Microbial Biomass in Batch and Continuous System

Microorganism is a microscopic organism, commonly used term to describe a cell or more, including viruses [1]. This definition includes all prokaryotes, as the eukaryotic unicellular: protozoa, algae and fungi. Bacteria are an extremely diverse group of organisms with extensive variation of morphological, ecological and physiological, which due to their diversity, are regularly found in heterogeneous communities [2].


Introduction
Microorganism is a microscopic organism, commonly used term to describe a cell or more, including viruses [1]. This definition includes all prokaryotes, as the eukaryotic unicellular: protozoa, algae and fungi. Bacteria are an extremely diverse group of organisms with extensive variation of morphological, ecological and physiological, which due to their diversity, are regularly found in heterogeneous communities [2].
The microorganisms are widely used in the biological treatment of waste solids and liquids [3]. Importantly, the microorganisms used in biological treatments as a partnership a community or consortium [2].
Nowadays there is a current increasingly important in the sense of using microorganisms, especially bacteria, algae and fungi, for decontamination and to help recovery from natural environments and for treating municipal or industrial effluents. It is estimated that the best microorganisms for the removal of toxins present in a place, are initially isolated in their own area where they have been naturally selected, although in a second genetic manipulation of these can significantly strengthen the capacity of microorganisms culture collections and isolates from the different environments of interest. This is supported by the observation that microorganisms capable of living in a polluted environment, and thus perform vital functions, in cellular metabolism have highly effective devices for decontamination. To know the details of these mechanisms could be exploited to purify the water, such as using bacteria capable of capturing heavy metals on their cell wall [4].
Thus, this rapid advance of science and technological development has allowed decontamination using microorganisms in the water. Using the metabolism of microorganisms has enabled the construction of biological reactors at much lower cost than physicochemical, and also the construction of treatment plants mixed system for greater efficiency [5]. Developed countries currently use these biomining processes through the involvement of bacteria such as Acidithiobacillus ferrooxidans.
Some species of Klebsiella and Pseudomonas are capable of degradation of reactive pollutants. It also recognizes the ability of some microorganisms or their enzymes to degrade under certain conditions to cyanide reagent, employed in the leaching of gold and silver recovery [6]. Several studies have shown that the biomass of different species of bacteria, fungi and algae are capable of concentrating metal ions in their structures that are found in aquatic environments [7].
Bioremediation is defined as a natural process, during in which different microorganisms are capable of removing organic and inorganic contaminants in a given environment [8]. In the bioremediation process, there are different objectives to assess; mainly seeks to avoid a long term noxious effects to other organisms as well as natural resources; it seeks to recover the ecological balance that exists in the environment; and finally, it seeks to achieve that the contaminated area, with a subsequent treatment by biological processes, can be reused for recreation or productive purposes [9].
Different types of biological treatment systems are used in the field of environmental engineering. The biochemical reactions leading to the oxidation of organic matter are conducted in reactors that can be classified as aerobic or anaerobic, suspended growth or biofilm, with mechanical or without mechanical mixing, etc. In order to design an appropriate reactor for a given wastewater treatment system, both the microbial kinetics of substrate removal and the fundamental properties of different reactors have to be understood [10].
The use of microorganisms as tools of decontamination is fairly recent. The biggest advances in the field were made after the oil spill of the Exxon Valdez on the coast of Prince William, in Alaska (1990). Since this ecological disaster lot of oil left in the water, sought alternative ways of dealing with pollution.
The scientists who developed the first successful experiences of bioremediation of oil a large scale in Alaska, were based on the premise that all natural ecosystems have organisms capable of metabolizing toxic compounds and xenobiotics, although these are often found in proportions less than 1% microbial community. This premise was fulfilled in Alaska and in almost all cases studied later [5].
Several studies have shown that the biomass of different species of bacteria, fungi and algae are capable of concentrating metal ions in their structures that are found in aquatic environments [7]. Bacteria as the genus Pseudomonas of mining environments have been identified that are resistant to heavy metals such as cadmium (Cd), copper (Cu) and lead (Pb) [11]. Some species of marine microalgae, Staphylococcus saprophyticus and fungi have been reported the biosorption of cadmium, chromium, lead and copper from wastewater [7,12,13].
In other studies it is known that microbial strains are able to bioremediate contaminated soils with different metals and organic compounds. It is known that Escherichia coli is able to bioaccumulate cadmium concentrations of 5 mg/L as well as copper and zinc which are taken from the culture medium by a process in which occurs a binding peptides secreted by the bacteria [14]. Other studies reported bacterial consortia isolated from mining effluents that adsorbed copper [15], as well as anaerobic consortia that in continuous system showed high percentages of copper and iron removal [16,17].
It is well-known that the use of the water drainage basins are the primary sources for anthropogenic unloads; it represents a risk for the human health, particularly the pollution caused by the high concentrations of some heavy metals, such as, zinc (Zn), nickel (Ni), chromium (Cr), lead (Pb) and copper (Cu) [18,19,20]. Those metals go through the aquatic environment principally by direct loads of industrial sources, soils and sediments and are distributed in the water, biota, being the mining industry one of the most important source [21,22,23]. An example of contamination by heavy metals in water and sediment, it is the San Pedro River basin, one of the most important rivers of the north of Sonora, Mexico. This river has been severely contaminated by the wastewater discharges with high concentration of copper generated during the mining activity of the region. In addition, wastewaters discharges untreated raw sewage coming from the city of Cananea, Sonora [24]; also contribute with the pollution of this source of water. Considering the importance and impact of this problem on the community of Cananea city, different kinds of researches had been developing. In reports the sampling stations in the San Pedro River and the propagation and isolation of the bacteria and the copper biosorption in an aerobic bioreactor. However, it is necessary to make more studies that allow suggesting other alternatives for the treatment of acid mine drainages (AMD), and consequently, reducing the concentration of the heavy metals in the San Pedro River, until acceptable levels according to Mexican regulations (NOM-001])[15).

Anaerobic processes
Opposite to the aerobic are anaerobic processes, which are performed in the absence of oxygen by groups of heterotrophic bacteria, which in a process of liquefaction/gasification in two stages, becomes a 90% organic matter present at first in intermediate (partially finished products stabilized that include organic acids and alcohols) and then to methane and gaseous carbon dioxide: The process is applied universally in hot anaerobic digesters, where in the primary and biological sludge is maintained for about 30 days at 35 ºC to reduce its volume (about 30%) and their ability to putrefaction, there by simplifies the removal of sludge. The advantage of this type of digestion is that generates energy in the form of methane and the production of sludge is only 10% [5,25].

