Published May 25, 2018 | Version v1
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Eight empirical phylogenetic datasets analysed in Rota et al.

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  • 1. Lund University

Description

Eight empirical phylogenetic datasetes analysed in Rota et al. study "A simple method for data partitioning based on relative evolutionary rates". All eight datasets are given in the phylip format with the alignment followed by partitions defined to correspond to the best partitioning strategy as described in the study. These are the datasets: Arctina, Calisto, Coenonymphina, Choreutidae, Geometridae, Morpho, Noctuidae, and Pieridae. The datasets have been modified from their published versions to reduce the amount of missing data. The details are in the paper.

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References

  • Rönkä K, Mappes J, Kaila L, and Wahlberg N. 2016. Putting Parasemia in its phylogenetic place: a molecular analysis of the subtribe Arctiina (Lepidoptera). Systematic Entomology 41:844-853. 10.1111/syen.12194
  • Matos-Maravi P, Aguila RN, Pena C, Miller JY, Sourakov A, and Wahlberg N. 2014. Causes of endemic radiation in the Caribbean: evidence from the historical biogeography and diversification of the butterfly genus Calisto (Nymphalidae: Satyrinae: Satyrini). BMC Evolutionary Biology 14. 10.1186/s12862-014-0199-7
  • Rota J, and Wahlberg N. 2012. Exploration of data partitioning in an eight-gene data set: phylogeny of metalmark moths (Lepidoptera, Choreutidae). Zoologica Scripta 41:536-546. 10.1111/j.1463-6409.2012.00551.x
  • Kodandaramaiah U, Peña C, Braby MF, Grund R, Müller CJ, Nylin S, and Wahlberg N. 2010. Phylogenetics of Coenonymphina (Nymphalidae: Satyrinae) and the problem of rooting rapid radiations. Molecular Phylogenetics and Evolution 54:386-394. 10.1016/j.ympev.2009.08.012
  • Sihvonen P, Mutanen M, Kaila L, Brehm G, Hausmann A, and Staude HS. 2011. Comprehensive molecular sampling yields a robust phylogeny for geometrid moths (Lepidoptera: Geometridae). PlosOne 6:e20356. 10.1371/journal.pone.0020356
  • Penz CM, Devries PJ, and Wahlberg N. 2012. Diversification of Morpho butterflies (Lepidoptera, Nymphalidae): a re-evaluation of morphological characters and new insight from DNA sequence data. Systematic Entomology 37:670-685. 10.1111/j.1365-3113.2012.00636.x
  • Zahiri R, Lafontaine D, Schmidt C, Holloway JD, Kitching IJ, Mutanen M, and Wahlberg N. 2013. Relationships among the basal lineages of Noctuidae (Lepidoptera, Noctuoidea) based on eight gene regions. Zoologica Scripta 42:488-507. 10.1111/zsc.12022
  • Wahlberg N, Rota J, Braby MF, Pierce NP, and Wheat CW. 2014. Revised systematics and higher classification of pierid butterflies (Lepidoptera: Pieridae) based on molecular data. Zoologica Scripta 43:641-650. 10.1111/zsc.12075
  • Rota J, Malm T, Chazot N, Peña C, Wahlberg N. A simple method for data partitioning based on relative evolutionary rates. PeerJ. in review