Published January 9, 2023 | Version v1
Journal article Open

Sharing GWAS summary statistics results in more citations - Extended search code

Creators

  • 1. 1 Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, Cambridge, United Kingdom. 2 Department of Medicine, University of Cambridge, Cambridge, United Kingdom.
  • 2. 1 Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, Cambridge, United Kingdom. 2 Department of Medicine, University of Cambridge, Cambridge, United Kingdom. 3 MRC Biostatistics Unit, University of Cambridge, Cambridge, United Kingdom.

Description

Data and code supporting "Sharing GWAS summary statistics results in more citations" - Extended search

This Zenodo repository contains the code used to identify publications that shared GWAS summary data outside of GWAS catalog, part of the analyses performed in Sharing GWAS summary statistics results in more citations paper, currently accepted at Communications Biology and available as a preprint on bioRxiv!

To run this code, do

rake retrieve_data # gets all the full text available
rake get_available # identifies papers with data available

For the rest of the code, see here for the Zenodo repository, or here for the GitHub repository.

 

Chris Wallace & Guillermo Reales
2023/01/09

Files

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Additional details

Funding

Engineering genomic features to better understand the molecular basis of immune mediated diseases and their treatment 220788
Wellcome Trust
Statistical ‘omics approaches to understanding autoimmune diseases MC_UU_00002/4
UK Research and Innovation

References

  • Reales and Wallace (2021) Sharing GWAS summary statistics results in more citations: evidence from the GWAS catalog. BiorXiv. doi:10.1101/2022.09.27.509657