Then assign new genomes:
poppunk --assign-query --ref-db GAS_query --distances GAS_query/GAS_query.dists --model-dir GAS_query --q-files query.list --output GAS_assignment --threads 8
Where query.list is a list of the assemblies to assign