Anaerobic treatment
Anaerobic treatment processes require the presence of a diverse closely dependent group of bacteria to bring about the complete conversion of complex mixtures of substrates to methane gas. It is puzzling that single species of bacteria have not evolved to convert at least simple substrates such as carbohydrates, amino acids, or fatty acids all the way to methane [26].
Conventional phase and high-rate two-phase anaerobic digestion processes have frequently been employed in order to treat both soluble and solid types of domestic and industrial wastes. The most significant outcome of anaerobic digestion processes is that they generate energy in the form of biogas namely, methane and hydrogen. Therefore, due to current imperative environmental issues such as global warming, ozone depletion, and formation of acid rain, substitution of renewable energy sources produced from biomass, such as methane and hydrogen, produced through anaerobic digestion processes will definitely affect the demand and consumption of fossil-fuel derived energy [27].
The anaerobic treatment is a biological process widely used in treating wastewater. When these have a high organic load, presents itself as the only alternative would be an expensive aerobic treatment, due to the oxygen supply. The anaerobic treatment is characterized by the production of "biogas" consisting mainly of methane (60-80%) and carbon dioxide (40-20%) and capable of being used as fuel for generating thermal energy and / or electric. Furthermore, only a small fraction of COD treated (5-10%) is used to form new bacteria, compared to 50-70% of an aerobic process. However, the slow anaerobic process requires working with high residence times, so it is necessary to design reactors or digesters with a high concentration of microorganisms [28,29]. Actually is a complex process involving several groups of bacteria, both strictly anaerobic and facultative, which, through a series of stages and in the absence of oxygen, flows mainly in the formation of methane and carbon dioxide. Each stage of the process, described below, is carried out by different groups of bacteria, which must be in perfect balanced. Figure 1 shows a schematic representation of the main conversion processes in anaerobic digestion, suggested by Gujer [30].
(1) Hydrolysis. In this process complex particulate matter is converted into dissolved compounds with a lower molecular weight. The process requires the mediation of exoenzymes that are excreted by fermentative bacteria. Proteins are degraded via (poly) peptides to amino acids, carbohydrates are transformed into soluble sugars (mono and disaccharides) and lipids are converted to long chain fatty acids and glycerine. In practice, the hydrolysis rate can be limiting for the overall rate of anaerobic digestion. In particular the conversion rate of lipids becomes very low below 18°C.
(2) Acidogenesis. Dissolved compounds, generated in the hydrolysing step, are taken up in the cells of fermentative bacteria and after acidogenesis excreted as simple organic compounds like volatile fatty acids (VFA), alcohols and mineral compounds like CO2, H2, NH3, H2S, etc. Acidogenic fermentation is carried out by a diverse group of bacteria, most of which are obligate anaerobe. However, some are facultative and can also metabolize organic matter via the oxidative pathway. This is important in anaerobic wastewater treatment, since dissolved oxygen (DO) otherwise might become toxic for obligate anaerobic organisms, such as methanogens [31].
(3) Acetogenesis. The products of acidogenesis are converted into the final precursors for methane generation: acetate, hydrogen and carbon dioxide. As indicated in Figure 1, a fraction of approximately 70% of the COD originally present in the influent is converted into acetic acid and the remainder of the electron donor capacity is concentrated in the formed hydrogen. Naturally the generation of highly reduced material like hydrogen must be accompanied by production of oxidized material like CO2.
(4) Methanogenesis. Methanogenesis may be the rate liminting step in the overall digestion process, especially at high temperatures (> 18°C) and when the organic material in the influent is mainly soluble and little hydrolysis is required. Methane is produced from acetate or from the reduction of carbon dioxide by hydrogen using acetotrophic and hydrogenotrophic bacteria, respectively: Different from aerobic treatment where the bacterial mass was modeled as a single bacterial suspension, anaerobic treatment of complex wastewaters, with particulate matter in the influent, is only feasible by the action of a consortium of the four mentioned groups of bacteria that each have their own kinetics and yield coefficients. The bacteria that produce methane from hydrogen and carbon dioxide grow faster than those utilizing acetate that the acetotrophic methanogens usually are rate limiting for the transformation of acidified wastewaters to biogas [32].
The different groups of bacteria involved in the conversion of influent organic matter all exert anabolic and catabolic activity. Hence, parallel to the release of the different fermentation products, new biomass is formed associated with the four conversion processes described above. For convenience, the first three processes often are lumped together and denominated acid fermentation, while the fourth step is referred to as methanogenic fermentation.
The removal of organic matter-COD during the acid fermentation is limited to the release of hydrogen only 30% of the organic matter is converted into methane via the hydrogenotrophic pathway. Hence, a necessary condition for efficient organic matter removal in an anaerobic treatment system is that a sufficient mass of acetotrophic methanogens develops. Acid fermentation tends to cause a decrease in the pH because of the production of VFA and other intermediates that dissociate and produce protons. As methanogenesis will only develop well at a neutral pH values, instability may arise, if for some reason the rate of acid removal by methane production falls behind the acid production rate: the net production of acid will tend to cause a decrease in pH, and thus may reduce the methanogenic activity further. In practice, this so called "souring" of the anaerobic reactor contents is the most common cause for operational failure of anaerobic treatment systems. The danger of souring can be avoided, by maintaining the proper balance between acid and methanogenic fermentation which in fact means that both the methanogenic digestion capacity and buffer capacity of the system should be sufficiently high [29,33].

