Published August 21, 2023
| Version v4.0
Software
Open
danforthcenter/plantcv: PlantCV v4.0
Creators
- Noah Fahlgren1
- Haley Schuhl1
- Malia Gehan2
- Hudanyun Sheng3
- Jorge Gutierrez
- Dominik Schneider
- David Peery
- JoeDuenwald
- bganglia
- GrantKonkel
- Max
- Steen Hoyer
- Cesar Lizarraga
- leowlima
- sdkenney42
- wurDevTim
- Stylopidae1793
- Jeffrey Berry
- Mark Wilson
- lchavez037
- scallen81
- Eric Platon
- zeeuqsze
- lacostag
- Alexandria Pokorny
- Adam Dimech
- annacasto
- jwheeler5
- 1. @danforthcenter
- 2. Donald Danforth Plant Science Center
- 3. @danforthcenter @GatorSense @codecademy
Description
Many thanks to all the contributors for all that hard work that has gone into this release!
What's Changed- Update 4.x branch by @DannieSheng in https://github.com/danforthcenter/plantcv/pull/785
- Update the 4.x branch from the main branch by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/803
- update photosynthesis package to use xarray and analyze entire induction curve protocols by @dschneiderch in https://github.com/danforthcenter/plantcv/pull/790
- Update 4x from main by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/806
- Update 4x by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/812
- Synchronize the main branch with the 4x branch by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/824
- Addition of constellation homologies workflow with tutorials by @jgerardhodge in https://github.com/danforthcenter/plantcv/pull/690
- Update YII and NPQ measurements and options by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/826
- Update 4x by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/835
- Update 4x by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/847
- Annotation sub-package and point annotation tool (a.k.a. interactive CustomROI) by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/816
- Rebase from master by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/854
- Two io functions by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/823
- Update with master by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/857
- Update 4x by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/860
- Pixel scatter visualization by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/810
- 2D threshold by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/840
- Merges docs fix into the 4x branch by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/862
- Rebase 4.x branch on the main branch by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/878
- Create time lapse video (visualize sub package) by @DannieSheng in https://github.com/danforthcenter/plantcv/pull/762
- Update 4x by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/884
- Watershed segmentation by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/767
- Update 4x by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/897
- Hyperspectral rotation by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/888
- Update 4x by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/908
- Write hyperspectral data by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/889
- Update 4x by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/919
- Refactor parallel subpackage to use dataframes and grouping by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/887
- Added automatic grid detection to multi by @jdavidpeery in https://github.com/danforthcenter/plantcv/pull/911
- Update sample_images to handle phenodata datasets by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/925
- replace list expression with explicit for loop in segment_image_series by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/929
- Apply bugfix to v4 by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/936
- Update 4x by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/943
- Add helper function to centralize usage of OpenCV findContours by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/939
- Update 4.0 by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/944
- Update roi rectangle objects class by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/946
- Update roi.ellipse to use objects class by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/951
- Update roi custom objects class by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/953
- Update find objects objects class by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/947
- standard color correction matrix function by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/931
- Fix test cache dir by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/957
- Pin matplotlib version by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/960
- use objects class in roi2mask by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/952
- Reconfigure dask futures and client management by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/958
- Update release 4.0 by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/969
- Update 4.x by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/970
- Add parameters to mean adaptive thresh by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/937
- Update release 4.0 by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1004
- Update 4.x by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1005
- Utilize Objects class in pcv.roi.from_binary_image by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/980
- Update report size marker objects class by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/955
- Update roi circle objects class by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/993
- Update visualize_ovelay_two_imgs.md by @jmgordon1223 in https://github.com/danforthcenter/plantcv/pull/1016
- make Objects class return Objects instance while iterating by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/1068
- Pull down updates into 4.x branch by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1091
- Update release 4.0 by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1093
- Hsi read data flexible hdr format by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/956
- Changed print to plot in otsu_thresholds.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1101
- Changed print to plot in output_mask.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1102
- Changed print to plot in photosynthesis_analyze_fvfm.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1103
- Limit upper pandas version by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1107
- Update 4x by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1104
- Update release-4.0 by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1108
- Replace command-line scripts with console scripts by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1099
