There is a newer version of the record available.

Published October 19, 2023 | Version v1.0.3
Software Open

JonathonMifsud/BatchArtemisSRAMiner: v1.0.3

Description

  • update diamond/2.0.9 -> diamond/2.1.6 across diamond blast scripts
  • increase JCOM_pipeline_blastxRVDB default memory 60GB to 120GB to handle AGRF sized libs better
  • JCOM_pipeline_blastxRVDB diamond -k5 changed to -k1 as we extra alignments are needed in an initial blast
  • JCOM_pipeline_blastxRVDB diamond -b1 changed to -b2 (the default) to utilise the extra memory we give it
  • JCOM_pipeline_blastxRVDB add --iterate so that diamond does an initial pass with low sens than moves to --ultra-sensitive. This should improve mem and time.

Full Changelog: https://github.com/JonathonMifsud/BatchArtemisSRAMiner/compare/v1.0.2...v1.0.3

Files

JonathonMifsud/BatchArtemisSRAMiner-v1.0.3.zip

Files (218.8 kB)

Name Size Download all
md5:68308de3b29db728cce7530771b2a6e4
218.8 kB Preview Download

Additional details

Related works