Citation: M. Mascher (2022-11-01): TRITEX pipeline source code and documentation. DOI:10.5447/ipk/2022/28

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Abstract: Source code and documentation of the TRITEX sequence assembly pipeline for plant genomes developed in the research group Domestication Genomics at the Leibniz Institute of Plant Genetics and Crop Research (IPK) Gatersleben. TRITEX has shell and R scripts and uses standard bioinformatics tools. The source is maintained in a Bitbucket repository (https://bitbucket.org/tritexassembly/tritexassembly.bitbucket.io/commits/). The version available here is commit c4c3fbd.

License: CC BY 4.0 (Creative Commons Attribution)

DOI: 10.5447/ipk/2022/28

Content: 4 Directories 55 Files (4.5 MB)

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//pupke@ipk-gatersleben.de/TRITEX pipeline source code and documentation [4 Directories 9 Files]
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Metadata
CONTRIBUTOR:
CREATOR:
Martin Mascher [Show full information]
PUBLISHER: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
SIZE: 4.5 MB
SUBJECT: genome assembly, long-reads, chromosome conformation capture sequencing, genetic map, pangenome
COVERAGE: none
DATE: Event: event
CREATED: TimePoint: Tue Nov 01 13:27:44 CET 2022
UPDATED: TimePoint: Tue Nov 01 13:27:59 CET 2022
LANGUAGE: de_DE
RELATION: none
SOURCE: none
Revision: 2 - CreationDate: Tue Nov 01 13:27:44 CET 2022 - RevisionDate: Tue Nov 01 13:27:59 CET 2022