PXD017260

PXD017260 is an original dataset announced via ProteomeXchange.

Title	Deciphering the immunogenic potential of wheat flour: A reference map of the salt-soluble proteome from the U.S. wheat Butte 86
Description	Within the complex wheat flour proteome, the gluten proteins have attracted most of the attention because of their importance in determining the functional properties of wheat flour doughs and their roles in human health conditions such as celiac disease and food allergies. However, certain non-gluten proteins also trigger immunological responses but may be present in flour in low amounts or obscured by the more abundant gluten proteins in two-dimensional gels of total protein preparations. Non-gluten proteins were preferentially extracted from the flour with a dilute salt solution and separated by two-dimensional gel electrophoresis. Proteins in 172 gel spots were identified by tandem mass spectrometry after cleavage with trypsin or chymotrypsin. Fifty-seven different types of non-gluten proteins were identified, including 14 types that are known or suspected immunogenic proteins. The predominant proteins in 18 gel spots were gluten proteins. Transgenic wheat lines in which specific groups of gluten proteins were suppressed by RNA interference were used to estimate the amount of carry-over of gluten proteins in the salt-soluble protein fraction. Analysis of salt-soluble proteins from a transgenic line missing omega-1,2 gliadins demonstrated that certain omega-1,2 gliadins were present in large amounts in the salt-soluble fraction and obscured relatively small amounts of beta-amylase and protein disulfide isomerase. In comparison, analysis of a transgenic line in which alpha gliadins were absent revealed that glyceraldehyde-3 phosphate dehydrogenase was a moderately abundant protein that co-migrated with several alpha gliadins. The proteomic map of the non-gluten protein fraction of wheat flour developed in this study complements a proteomic map of the total flour proteins developed previously for the same cultivar. Knowing the identities of low abundance proteins in the flour as well as proteins that are hidden by some of the major gluten proteins on two-dimensional gels is critical for studies aimed at assessing the immunogenic potential of wheat flour and determining how the growth conditions of the plants affect the levels of specific immunogenic proteins in the flour.
HostingRepository	PRIDE
AnnounceDate	2020-08-17
AnnouncementXML	Submission_2020-08-16_22:09:47.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD017260
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Annamaria Simon-Buss
SpeciesList	scientific name: Triticum aestivum (Wheat); NCBI TaxID: 4565;