Chemical oxygen demand (COD)
Natural organic detritus and organic waste from wastewater treatment plants, failing septic systems, and agricultural and urban runoff, acts as a food source for water-borne bacteria. Bacteria decompose these organic materials using dissolved oxygen. The determination of Chemical Oxygen Demand (COD) is widely used in municipal and industrial laboratories to measure the overall level of organic contamination in wastewater. The contamination level is determined by measuring the equivalent amount of oxygen required to oxidize organic matter in the sample.
In the COD method, the water sample is oxidized by digesting in a sealed reaction tube with sulphuric acid and potassium dichromate in the presence of a silver sulphate catalyst. The amount of dichromate reduced is proportional to the COD. A reagent blank is prepared for each batch of tubes in order to compensate for the oxygen demand of the reagent itself.
Over the range of the test a series of colors from yellow through green to blue are produced.
The color is indicative of the chemical oxygen demand and is measured using a photometer. The results are expressed as milligrams of oxygen consumed per liter of sample [34]. To the flask, add approximately 500 mL of water and mix the contents to dissolve. Then add 33.3 g de HgSO4 to the potassium solution. Add in an ice bath slowly 167 mL pure H2SO4. When the mixture has cooled, stir the mixture until the solid dissolves and dilute to one liter. ii. Silver sulphate in sulphuric acid (10 g). To a glass bottle, add 10.0 ± 0.1 g of silver sulphate and 1000 ± 10 mL of sulphuric acid and stopper. To obtain a satisfactory solution, swirl the initial mixture and allow it to stand overnight. Swirl the contents again until all the silver sulphate dissolves. This solution may be stored in the dark at room temperature for up to an indefinite period. iii. Pipette 2.0 mL sample into cuvette with 2.0 mL of the mixed reagent solution and 1.0 mL of the silver sulphate in sulphuric acid solution. Invert cuvettes carefully. iv. Heating reactor for determination of COD for about 30 minutes. v. Heat cuvettes for 2 h at 150 °C. vi. read cuvettes in the spectrophotometer at 620 nm.

Technique to determine alkalinity
Typical control strategy in methanogenic anaerobic reactors is to maintain a relatively low concentration of volatile fatty acids (VFA) and a pH range of 6.6 < pH < 7.4. Normally in such reactors the carbonate system forms the main weak-acid system responsible for maintaining the pH around neutrality, while the VFA systems (acetic, propionic, and butyric acids) are the major cause for pH decline. Under stable operating conditions, the H2 and acetic acid formed by acidogenic and acetogenic bacterial activity are utilized immediately by the methanogens and converted to methane. Consequently, the VFA concentration is typically very low, carbonate alkalinity is not consumed and the pH is stable. Conversely, under overload conditions or in the presence of toxins or inhibitory substances, the activity of the methanogenic and acetogenic populations is reduced causing an accumulation of VFA which in turn increases the total acidity in the water, reducing pH. The extent of the pH drop depends on the H2CO3 alkalinity concentration. In medium and well-buffered waters (typically the case in anaerobic digestion), high concentrations of VFA would have to form in order to cause a detectable pH drop, by which time reactor failure would have occurred. Therefore, pH measurement cannot form the sole control means, and direct measurement of either (or both) VFA or H2CO3 alkalinity concentration is necessary.
The most used technique for the determination of alkalinity for the control of the system anaerobic is described below: 25 mL of sample are taken and placed on a plate with stirring to a solution titrated with 0.02 N sulfuric acid, it initial pH is measured and the acid is added until the pH changes to 5.75 volume of spent acid, followed by titrating until the pH changes to 4.3 and the volume of spent acid is taken and is determined the alpha value. Alpha = acid vol. (5.75)/ acid vol. (4.3) if this value is greater than 0.55 the bioreactor is acidified and must add a buffer, on the contrary, if it is less, acid must be added [35].

Methanogenic activity determination
The specific methanogenic activity (SMA = gDQO-CH4•gVSS -1 •d -1 ) is defined as the rate of methane production, expressed as COD, regarding biomass expressed as the content of volatile suspended solids (VSS). In anaerobic degradability test measures the rate of degradation of a compound relative to a standard compound that is acetic acid determining [36]. Methanogenic activity were performed using the pressure transducer technique, which involves the monitoring of the pressure increase developed insealed vials fed with nongaseous substrates or pressure decrease in vials pressurised with gaseous substrates. Strict anaerobic conditions must be maintained. The same technique can be used to perform the methanogenic toxicity tests. The fifty percent inhibition concentration (IC50) was defined as the methanogenic concentration that caused a 50% relative activity loss [35,37]. The technique is as follows: 1. The sludge is left in mineral medium for 24 hours at 30-35 ºC in order to consume the entire carbon source which may have been brought into water of the plant. 2. Methanogenic activity tests were conducted in 160 mL in serology bottles with an operating volume of 150 mL. The volume of volatile suspended solids was set at 2 g/L and COD concentration used was varied from 0.25, 0.5, 1, 2, 3 y 5 g/L using acetate as a carbon source, and staying a relationship of 0.125, 0.25, 0.5, 1, 1.5 y 2.5 gCOD/gVSS respectively. 3. The bottles were sealed with rubber stoppers, and incubated 24 h at 35°C. 4. Methane was determined by the displacement volume of a solution of 3% NaOH [38].

Characterization of the sludge (total suspended solids (TSS), volatile suspend solids (VSS), fixed solids (FS))
The total solids (TS) contents of sludge are used in the design and process control of wastewater treatment facilities. Total dissolved solids (TDS) are used to evaluate the suitability of water for both domestic supplies and industrial purposes. The total suspended solids (TSS), including the volatile fraction (VSS), are commonly monitored to evaluate the degree of pollution in natural waters and serves as a key process control parameter for wastewater treatment operation.
The measurement of solids is by means of the gravimetric procedure. The various forms of solids are determined by weighing after the appropriate handling procedures.
1. Placing a clean porcelain crucible for 60 min at 550 °C in the muffle then is passed to a desiccator to cool and then weighed (noted as weight of the crucible). 2. Add with a blunt pipette 10 mL of anaerobics sludge. In a warming rack remove all the water possible. Go to the muffle furnace at 100 °C within 2 h; after this time is cooled and weighed (weight recorded as 100 °C). 3. Place the crucible in the muffle at 550 °C for 1 h and pass it to the desiccator and record the weight of the crucible (as weight at 550 °C). 4. Finally returned to the desiccator. After obtaining the three weights, and proceeded to determine the total solids, volatile and fixed as follows: [

Setting sludge volume index (SVI)
The sludge volume index is defined as 'the volume in mL occupied by 1 g of sludge after it has settled for a specified period of time' generally ranging from 20 min to 1 or 2 hr in a 1or 2 L cylinder. One-half hour is most common setting time allow the mixed liquor to settle for 30 min. (larger cylinder is desirable to minimize bridging of sludge floe and war effects). SVI is 50-150 mL/mg, the sludge settle ability if good.
SVI typically is used to monitor settling characteristics of activated sludge and other biological suspension. Although SVI is not supported theoretically, experience has shown it to be useful in routine process control. The SIV determination consisted of: 1. Place in the imhoff cone of 1000 mL, 100 mL of sludge and diluted to 1000 mL with phosphate buffer. 2. Was allowed to stand for 45 minutes and then stir the contents with a glass rod. 3. The volume occupied by the mud was measured by sedimentation after 30 minutes. 4. The SIV was calculated by dividing this volume by the present VSS g in 100 mL of sludge (Sludge/gVSS) [34].

