Published November 12, 2021 | Version v2.2.0
Software Open

QCTOOL software source code, version 2.2.0

Creators

  • 1. Wellcome Centre for Human Genetics, University of Oxford

Description

This package contains a snapshot of the QCTOOL package source code repository, version 2.2.0.  The most recent version of the code can be found at https://code.enkre.net/qctool and/or https://github.com/gavinband/qctool.  The repository contains QCTOOL, HPTEST, LDBIRD, INTHINNERATOR and other software.  See https://code.enkre.net/qctool for links to full documentation.

(Please note a working development toolset, including the gcc or llvm C++ compiler, and python is required to compile this package.  The sequence

./waf configure --prefix=/path/to/installation/directory
./waf install

Can be used to compile and install the tools.  See https://code.enkre.net/qctool for full details.)

 

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Additional details

References

  • Band, G. et al, "The protective effect of sickle cell haemoglobin against severe malaria depends on parasite genotype", bioRxiv (2021)
  • MalariaGEN, "Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania", Nature Communications (2019)
  • MalariaGEN, "A novel locus of resistance to severe malaria in a region of ancient balancing selection", Nature (2015)