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Published April 3, 2023 | Version 5.1.0
Software Open

nipy/nibabel: 5.1.0

Creators

  • 1. School of Psychology, University of Birmingham, Birmingham, UK
  • 2. Stanford University
  • 3. Otto-von-Guericke-University Magdeburg, Germany
  • 4. Microsoft Research, Montréal, Québec, Canada
  • 5. UC San Diego
  • 6. MIT
  • 7. Center for Open Neuroscience, Dartmouth College
  • 8. Dartmouth College: Hanover, NH, United States
  • 9. Wellcome Centre for Integrative Neuroimaging, University of Oxford, UK
  • 10. University of Washington: Seattle, WA, United States
  • 11. MIT, HMS
  • 12. Athena EPI, Inria Sophia-Antipolis
  • 13. Institute of Neuroinformatics, ETH/University of Zurich
  • 14. Deptartment of Radiology, University of Cincinnati College of Medicine, Cincinnati, OH
  • 15. Harvard University - Psychology
  • 16. Department of Computer Science, Aalto University, Espoo, Finland and Department of Neuroscience, Imaging and Clinical Sciences, University G. D'Annunzio, Chieti, Italy
  • 17. The University of Washington eScience Institute
  • 18. CEA
  • 19. Montreal Neurological Institute and Hospital
  • 20. Department of Psychology, University of California Davis, CA, USA
  • 21. Berkeley Institute for Data Science, UC Berkeley
  • 22. CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
  • 23. Center for Magnetic Resonance Research, University of Minnesota
  • 24. Google
  • 25. Rotman Research Institute, Baycrest Health Sciences, Toronto, ON, Canada
  • 26. University of Geneva, Switzerland
  • 27. SRI International
  • 28. Department of Psychology, Stanford University, CA, USA
  • 29. University College London
  • 30. BrainSpec, Boston, MA
  • 31. INRIA
  • 32. Université de Sherbrooke
  • 33. Charite Universitatsmedizin Berlin, Germany
  • 34. McGill University
  • 35. University College London, London, UK
  • 36. University of California, San Francisco
  • 37. Department of Neuropsychiatry, University of Pennsylvania
  • 38. Hospital for Sick Children
  • 39. Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, MA
  • 40. TIB – Leibniz Information Centre for Science and Technology and University Library, Hannover, Germany
  • 41. National Technical University of Athens, Greece
  • 42. Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany
  • 43. National Institute of Mental Health and Neuro-Sciences, India

Description

New feature release in the 5.1.x series.

Most work on NiBabel so far has been by Matthew Brett (MB), Chris Markiewicz (CM), Michael Hanke (MH), Marc-Alexandre Côté (MC), Ben Cipollini (BC), Paul McCarthy (PM), Chris Cheng (CC), Yaroslav Halchenko (YOH), Satra Ghosh (SG), Eric Larson (EL), Demian Wassermann, Stephan Gerhard and Ross Markello (RM).

References like "pr/298" refer to github pull request numbers.

Enhancements
  • Make imagestats available with import nibabel (pr/1208) (Fabian Perez, reviewed by CM)
  • Use symmetric threshold for identifying unit quaternions on qform calculations (pr/1182) (CM, reviewed by MB)
  • Type annotations for nibabel.loadsave (pr/1213) and nibabel.spatialimages.SpatialImage APIs (pr/1179), nibabel.deprecated, nibabel.deprecator, nibabel.onetime and nibabel.optpkg modules (pr/1188), nibabel.volumeutils (pr/1189), nibabel.filename_parser and nibabel.openers (pr/1197) (CM, reviewed by Zvi Baratz)
Bug fixes
  • Require explicit overrides to write GIFTI files that contain data arrays with data types not permitted by the GIFTI standard (pr/1199) (CM, reviewed by Alexis Thual)
Maintenance
  • Move compression detection logic into a private nibabel._compression module, resolving unexpected errors from pyzstd. (pr/1212) (CM)
  • Improved consistency of docstring formatting (pr/1200) (Zvi Baratz, reviewed by CM)
  • Modernized README text (pr/1195) (Zvi Baratz, reviewed by CM)
  • Updated README badges to include package distributions (pr/1192) (Horea Christian, reviewed by CM)
  • Removed all dependencies on distutils and setuptools (pr/1190) (CM, reviewed by Zvi Baratz)
  • Add a _version.pyi stub to allow mypy to run without building nibabel (pr/1210) (CM)
New Contributors

Full Changelog: https://github.com/nipy/nibabel/compare/5.0.1...5.1.0

Files

nipy/nibabel-5.1.0.zip

Files (4.7 MB)

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Additional details

Related works

Is supplement to
https://github.com/nipy/nibabel/tree/5.1.0 (URL)