- Changed print to plot in rgb2lab.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1117
- Changed print to plot in rgb2hsv.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1116
- Changed print to plot in rgb2gray.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1115
- Changed print to plot in rgb2cmyk.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1114
- Changed print to plot in report_size_marker.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1113
- Changed print to plot in rectangle_mask.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1112
- Changed print to plot in read_image.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1111
- Changed print to plot in photosynthesis_read_cropreporter.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1109
- Changed print to plot in read_bayer.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1110
- Changed print to plot in roi_objects.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1118
- Changed print to plot in scharr_filter.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1124
- Changed print to plot in scale_features.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1123
- Changed print to plot in saturation_threshold.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1122
- Changed both prints to plot in rotate2.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1121
- Changed print to plot in roi2mask.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1120
- Changed print to plot in roi_rectangle.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1119
- Rename objects parameter in pcv.auto_crop by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/954
- update roi_objects with Objects class by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/1037
- Changed second print to plot in roi_objects.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1126
- Changed print to plot in segment_angle.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1127
- Changed print to plot in segment_curvature.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1128
- Changed print to plot in segment_euclidean_length.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1129
- Changed print to plot in segment_id.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1130
- Changed both prints to plot in opening.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1131
- Changed print to plot in segment_insertion_angle.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1133
- Changed print to plot in segment_pathlength.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1134
- Changed print to plot in segment_skeleton.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1135
- Changed print to plot in segment_sort.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1136
- Changed print to plot in segment_tangent_angle.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1137
- Changed print to plot in shift.md by @JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1138
- Update 4x with updates in main by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1139
- Simplify histogram code and fix bug in minimum value calculation by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1141
- Update 4.x by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1142
- Update release 4.0 by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1143
- Fix threshold dual channels returning bad dtype by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/1144
- Release 4.0 bugfix by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1146
- Make helper roi_filter function by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/1147
- Add
pcv.create_labels
function by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1149 - Add iteration helper function by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1148
- Add composition helper function by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1152
- Add grayscale to rgb helper by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1153
- Add affine color correction function by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/1150
- Update release 4 by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1157
- Add analysis submodule and shape analysis function by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1154
- Added-warn-function-replace-print by @zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1159
- Add warn cluster contour splitimg by @zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1160
- Add-warn-replace-print-obj-comp by @zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1163
- add-warn-replace-print-roi_objects by @zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1164
- add-warn-replace-print-analyze_index by @zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1165
- add-warn-replace-print-roi_methods by @zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1166
- add-warn-replace-print-threshold_methods by @zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1167
- add-warn-replace-print-helpers by @zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1168
- Add analyze color function to analyze submodule by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1170
- start function bound horizontal by @JorgeGtz in https://github.com/danforthcenter/plantcv/pull/1161
- Define type for markers in watershed by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1175
- Update release4 by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1176
- Iterate analyze grayscale by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1172
- Add updated analysis function for thermal images that utilizes iteration by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1177
- Add type to markers by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1181
- Update codecov action to v3 by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1180
- Update release 4.0 by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1183
- Add analyze.spectral_reflectance function by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1178
- Add analyze.spectral_index function by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1179
- Remove obj from homology.acute by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1186
- Update x axis pseudolandmarks, remove
obj
input parameter by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1169 - Update y axis pseudolandmarks by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1185
- Updates to stored "tips" and "branch_pts" getting stored to observations during Morphology workflows by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/995
- Skip CSV output for x-y points by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1198
