Compound Heterozygous VSX2 Mutation Causing Bilateral Anophthalmia in a Consanguineous Egyptian Family

Purpose: To report the clinical and genetic study of a child with bilateral anophthalmia. Methods: A 14-year-old Egyptian boy, born from consanguineous parents, underwent a general and a full ophthalmological examination. Mutation screen of the A/M genes with recessive inheritance was done stepwise and DNA was analyzed by Sanger sequencing. Results: Bilateral anophthalmia, arachnodactyly of the feet and high arched palate were observed on general examination. The parents were first cousins and healthy. Sequencing analysis revealed a novel compound heterozygous mutation in one of the copy of exon 2 of VSX2 and a possible deletion of at least exon 2 on the other allele. Conclusions: A compound heterozygous VSX2 mutation associated with anophthalmia was identified in a patient from an Egyptian consanguineous family. This report brings the number of VSX2 mutation in anophthalmia/ microphthalmia (A/M) to 13. Functional consequences of the reported changes still need to be characterized, as well as the percentage of A/M caused by mutations in the VSX2 gene. This family also shows that despite consanguinity, heterozygous mutations can also happen and one should not restrict the molecular analysis to homozygous mutations.


Introduction
Anophthalmia (A) is a rare and severe ocular malformation characterized by the absence of one or both eye at birth with absent vision [1]. Unilateral anophthalmia is often associated with microphthalmia (M), which is characterized by a small eye. Together, anophthalmia/microphthalmia (A/M) have a prevalence of 1 per 10,000 cases per birth, microphthalmia being more frequent [1]. In more than 50% of affected patients, limbs, musculoskeletal, or craniofacial anomalies have been reported [2]. Non-syndromic A/M is often associated with other ocular anomalies such as colobomas, cysts, cataracts, microcornea or sclerocornea. To date, the underlying genetic cause is identifiable in approximately 25 to 30% of A/M patients as chromosomal aberrations or monogenic mutations and in up to 80% of severe anophthalmia with colobomas as monogenic mutations [2,3]. Several genes of A/M are related with autosomal-dominant inheritance and include GDF6, BMP4 OTX2, and SOX2 [4].
So far, twelve VSX2 mutations have been identified in 21 probands from 14 consanguineous families descending from Arabic countries or neighbouring regions [11,[15][16][17][18][19][20]. Different ocular phenotypes have been described in these 14 families ranging from severe anophthalmia to microphthalmia with or without additional ocular features such as Clinical & Experimental Ophthalmology colobomas, cataracts, or optic nerve hypoplasia for example. Extraocular features have been described in one report so far as developmental delay with behavioural problems, autism, cryptorchidism, ovarian defects, limb anomaly and hearing impairment [18].
In this study, a novel compound heterozygous VSX2 mutation has been identified in a patient of Egyptian origin affected with bilateral anophthalmia. We further expand the clinical and genetic description of A/M caused by VSX2 that has very few alleles identified to date related to A/M.

Methods
The ethic board of the University of Alexandria, Egypt, approved this study and informed consent was obtained from the parents of the family. The study was performed in adherence to the tenets of the declaration of Helsinki (1983 Revision).

Clinical examination
A 14-year-old boy from an Egyptian consanguineous family underwent full medical examination. Pregnancy history of the mother, antenatal and postnatal development history of the child and family history were taken. A family pedigree was drawn ( Figure 1). Growth, skull, face, chest, heart, abdomen, uro-genital, skeletal system, nervous system and skin were included in the general medical examination. A complete ophthalmic examination with an echography of both orbits was performed. History of parents' health was taken and eye examination performed.

Genetic analysis
The genetic analysis was performed in the 14-year-old boy and his parents. Genomic DNA was extracted from peripheral blood using the standard procedures. Mutation screen of the A/M genes with recessive inheritance was done stepwise, starting with ALDH1A3, RAX, and VSX2. The five exons and exon-intron junctions of VSX2 were screened by direct sequencing after PCR amplification. PCR products were amplified using 20 ng of genomic DNA in a 20 μl reaction mixture (10 μl master-mix, 5 μl H 2 O, 1.5 μl of forward primer and 1.5 μl reverse primer). The primers were designed by using Primer3 software (http://primer3.wi.mit.edu/) ( Table 1). The various amplicons were directly sequenced as previously described [6].