ModificationList	Trp->Asp; Asn->Arg; Trp->Pro; Ser->Arg; Cys->Gln; Thr->Ser; Lys->Thr; Gln->Phe; Arg->Tyr; Arg->Thr; Thr->Xle; Phe->Cys; Gln->Val; Asp->Ala; Val->Glu; Ser->Asn; Pro->Gln; Xle->Met; Ala->Glu; Tyr->Gly; His->Cys; Cys->Xle; Asn->Glu; Gln->His; Gln->Cys; Phe->Gly; Gly->Gln; Pro->Cys; Thr->His; Arg->Met; Glu->Thr; Xle->Cys; Pro->Ala; Val->Asn; Gly->Thr; His->Phe; Gln->Trp; Val->Arg; Asn->Cys; Oxidation; Gly->Xle; Tyr->Met; Xle->Glu; Tyr->Thr; iodoacetamide derivatized residue; Ala->Xle; Gly->Ala; Pro->Xle; Pro->Ser; Phe->Ala; His->Glu; Met->Gly; Glu->Trp; Deoxy; Asp->Cys; Gly->Met; Formyl; Xle->Pro; Ala->Gln; Arg->Glu; Cys->Met; Asp->Lys; Asn->Tyr; Pro->Asn; Gln->Arg; Lys->Tyr; Arg->Gln; Cys->Trp; Lys->Gly; Cys->Phe; Gln->Thr; Phe->His; Val->Ser; acetylated residue; Xle->Tyr; Lys->Asp; His->Gln; Arg->Gly; Pro->Asp; Phe->Asp; Val->Phe; Ala->Ser; Thr->Asn; Acetyl; Xle->Ser; Pro->His; Xle->Trp; Gly->Pro; Asp->Val; Carboxymethyl; Thr->Met; Ala->Pro; Ser->Phe; Carbamidomethyl; Asn->Gln; Asn->Gly; Val->Tyr; Pro->Phe; Arg->Trp; Glu->pyro-Glu; Pro->Lys; Phe->Xle; Glu->Ser; Thr->Gln; Ala->Gly; Lys->Phe; Ser->Cys; Cys->Asp; Glu->Cys; Asp->Met; Asp->His; Xle->Gly; Gly->Asn; deamidated residue; Xle->Gln; Met->Val; Trp->Glu; Thr->Tyr; Gln->Tyr; Arg->Ser; Val->Met; Gln->Xle; Ala->Trp; Asn->Ser; Arg->Pro; Thr->Ala; Glu->Arg; Asp->Phe; Trp->Tyr; Val->Ala; Gln->Gly; Delta:H(4)C(2)O(-1)S(1); Xle->Arg; Gln->Pro; Deamidated; Asn->Met; Xle->Ala; Lys->Arg; Met->Asn; Ala->Thr; Pro->Met; Lys->Cys; Trp->Gly; Cys->Val; Val->Gln; Thr->Lys; Gln->pyro-Glu; Asp->Thr; Ala->Lys; Ala->Cys; monohydroxylated residue; Ser->His; Arg->Phe; Ammonia-loss; Gln->Ser; Trp->Gln; Xle->His; Tyr->Phe; Ala->Arg; Ala->Asp; Cys->Gly; Tyr->His; Met->Thr; Glu->Ala; Lys->Asn; Ser->Pro; Thr->Asp; Lys->Xle; Arg->Asp; Gly->Phe; Val->Asp; Glu->Phe; Asn->Pro; His->Trp; Ala->Asn; Glu->Gly; Cys->Glu; Met->Tyr; Lys->Ser; Asp->Pro; Asp->Tyr; Gln->Ala; Glu->Xle; Gly->Val; Val->His; Ser->Tyr; Ser->Xle; Lys->Trp; Cys->Ser; Asp->Trp; Gly->His; Asn->Lys; Gly->Tyr; Phe->Glu; Ala->Val; Arg->Asn; His->Lys; Ser->Trp; Glu->Tyr; Trp->Ala; Ala->Met; Xle->Phe; Gly->Cys; Arg->Lys; Glu->His; Cys->Ala; Asp->Ser; Trp->Phe; Methyl; Trp->Met; Tyr->Val; Phe->Val; Ser->Val; Cys->Pro; Trp->Thr; Glu->Asp; Gly->Ser; Arg->Val; Cys->Asn; Val->Xle; Asn->His; Xle->Lys; Thr->Phe; Arg->His; Asn->Phe; Xle->Val; Ala->His; Arg->Ala; Ser->Gly; Asn->Thr; Gln->Asn; Dehydrated; Dioxidation; Gly->Glu
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2020-01-23 03:46:34	ID requested
⏵ 1	2020-08-16 22:09:47	announced

Altenbach SB, Chang HC, Simon-Buss A, Deciphering the immunogenic potential of wheat flour: a reference map of the salt-soluble proteome from the U.S. wheat Butte 86. Proteome Sci, 18():8(2020) [pubmed]

ProteomeXchange project tag: Biology/Disease-Driven Human Proteome Project (B/D-HPP)

submitter keyword: albumins/globulins, allergens, celiac disease, non-celiac wheat sensitivity, wheat flour proteome, LC-MS/MS

dr. Susan B. Altenbach
contact affiliation	Western Regional Research Center, United States Department of Agriculture - Agricultural Research Service, Albany, CA, United States,
contact email	susan.altenbach@ars.usda.gov
lab head
Annamaria Simon-Buss
contact affiliation	Hamburg School of Food Science, Hamburg University
contact email	anna.simon-buss@chemie.uni-hamburg.de
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD017260
     1. Label: PRIDE project
     2. Name: Deciphering the immunogenic potential of wheat flour: A reference map of the salt-soluble proteome from the U.S. wheat Butte 86