- Update pseudocolor remove obj and obj_padding by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1184
- auto_crop replace objects param with mask by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1192
- Move landmark_reference_pt_dist to the homology submodule by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1199
- Refactor scale_features by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1200
- Deprecate cluster_contours by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1195
- Deprecate cluster contours splitimg by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1196
- Deprecate cluster contours mask by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1197
- Generalize photosynthesis filenaming by @wurDevTim in https://github.com/danforthcenter/plantcv/pull/984
- Deprecate acute_vertex by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1187
- Deprecate analyze bound horizontal by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1188
- Deprecate analyze bound vertical by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1189
- Deprecate analyze color by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1190
- find_color_card typo fix, move "label" param into correct function by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1202
- Minor docs fixes by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1204
- Deprecate analyze_nir_intensity by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1205
- Deprecate analyze_object by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1206
- Deprecate analyze_thermal_values by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1207
- Remove hyperspectral.analyze_index by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1208
- Deprecate rectangle mask by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1209
- Iterate psii analysis by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1201
- remove max_val param from threshold.binary() by @afinit in https://github.com/danforthcenter/plantcv/pull/1210
- remove max_val param from threshold.mean() by @afinit in https://github.com/danforthcenter/plantcv/pull/1212
- remove max_val param from threshold.otsu() by @afinit in https://github.com/danforthcenter/plantcv/pull/1213
- remove max_val param from threshold.gaussian() by @afinit in https://github.com/danforthcenter/plantcv/pull/1214
- remove max_val param from threshold.triangle() by @afinit in https://github.com/danforthcenter/plantcv/pull/1218
- remove max_val param from threshold.texture() by @afinit in https://github.com/danforthcenter/plantcv/pull/1219
- remove max_val param from threshold._call_threshold() by @afinit in https://github.com/danforthcenter/plantcv/pull/1220
- remove max_val param from threshold._call_adaptive_threshold() by @afinit in https://github.com/danforthcenter/plantcv/pull/1221
- Remove deprecated plantcv.rotate function by @afinit in https://github.com/danforthcenter/plantcv/pull/1222
- remove max_val param from threshold.dual_channels() by @afinit in https://github.com/danforthcenter/plantcv/pull/1224
- Add all-contributors table and badge by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1215
- Deprecate object composition by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1216
- optimizing naive_bayes_classifier by @afinit in https://github.com/danforthcenter/plantcv/pull/1223
- Add config file for Read the Docs by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1226
- Update release-4.0 from main by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1230
- Deprecate visualize cluster contours by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1229
- Deprecate roi objects by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1228
- docs: add maliagehan as a contributor for projectManagement, code, and 3 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1234
- docs: add HaleySchuhl as a contributor for code, doc, and 6 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1236
- docs: add DannieSheng as a contributor for code, doc, and 2 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1240
- docs: add dschneiderch as a contributor for code, doc, and 2 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1242
- docs: add GrantKonkel as a contributor for code, and doc by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1245
- docs: add bganglia as a contributor for code, doc, and test by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1246
- docs: add JoeDuenwald as a contributor for doc by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1248
- docs: add JorgeGtz as a contributor for code, doc, and 4 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1251
- docs: add sdkenney42 as a contributor for doc by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1253
- docs: add maxjfeldman as a contributor for code, doc, and ideas by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1254
- docs: add jshoyer as a contributor for code, doc, and ideas by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1255
- docs: add jdavidpeery as a contributor for code, doc, and 2 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1256
- docs: add leowlima as a contributor for doc by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1257
- docs: add jberry47 as a contributor for code, doc, and 2 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1258
- docs: add calizarr as a contributor for code, doc, and test by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1259
- docs: add aapokor as a contributor for code, doc, and test by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1260
- docs: add scallen81 as a contributor for code by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1261
- docs: add lacostag as a contributor for doc by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1262
- docs: add Stylopidae1793 as a contributor for doc by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1263
- docs: add jwheeler5 as a contributor for code, doc, and test by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1264
- docs: add AdamDimech as a contributor for code, doc, and 2 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1265
- docs: add annacasto as a contributor for code, doc, and 4 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1266
- docs: add ic as a contributor for code, doc, and test by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1267
- docs: add lchavez037 as a contributor for doc by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1268
- docs: add adrianethompson as a contributor for code, doc, and tutorial by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1269
- docs: add SethPolydore as a contributor for code, doc, and test by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1270