Granule density
Among all the different types of anaerobic digesters applied at full scale, UASB (Upflow Anaerobic Sludge Blanket) reactors present the best commercial acceptance. The success of these reactors is related to their capacity for biomass accumulation by settling without the need of a carrier. Good settling properties are obtained through the flocculation of the biomass in the form of dense granules with diameters up to several millimetres. Actually, as individual cells and granules have similar densities, the greater settling velocity of the latter is only related to its larger particle size. The study of this phenomenon has lead to the development of several techniques for characterizing the resistance of the granules, their porosity, settling properties, bacterial composition and organization, activity, nature and composition of exopolymers, as well as their size distribution. This last parameter is particularly useful for studying the physico-chemical factors promoting sludge granulation [38].
1. Search about 6 stainless steel screens with an aperture of about 2 to 0.149 mm for the test. 2. In a vertical stack such that always at the top this larger diameter with respect to the bottom. 3. Take and pass a sample of 25 mL of sludge by the sieves. 4. Washing the sludge with a buffer and phosphate to make them pass through the screens; separated by size. 5. Retrieve the granules, separately, to be retained in the meshes with a backwash of phosphate buffer solution (Table 1) and then determine VSS, FS and TSS [38].

Aerobic processes
Among the biological processes used for the construction of bioreactors, there are two fundamental types of processes: the aerobic and anaerobic.
Aerobic processes are those that need oxygen. There are strict aerobic processes, which are those that can only work if there is oxygen, and facultative aerobic processes, which are those that can switch to anaerobic, according to the concentration of oxygen available.
In general, the aerobic processes have the following reaction: As can be seen in the above reaction, essentially, aerobic metabolism is responsible for catalyzing larger molecules into carbon dioxide, water and new cells. It is noteworthy that the different groups of microorganisms have different metabolisms, and therefore are able to catalyze a wide range of substances, although sometimes other secondary products are obtained in addition to those mentioned.
Aerobic processes are very efficient, operate at a wide range of possible substances to degrade, and in relatively simple cycles are stable; there is rapid conversion of organic pollutants in microbial cells and their operation relatively free of odors [38].

Isolation
Most of classical and clinical microbiology depends on the isolation of a pure culture that consists of only one species. This isolate is then later used for characterization such as species determination or an antibiotic resistance profile. For many applications it is essential to isolate and maintain a pure culture of the organism of interest. The goal is to obtain isolated colonies of the organism of interest. These colonies arise from one single cell and are therefore a clone of that original cell. The original cell is called a colony-forming unit (CFU).
To obtain a pure culture, it is crucial to maintain a sterile environmental.
To accomplish the microbiological analysis and isolation of strains, water samples are collected, this should be in sterile plastic containers of 500 mL. Is performed enrichment in nutrient broth, to ensure a favorable conditioning bacteria that may be stressed by environmental conditions and ensure better isolation, for which they are placed 10 mL of sterile nutrient broth sample, duplicate it.

Macroscopic and microscopic characterization
All cells contain the same mayor macromolecules in approximately the same proportions which perform essentially to same functions. Cell shape and arrangement are the initial steps for identifying bacteria. Cell grouping is related to the number of division and whether the cells remain together or separate after division. The Gram stain is an important toll for the classification and eventual identification of bacterial species.
The macroscopic characterization of the colonies was determined according to the observation of general appearance: shape, color, size, texture, elevation and range. The microscopic characterization to observe shape, color and size was performed by Gram stain for bacteria, with lactophenol blue stain for fungi and solution saline for yeast [37,39].

Biochemical characterization and selection of strains
To grow, microorganisms from the environment should take all the substances required for the synthesis of their cellular materials and power generation. These substances are known nutrients. A culture medium should contain, therefore, all the necessary nutrients in appropriate amounts in the specific requirements of the microorganisms to what has been devised. At selected strains were performed the following biochemical tests, in order to know their identification: catalase production, nitrate reduction, mobility, indole production, the use of citrate as a carbon source, production of urease, methyl red, Voges-Proskauer, carbohydrate fermentation, starch hydrolysis, gelatin hydrolysis and hydrolysis of esculin [40,41]. To determine resistance to low pH, this is changed in the culture media from 3 to 6. The pH was measured with a potentiometer, is adjusted with 10 M NaOH (sodium hydroxide) and HCl (hydrochloric acid).

Growth kinetics
The relatively large surface area of microorganisms exposed to the environment where they live enables them to take up and assimilate nutrients readily and a to multiply at impressive rates. An important parameter is the specific growth rate, wich is often expressed as the mean doubling time, defined as the time required by the microbial population to douyble its cellular protein content. The doubling time varies widely depending on the microbial species, the nature of the substrate and the degree of adaption to the substrate.
The growth of a bacterial culture can be determined by measuring the increase of turbidity in the medium as optical density or OD. The most common way to do this is to compare the absorbance of the culture to inoculated medium by shining light with a wavelength of 600 nm through the culture. The more growth occurs, the more turbid the culture will become and more light will be absorbed. Using optical density gives indirect measurement of bacterial growth. It doesn't tell anything about how many living cells are in the culture. This becomes especially important in stationary phase. Dead cells still absorb light. To determine the actual number of live bacteria the broth is diluted and plated on appropriate media and incubated. In theory, colonies arising on a plate originate from one single bacterium and give therefore an accurate number of the live cells in the culture at that time point. Procedure: The kinetics of selected bacterial growth, it is used 10 mL of 24 h culture of the strains and inoculated into 60 mL of nutrient broth, the following conditions: 35 °C and 100 rpm agitation. Samples were read every 30 minutes in a Spectronic 20D + visible spectrophotometer at 600 nm, substituting readings transmittance (% T) in the following equation: 10 2 log (% ) Where A, is the absorbance.
The different phases of growth kinetics can be observed by plotting the log (% T) versus time [1].

