Published October 19, 2023
| Version v1.0.3
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JonathonMifsud/BatchArtemisSRAMiner: v1.0.3
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Description
- update diamond/2.0.9 -> diamond/2.1.6 across diamond blast scripts
- increase JCOM_pipeline_blastxRVDB default memory 60GB to 120GB to handle AGRF sized libs better
- JCOM_pipeline_blastxRVDB diamond -k5 changed to -k1 as we extra alignments are needed in an initial blast
- JCOM_pipeline_blastxRVDB diamond -b1 changed to -b2 (the default) to utilise the extra memory we give it
- JCOM_pipeline_blastxRVDB add --iterate so that diamond does an initial pass with low sens than moves to --ultra-sensitive. This should improve mem and time.
Full Changelog: https://github.com/JonathonMifsud/BatchArtemisSRAMiner/compare/v1.0.2...v1.0.3
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JonathonMifsud/BatchArtemisSRAMiner-v1.0.3.zip
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Additional details
Related works
- Is supplement to
- Software: https://github.com/JonathonMifsud/BatchArtemisSRAMiner/tree/v1.0.3 (URL)