cell_features.zip (645.57 MB)
CAMPA-derived cellular features
dataset
posted on 2022-05-06, 13:20 authored by Hannah SpitzerHannah Spitzer, Scott BerryScott BerryCellular features of the entire 4i dataset introduced in the CAMPA manuscript, extracted using the CAMPA workflow.
Extracted features are intensity per CSL (consistent subcellular landmark, identified using CAMPA), object statistics (count and size of individual CSL-components per cell) and pairwise co-occurrence scores:
- intensity: one csv file named `intensity_features_annotation.csv` is provided, containing mean intensity per CSL and size features
- co-occurrence scores: one file per cluster-cluster pair named `co_occ_{cluster1}_{cluster2}_features_annotation.csv` is provided, containing co-occurrence scores at all distance intervals.
- per object stats: one csv file named `object_stats_features_annotation.csv` is stored, containing object stats.