Biosorption process with bacteria in batch system
Microbial growth and substrate utilization expressions can be incorporated into mass balances to yield equations that can be used to predict effluent microorganism and substrate concentrations, and thus process efficiency. Continuous flow systems are grouped into two broad categories, suspended-growth and attached-growth processes, depending on whether the process microorganisms are maintained in suspension, or are attached to an inert medium (e.g., rocks, sand, granular activated carbon, or plastic materials). Attached-growth processes are also called fixed-film processes or biofilm processes.
Biosorption has provided an alternative process to the traditional physico-chemical methods, utilizing inexpensive biomass to sequester toxic heavy metals. In the 80 last decades, many researchers have focus on the treatment of wastewater containing heavy metals by the use of living organisms and/or their biomass. Many types of organisms such as bacteria, fungi, yeast and algae or their biomasses, have been used for metal uptake [42]. Biosorption tests batch system are carried out with each strain selected in 500 mL erlenmeyer flask, add 90 mL of a solution containing the metal to study, at an initial concentration established and adding 10 mL culture of 24 h of each strain, with a biomass concentration of 1 g/L. Target used 100 mL of metal solution without bacteria. Samples were analyzed in duplicate for each strain. Is used nephelometer of McFarland to estimate the number of cells/mL [40,42]. The conditions established are: pH between 4 and 5, if the metal precipitates at neutral pH, 37 °C and 100 rpm agitation [44,45]. To read the metal concentration is done by atomic absorption spectrophotometry, taking 5 mL sample every 15 minutes and prepared as described by [23,46] and the concentration is calculated from the calibration curve prepared with standard solution of each metal studied. The detection limits can be 0.02 mg/L, analyzing in duplicate.

Affecting parameters
Within the anaerobic and aerobic environment, various important parameters affect the rates of the different steps of the process, i.e. pH and alkalinity, temperature, and hydraulic retention times.
Each group of microorganisms has a different optimum pH range. Methanogenic bacteria are extremely sensitive to pH with an optimum between 6.5 and 7.2 pH, alkalinity and volatile acids/alkalinity ratio. The fermentative microorganisms are somewhat less sensitive and can function in a wider range of pH between 4.0 and 8.5. at a low pH the main products are acetic and butyric acid, while at a pH of 8.0 mainly acetic and propionic acid are produced.
The temperature has an important effect on the physicochemical properties of the components found in the digestion substrate. It also influences the growth rate and metabolism of microorganisms and hence the population dynamics in the anaerobic reactor. Acetotrophic methanogens are one of the most sensitive groups to increasing temperatures. The degradation of propionate and butyrate is also sensitive to temperatures above 70 °C. The temperature has moreover a significant effect on the partial pressure of H2 in digesters, hence influencing the kinetics of the syntrophic metabolism. Thermodynamics show that endergonic reactions (under standard conditions), for instance the breakdown of propionate into acetate, CO2, H2, would become energetically more favourable at higher temperature, while reactions which are exergonic (e.g. hydrogenotrophic methanogenesis) are less favoured at higher temperatures.
The solids retention time (SRT) is the average time the solids spend in the digester, whereas the hydraulic retention time (HRT) is the average time the liquid sludge is held in the digester. The subsequent steps of the digestion process are directly related to the SRT. A decrease in the SRT decreases the extent of the reactions and viceversa. Each time sludge is withdrawn, a fraction of the bacterial population is removed thus implying that the cell growth must at least compensate the cell removal to ensure steady state and avoid process failure [28].

McFarland nephelometer
The McFarland nephelometer was described in 1907 by J. McFarland as an instrument for estimating the number of bacteria in suspensions used for calculating the bacterial opsonic index and for vaccine preparation.
Another important factor is known that cells per milliliter are taken at a given time, and a known way is through the % of transmittance and that can be determined by the technique of McFarland nephelometer, which is described below.
McFarland Nephelometer Standards a. Set up 10 test tubes or vials of equal size and quality: Use new hoses washed and completely dry. b. Prepare H2SO4 1% chemically pure. c. Prepare an aqueous solution of barium chloride, 1% chemically pure. d. Add to the tubes the designated amounts of the two solutions as shown in Table 2 for a total of 10 mL/tube. e. Close the tubes or vials. The suspension of barium sulphate corresponding to an approximately homogeneous precipitate of density of the cells per milliliter in the standard variable, as shown in the Table 2. f. In the Figure 3(a) shows the % of transmittance against the number. From the tube which can be removed if there is not a spectrophotometer to read the transmittance, and in Figure 3(b) shows the number of cells that are depending on number.  Population density is monitored by taking readings of % of transmittance, which compared to the McFarland nephelometer; transmittance readings should be less than 10% in order to maintain the population density. This technique is used to know the time and turbidity of most practical way to achieve the desired amount of biomass for biosorption experiments batch system and continuous [39].

System in batch and continuous culture
The construction of bioreactors is based on a simple principle: make the pollutants are converted into the substrate (food) of microorganisms, and that these, while feeding and increases its population, decontaminated water. For the construction of a bioreactor is necessary to know the type of microorganisms with which they are going to work and as well as the growth curve characteristic of them [5].
The key factor of a bioreactor is to maintain microorganisms in the growth stage most of the time as possible, i.e. keep the microbial population to its maximum level, to optimize the efficiency of the degradation processes. This is achieved by controlling the environmental conditions (temperature, pH, aeration and nutrient availability) and the flows in and out, so never lack food and do not reach the death phase or endogenous [2,5].
The teams that are made homogeneous reactions can be of three general types: discontinuous (batch), continuous flow steady and unsteady flow semicontinuous.
Batch reactors are simple to operate and industrially used when small amounts are to treat substance. Continuous reactors are ideal for industrial purposes be treated when large quantities of substance and can achieve good control of product quality. Semicontinuous reactors are more flexible systems, but more difficult to analyze and operate than previous; in them the reaction rate can be controlled with a good strategy at the dosage of the reactants [48].
In a perfect batch reactor there is no entry or exit of reactant. It is further assumed that the reactor is well stirred, i.e. that the composition is the same at all points of the reactor for a given time instant. Since the input and output are zero the material balance is: All points have the same composition; the volume control to perform the balance is the entire reactor. Evaluating the terms: And given that: NA = NAo(1 -XA) results: Integrating gives the equation for the design for the batch reactor: If the reaction volume remains constant may be expressed in function of the concentration of This intermittent or batch reactor is characterized by the variation in the reaction's degree and the properties of the reaction mixture with the lapse of time [49] A batch reactor has no inflow or outflow reagents of the reaction products while being performed. In almost every batch reactors, the longer that a reactant in the reactor, most of it becomes product to reach equilibrium is exhausted or the reagent [50].
The reactor of the continuous flow type, in which the degree of reaction can vary with respect to the position in the reactor, but not a function of time. Therefore, one of the classifications of the reactors is based on the operation method [49].
Normally, the conversion increases with time that the reagents remain in the reactor. In the case of continuous flow systems, this time usually increases with increasing reactor volume; therefore, the conversion X is a function of reactor volume V [50].
The tubular reactor plug flow (RTFP) is characterized in that the flow is directed, without any element of the exceeding or being mixed with any other element located before or after that, i.e. no mixing in the flow direction (axial direction). As a result, all fluid elements have the same residence time within the reactor [48].
As fluid composition varies along the reactor, material balance must be performed in a differential volume element transverse to the direction of flow.