- docs: add Jake-Jasper as a contributor for code, and doc by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1271
- docs: add joshqsumner as a contributor for code, doc, and 3 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1272
- docs: add vektorious as a contributor for code, doc, and test by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1273
- docs: add cluebbert as a contributor for code by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1274
- docs: add AzlinII as a contributor for code by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1275
- docs: add jmgordon1223 as a contributor for doc by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1276
- docs: add zeeuqsze as a contributor for doc, tutorial, and 2 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1277
- docs: add fbarbe00 as a contributor for code by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1278
- docs: add typelogic as a contributor for code by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1279
- docs: add Sanazjd as a contributor for code, doc, and 2 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1280
- docs: add fabid as a contributor for code by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1281
- docs: add jgerardhodge as a contributor for code, doc, and test by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1282
- docs: add kmurphy61 as a contributor for doc, tutorial, and 3 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1283
- docs: add stiphyMT as a contributor for code by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1284
- docs: add ygarrot as a contributor for doc by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1285
- docs: add stevenhwu as a contributor for code by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1286
- docs: add kbgilbert as a contributor for design by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1287
- docs: add nfahlgren as a contributor for projectManagement, code, and 8 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1288
- docs: add maliagehan as a contributor for talk, tutorial, and 3 more by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1289
- docs: add wurDevTim as a contributor for code, doc, and test by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1290
- docs: add afinit as a contributor for code, doc, and test by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1291
- Update release-4.0 [skip ci] by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1292
- Deprecate get_nir by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1294
- Deprecate analyze spectral by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1295
- Update Watershed tutorial by @maliagehan in https://github.com/danforthcenter/plantcv/pull/1298
- Add grayscale tutorial and replace old NIR by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1300
- Limit jupyterlab [skip ci] by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1307
- Update PSII dataset names by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1309
- Tutorial update vis nir by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1301
- Tutorial Update thermal by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1302
- Update vis tutorial by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1303
- Update multi object tutorial by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1305
- Update ml / Naive Bayes tutorial by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1306
- Update morphology_tutorial by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1308
- Update tutorial input output by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1311
- Hyperspectral tutorial by @maliagehan in https://github.com/danforthcenter/plantcv/pull/1313
- Remove max value references by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1314
- Replace plotnine with altair by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1319
- Update seed tutorial URLs by @Stylopidae1793 in https://github.com/danforthcenter/plantcv/pull/1316
- Add hyperspectral crop by @maliagehan in https://github.com/danforthcenter/plantcv/pull/1323
- update contribution guide by @maliagehan in https://github.com/danforthcenter/plantcv/pull/1320
- Revise updating.md by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1324
- Only add tabulate naive bayes.md [skip ci] by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1318
- Rename to ksize in adaptive thresholding methods by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1325
- Cropreporter adding pam by @wurDevTim in https://github.com/danforthcenter/plantcv/pull/1217
- Add extra table of contents links by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1326
- Deprecate print results by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1327
- smf gallery wall by @maliagehan in https://github.com/danforthcenter/plantcv/pull/1329
- Rename job_extra to job_extra_directives by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1333
- Update installation guide by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1332
- Add sample label param by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1328
- Remove binder buttons from tutorial gallery by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1331
- Change license mpl2 by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1334
- Update PSII tutorial by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1336
- Update json2csv outputs by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1335
- Tutorial arabidopsis multi plant by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1338
- Set num_labels to num ROIs by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1340
- Remove find objects functions by @dhiraj-ms in https://github.com/danforthcenter/plantcv/pull/1341
- docs: add dhiraj-ms as a contributor for code, doc, and test by @allcontributors in https://github.com/danforthcenter/plantcv/pull/1342
- update docs by @HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1339
- Release 4.0 by @nfahlgren in https://github.com/danforthcenter/plantcv/pull/1346
- @wurDevTim made their first contribution in https://github.com/danforthcenter/plantcv/pull/984
- @afinit made their first contribution in https://github.com/danforthcenter/plantcv/pull/1210
- @allcontributors made their first contribution in https://github.com/danforthcenter/plantcv/pull/1234
- @dhiraj-ms made their first contribution in https://github.com/danforthcenter/plantcv/pull/1341
Full Changelog: https://github.com/danforthcenter/plantcv/compare/v3.14.3...v4.0
Files
danforthcenter/plantcv-v4.0.zip
Files
(210.8 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/danforthcenter/plantcv/tree/v4.0 (URL)