Inlet Outlet Disappearance of reaction  
That integrated is Or: In some cases it is convenient to divide the output current of a plug flow reactor by returning part of it to the reactor inlet.
The recirculation ratio is defined: flow which is recycled R flow out  (18) Raising the design equation for the reactor (within the recycle loop) without expansion If its considers that there is no expansion or contraction in the reactor, raising the junction of the inlet and the recirculation V1 = (R + 1) Vo and furthermore CA1 = (CAo + CAf) / (R + 1), therefore the equation of reactor design is: Another classification relates to the shape. If a laboratory vessel is equipped with a stirrer efficient, composition and temperature of the reaction mass will tend to be equal in all areas of the reactor. A container in which there is uniformity of properties is called a stirred tank reactor (or well mixed) or STR [48].

Anaerobic continuous studies
Generally, the design rules of biological reactors are all based on high removal efficiency of degradable organic matter. Consequently, if the substrate composition and strength of a wastewater are known, a basic design of a high-rate anaerobic system can be established. According to [52], the main design criteria of UASB reactors are, among others: applicable organic load, upflow velocity, three-phase separator, and influent distribution system.
The UASB reactors are generally designed based on the organic volumetric load (OVL) (kgCOD/m 3 -day) that is defined as follows: where Q: influent flow rate (m 3 /day), So: influent COO (kgCOD/m 3 ) , and V: volume of reactor (m 3 ), From Equation (21) the volume of the reactor, V, can be obtained: For most industrial wastewaters, the OVL (based on degradable COD) is the critical factor for the reactor volume. Its value depends on the quantity and quality of the granular sludge; the nature, type, and concentration of the pollutants; the temperature; the required treatment efficiency and the desired safety regarding peak loads [16,53].

Studies of biosorption of heavy metals with aerobic bacteria using biomass support in batch system
For studies of biosorption of heavy metals using aerobic bacteria and a support for the biomass, using 500 mL Erlenmeyer flasks, which are placed 5 g of the support for the immobilization of selected biomass, 90 mL of a solution containing the metal study established at an initial concentration, 10 ml of biomass with a density of 1 g/L and as target, 100 mL of metal with 5 g of support material. The flasks were plugged with a cotton swab having aeration, then is placed in an incubator with shaking at 100 rpm and temperature established for mesophilic bacteria to 45 °C. Samples are taken at set times to analyze the concentration of metals by atomic absorption. The conditions are the same for the studies using only bacteria without carrier material. All experiments were performed in duplicate and the efficiency of biosorption (E) is calculated using the equation: Where: Co y Cf initial and final amounts of the metal (mg/L).

Studies of heavy metal biosorption in a continuous system with aerobic biomass using biomass support
Biosorption is a rapid phenomenon of passive metal sequestration by the non-growing biomass. To carry out the studies of metal biosorption in a continuous system is conditioned first a reactor column, which has side ports for sampling. The reactor is packed with carrier material of biomass with a particle size between 1 and 6 mm, to avoid clogging. Both mineral medium such as air are fed through the bottom of the reactor to promote the growth of bacteria and the pH is controlled if the metal to be studied could precipitate at neutral pH. The mineral medium is inoculated with 10% biomass that develop in this medium for the time given the growth kinetics and the reactor is kept in recirculation until the development of biomass (1 g/L) and that adheres to support material. Biomass concentration was estimated by measuring the percent of transmittance to an optical density at 600 nm (Spectronic 20D + ) and for the amount of biomass produced in cells/mL was determined using the Table 2 of McFarland nephelometer, described above.
When produced in the reactor is 1 g/L of biomass and this is immobilized in the zeolite, are set constant conditions of operation of the reactor as: air flow 10 times the feed flow of the contaminated medium, hydraulic retention time (HRT) of a day and ambient temperature of 30 °C. The tests are performed to set conditions of initial concentrations of metals and pH set, and takes days to the input samples at different heights of the reactor and output to meet the metal concentration, biomass is recycled to make more time contact between the bacteria and the metal being studied. It can be perform a second and third experimental run at different initial concentrations of feeding and at the same pH, maintaining the feed stream and recirculation same. Other studies may be changing the pH, keeping other conditions constant.
In the experimental runs carried out is analyzed for pH, metal concentration by atomic absorption and to determine the concentration of cells/mL of biomass, measures the percentage of transmittance in the spectronic 20D + and compared by the technique of Nephelometer of Mc Farland. The support used is analyzed by the technique of sludge digestion, are performed analyzes of biomass produced per day and chemical oxygen demand (COD). At the end of the experiments are performed technical analyses of the medium used X-ray Diffraction (XRD), scanning electron microscopy (SEM) and Energy Dispersive Spectroscopy X-ray (EDS) at different column heights to see if deposited on the support certain amount of heavy metals or all was absorbed by the biomass.

Support the immobilization of biomass
Immobilization of cells as biocatalysts is almost as common as enzyme immobilization. Immobilization is the restrict ion of cell mobility within a defined space. Immobilized cell cultures have the following potential advantages over suspension cultures.
 Immobilization provides high cell concentrations.  Immobilization provides cell reuse and eliminates the costly processes of cell recovery and cell recycle.  Immobilization eliminates cell washout problems at high dilution rates.  The combination of high cell concentrations and high flow rates (no washout restrictions) allows high volumetric productivities.
 Immobilization may also provide favorable microenvironmental conditions (i.e., cellcell contact, nutrient-product gradients, pH gradients) for cells, resulting in better performance of the biocatalyst» (e.g., higher product yields and rates).  In some cases, immobilization improves genetic stability.  For some cells, protection against shear damage is important.
The major limitation on immobilization is that the product of interest should be excreted by the cells. A further complication is that immobilization often leads to systems for which diffusional limitations are important. In such cases the control of microenvironmental conditions is difficult, owing to the resulting heterogeneity in the system. With living cells, growth and gas evolution present significant problems in some systems and can lead to significant mechanical disruption of the immobilizing matrix.
The primary advantage of immobilized cells over immobilized enzymes is that immobilized cells can perform multistep, cofactor-requiring, biosynthetic reactions that are not practical using purified enzyme preparations.
Adsorption of cells on inert support surfaces has been widely used for cell immobilization.
The major advantage of immobilization by adsorption is direct contact between nutrient and support materials. High cell loadings can be obtained using microporous support materials. However, porous support materials may cause intraparticle pore diffusion limitations at high cell densities, as is also the case with polymer-entrapped cell systems. Also, the control of microenvironmental conditions is a problem with porous support materials. A ratio of pore to cell diameter of 4 to 5 is recommended for the immobilization of cells onto the inner surface of porous support particles. At small pore sizes. Accessibility of the nutrient into inner surfaces of pores may be the limiting factor, whereas at large pore sizes the specific surface area may be the limiting factor. Therefore, there may be an optimal pore size, resulting in the maximum rate of bioconversion.
Adsorption capacity and strength of binding are the two major factors that affect the selection of a suitable support material. Adsorption capacity varies between 2 mg/g (porous silica) and 250 mg/g (wood chips). Porous glass carriers provide adsorption capacities (l0 8 to 10 9 cells/g) that are less than or comparable to those of gel-entrapped cell concentrations (10 9 to 10 11 cells/mL). The binding forces between the cell and support surfaces may vary, depending on the surface properties of the support material and the type of cells. Electrostatic forces are dominant when positively charged support surfaces (ion exchange resins, gelatin) are used. Cells also adhere on negatively charged surfaces by covalent binding or H bonding. The adsorption of cells on neutral polymer support surfaces may be mediated by chemical bonding, such as covalent bonding, H bonds, or van der Waals forces. Some specific chelating agents may be used to develop stronger cell-surface interact ions. Among the support materials used for cell adsorption are porous glass, porous silica, alumina, ceramics, gelatin, chitosan, activated carbon, wood chips, polypropylene ionexchange resins (DEAE-Sephadex, CMC-), and Sepharose [54].
Various reactor configurations can be used for immobilized cell systems. Since the support matrices used for cell immobilization are often mechanically fragile, bioreactors with low hydrodynamic shear, such as packed-column, fluidized-bed, or airlift reactors, are preferred. Mechanically agitated fermenters can be used for some immobilized-cell systems if the support matrix is strong and durable. Any of these reactors can usually be operated in a perfusion mode by passing nutrient solution through a column of immobilized cells [54].
Since the design of reactors for the removal of heavy metals from liquid effluent must consider optimum contact between these and the biomass, it has been considered the use of different types of support for the immobilization of the biomass with the aim of achieving greater efficiency in removing heavy metals. This achieves prevent biosorbent is removed from the reactor in the output current and at the same time is obtained a greater mechanical stability thereby reducing the shear stresses that could damage the structure of the microorganism which affects removal efficiency heavy metals [53].
Living biomass immobilized, must first take the form of biofilm on supports prepared from a variety of inert materials. One of the materials that have been studied as biomass support is activated carbon by porosity and high surface area, besides being an abundant product is obtained as a byproduct of the production of oil from coconut, olive and processing sugarcane [53]. Other materials have been used as biomass support such as silica, polyacrylamide gel and polyurethane include agar, cellulose, alginates, polyacrylamides, the silica gel, sand, textile fibers, calcium alginate, polysulfone, glutaraldehyde and other organic compounds, and have been used for removing heavy metals [55,56].
There are other materials that could be used for biomass carriers; such as the natural zeolites are known important industrial applications due to its high affinity for water and that the cavities only allow passage of molecules of a certain size. Have been used as additives in animal feed, such as soil improvers in agriculture due to increased nitrogen retention and soil moisture, and as catalysts in industrial processes of refining, petrochemicals and fine chemicals [57].

Activated charcoal
The name of activated charcoal is applied to a series of artificially prepared porous carbons to exhibit a high degree of porosity and a high inner surface. These characteristics are responsible for their adsorptive properties, which are used widely in many applications in gas phase and liquid phase. Chemically it is composed of carbon, oxygen, hydrogen and ash. The activated carbon adsorbent is a very versatile, because the size and distribution of pores in the carbonaceous structure can be controlled to meet the current and future technology. The pore sizes ranging from smaller called micropores (2.0 nm) until the mesopores (2 -50 nm) and macropore (<50 nm). It should be borne in mind that most adsorption occurs in the micropores (greater than 90% of the surface area) the mesopores and macropores are extremely important because in the activated charcoal are those which facilitate access of the species will adsorb to the interior of the particle and of the micropores [58].
One of the materials that have been studied as biomass support is activated charcoal. Its high porosity and high surface area activated charcoal make it an ideal material to be carried out the process of adsorption of heavy metals. Another reason why activated charcoal is used for the adsorption is its low cost, since it is an abundant product is obtained as a byproduct of the production of oil from coconut, olive and processing of sugar cane [55].

Glutaraldehyde
Microbial cells can be immobilized by cross-linking between cells, using bi or multifunctional reagents as glutaraldehyde or toluene di isocyanate.
Glutaraldehyde is a colorless liquid with a pungent odor used to sterilize medical and dental equipment is also used in water treatment industry and as a chemical preservative. However, it is toxic and can cause severe eye irritation, nose, throat and lungs, along with headaches, drowsiness and vomiting. Glutaraldehyde monomer can polymerize by aldol condensation, giving poliglutaraldehído alpha, beta unsaturated reaction typically occurs at alkaline pH [59].

Silica
The mechanism involved is based on the formation of covalent bonds between the inorganic support (silica) and cells in the presence of crosslinking agents. A said joint is needed for the modification of the support surface. The reaction requires the introduction of reactive organic groups on the silica surface for the attachment of cells to the support. As coupling agent generally used aminopropyl triethoxy silane; this organic functional group condenses with hydroxyl groups of the silica and the group as a result becomes available for covalent bond formation on the surface. Covalent bonds can also be established by treating the silica surface with glutaraldehyde or isocyanate.
The advantage of this method is that the support can be generated without the limitations on physical and chemical conditions imposed by the biocatalyst, which can be optimized by the characteristics of mechanical stability, porosity, strength of the support, etc.
When you want to form covalent bonds between the substrate and cells, the problem is how to promote adhesion of cells to relatively large surface without damaging its stability and resistance to washing. The support may have pores of greater diameter than the cell to allow the latter to penetrate the internal surfaces. Porous supports are used which are embedded by immersion in cell suspensions [60].
Another important matrix being used for immobilization for metal removal is silica. Silicaimmobilized preparations offer advantage in terms of reusability and stability. The silica immobilized product is mechanically strong and exhibits excellent flow characteristics [68]. A silica immobilized algal preparation AlgaSORBR (Bio-Recovery Systems, Inc., Las Cruces, NM 80003, USA) which is being used commercially retains approximately 90% of the original metal uptake efficiency even after prolonged use (> 18 months) [57].

Polyacrylamide gel
Polyacrylamide gels are formed by polymerization of acrylamide by the action of a crosslinked agent, is chemically inert, uniform properties, able to be prepared quickly and reproducibly. Thus, in addition, transparent gels with mechanical stability, water insoluble, relatively non-ionic and allow good visualization of the bands for a long time. Also has the advantage that by varying the concentration of polymers can be modified in a controlled manner the pore size, there sometimes is used in diagnosis least because of their neurotoxocidad [59].
Whole cell immobilization within a polyacrylamide gel also provides a useful laboratory scale system and has been used to biosorb and recover a number of heavy metal(s). Good results have been obtained in the case of polyacrylamide immobilized cells of Citrobacter where a very high removal of uranium, cadmium and lead was observed from solutions supplemented with glycerol -2PO4. Rhizopus arrhizus biomass immobilized on polyacrylamide gel was effective in almost completely removing Cu 2+, Co 2+ and Cd 2+ from synthetic metal solution [26,55].

Polyurethane
Inert materials such as polyurethane, impregnated with a suitable culture medium provided a homogeneous aerobic condition in the fermenter and impurities do not contribute to the final product. An additional advantage of using inert supports is the easy recovery of the product of interest, ease of performing balances because all nutrient concentrations in the middle of production are known, so one can study the effect of a given component of medium [60].
Recent studies have shown the superiority of polyurethane and polysulfone as immobilization support in comparison to polyacrylamide and alginate matrices. It has been reported a novel polyurathane gel bead fabrication technique for immobilizing Pseudomonas aeruginosa CSU. Preliminary studies conducted by them revealed that the P. aeruginosa CSU biomass immobilized within the polyurethane gel beads were effective in the removal of hexavalent uranium from low concentration acidic waters. Other authors have been immobilized phormidium laminosum on polysulfone and epoxy resins. They were successful in reusing the polysulfone immobilized biomass for ten consecutive biosorption/desorption cycles without apparent loss of efficiency after reconditioning it with 0.1 M NaOH. Immobilization of Citrobacter biomass in polysulfone matrix increased its metal loading capacity for lead, cadmium and zinc metals [57].

Alginate
There are many studies on the composition of alginate and its advantages to cell immobilization. Because the chemical composition of this polymer and as a consequence that the same reactions can be obtained in reaction, alginate gels are recommended for cells sensitive to environmental conditions. Recent studies of the diffusional characteristics of the immobilized system, have improved our understanding of the environment surrounding the immobilized cells, optimize protocols and improve the stability of alginate gels [60].
One of the matrices that have been used in metal recovery by both viable and non-viable cells is the entrapment in the matrix of insoluble Ca-alginate. Fluidized beds of Caentrapped cells of Chlorella vulgaris and Spirulina platensis were successfully used to recover gold from a simulated gold-bearing process solution containing AuCl4, CuCl2, FeCl2 and ZnCl2. The Ca-alginate immobilized cells of Chlorella salina also showed greater binding of cobalt, zinc and manganese than the free cells. Rhizopus arrhizus entrapped on alginate beads was successfully used for the removal of uranium over multiple biosorption and desorption cycles. Accumulation was also dependent on cell density in alginate beads with greater uptake of cobalt at the highest cell densities [57].

Natural zeolite
Zeolites are crystalline aluminosilicates, three-dimensional, microporous, based on framework structure with a rigid anion, with well-defined channels and cavities. These cavities contain exchangeable metal cations (Na + , K + , etc.) And can also retain removable and replaceable guest molecules (water in natural zeolites). To date about 40 have been characterized structures of natural zeolites and have developed more than 130 synthetic structures. The most important natural zeolites are analcime, chabazite, clinoptilolite, erionite, ferrierite, heulandite, laumontite, and phillipsite mordonita [58].
Zeolites are composed of aluminum, silicon, sodium, hydrogen and oxygen. The crystal structure is based on the three network addresses with SiO4 tetrahedral shaped with four oxygens shared with adjacent tetrahedra. The physical properties unique aspects provide for a wide variety of practical applications. Figure 4 shows the basic structure of the zeolite tetrahedral [63]. The physical properties of the zeolite are that they possess features bright, hardness and wear resistance. Applications of natural zeolites make use of one or more of its chemical properties, usually including adsorption, ion exchange and catalysis. These properties are a function of the crystal structure of each species, cationic structure and composition [63].
Clinoptilolite is from the zeolite minerals are best known for its uses and applications. It is a natural zeolite formed from volcanic ash in lakes and marine waters millions of years ago. Clinoptilolite, is the most studied and is considered more useful, since it is known as an adsorbent of certain toxic gases such as hydrogen sulfide and sulfur dioxide. In fact few countries that have had deposits in operation, including: Japan, Italy, USA, Russia, Hungary, Bulgaria, Cuba, Yugoslavia and Mexico [39]. Recognizes the capacity of the zeolites natural adsorb heavy metals and other contaminants from water. In certain cases, it requires a pretreatment of the zeolite to modify or improve its adsorption properties [62].

Conclusion
This chapter has provided the results of research of aerobic and anaerobic biomass in the batch and continuous system using a support for the biomass: silica, polyacrylamide gel, polyurethane, calcium alginate, glutaraldehyde, charcoal and zeolites. The use of support for the biomass increases the development of the microorganisms. Also describes the affecting parameters: time, pH, temperature, HRT, toxicity and stirring speed. Also in this chapter describe the techniques for determination of parameters for anaerobic such as, chemical oxygen demand (COD), alkalinity, methane production, total solids (TSS), volatile solids (VSS), volatile fatty acids (VFA) concentrations, and for the aerobics, the biomass concentration using % of transmittance, McFarland nephelometer, isolation, macroscopic and microscopic characterization, growth kinetics, in batch and continuous system.