Results
Bilateral anophthalmia was diagnosed in the 14 year old boy, associated with narrow palpebral fissure and large upper eyebrows (Figures 2A and 2B). Orbital echography confirmed the diagnosis and excluded orbital cysts remnants. The complete medical examination revealed a high arched palate and arachnodactyly of the toes ( Figure  2C). No other malformations were present. The patient was born at term after an uneventful pregnancy. Neuropsychological, motor development and growth parameters were normal. The parents were both healthy, had no ocular anomalies and family history was free.
The pedigree of the family suggested an autosomal recessive inheritance ( Figure 1). Sequencing analysis of all VSX2 exons revealed a potential homozygous mutation in exon 2 of the patient, [c.422delA], that resulted in a theoretical frameshift and the generation of termination codon 19 amino acids downstream (p.N141Ifs*20) ( Figure  3A). In fact, based on the analysis of the parents, this mutation was hemizygous in the affected boy.  The mother has a wildtype sequence. As the mother does not show a heterozygous sequence, she must have a deletion of at least exon 2 of VSX2. C: The father is heterozygous for the deletion.

Discussion
VSX2 is a homeobox gene and a member of the paired-like CVC gene family which are consisted of a pair homeodomain and an additional conserved region, called the CVC domain [13]. VSX2 is one of the earliest specific markers of the neuroretinal lineage and is expressed in neuroretinal pluripotent cells and late-born bipolar cells [21]. It is strongly conserved in vertebrates and zebrafish [1,2]. Passini et al. [13] worked on zebrafish eye development to analyse the possible role of Vsx2. It is variously expressed at different embryonic stages with an enhanced and restrictive function that, finally, leads to a normal developed eye. Recently, Phillips et al. [21] revealed the multiple roles of VSX2 that included proliferation, cell fate and differentiation. Therefore, it is not surprising that mutations in VSX2 lead to malformations due to embryonic perturbation of the ocular program [22]. Systemic malformations are not explained by ocular expression analyses.
Only twelve mutations in VSX2 have been identified in autosomal recessive A/M, so far (Table 2). When screening large series, VSX2 mutations seem to account for a small proportion of A/M reaching a maximum of 2% [11]. Six of the reported mutations are thought to cause loss of function and three other interestingly affect the VSX2 CVC domain with a « hotspot » at Arg200 [11,17,18]. From a clinical point of view, all the described patients with identified VSX2 mutations had A/M associated with colobomas. Several cases had in addition cataracts or other ocular anomalies (Table 2). Of the latter, only one patient, of Afghan origin, was described with globe remnants on MRI and a homozygous nonsense p.Arg200* mutation (Table 2) [10]. This girl had several non-ocular anomalies, including microcephaly, moderate learning difficulties, and underdeveloped optic nerves and chiasm [10]. All but one report of VSX2 mutations were associated with only ocular phenotypes, the exception was made by Iseri et al. [18] (Table 2) who described extraocular features in different A/M patients, including the Afghan girl described above. No definite causative relationship between the non-ocular features and the VSX2 mutation has been demonstrated.
In the present study, we identified new compound heterozygous VSX2 mutations causing severe bilateral anophthalmia. To our knowledge, this deletion in the VSX2 gene [c.422delA; p.N141Ifs *19] localized in exon 2 has never been described before. Both mutations may generate loss of function, either by nonsense-mediated decay or by shorter VSX2 proteins.  The 14-year-old boy we studied did not harbour any globe remnants on orbital echography, no such case has been described to date so that it represents the most severe ocular phenotype described in association with a VSX2 mutation. Narrow palpebral fissure and large upper eyebrows (Figures 2A, B) have been seen in several Egyptian A/M patients before and may likely be related to the lack of globes [6]. In addition we observed clinically an arachnodactyly of the toes ( Figure 2C) that is very pronounced in this patient. Such a phenotype has not been reported before and the only other report of a limb anomaly refers to an Iranian patient with the p.Leu84SerfsX57 mutation, who also showed a left leg length discrepancy of 2 cm and tapering fingers. She later developed mild insulin and iron deficiency, and ovarian problems as well [18]. It is of interest to note that the case we describe as well as the Iranian girl could represent limb anomalies often associated with A/M, despite the fact that the causative effect of the VSX2 mutation cannot be unequivocally assessed. The present report suggests that VSX2 mutations may not only affect the ocular area as thought to date, considering the predominant expression of VSX2 in the neuroretinal lineage, but also other organs [11]. Finally, because different VSX2 mutations can generate similar phenotypes (Table 2), and different phenotypes can be caused by identical mutations, it is difficult to establish genotype-phenotype correlations. More studies and reports are needed, especially of cases with VSX2 residual function.
All VSX2 mutations reported so far, including the present one, are in families of Middle-East origins or neighbouring countries, namely Pakistan and Afghanistan (Table 2). Thus it has been suggested that VSX2 mutations were more frequent or specific to Middle-East and South Asian background origins [5,[16][17][18]. Nevertheless, when screening this gene in exclusively consanguineous A/M kindred from unspecific ethnic origin, the rate of VSX2 mutations is higher, and varies from 15% to 33% [5,18]. VSX2 mutations may be more frequent than expected and are to date related only to recessive A/M as confirmed by the present report. High rate of consanguinity may explain the higher frequency of VSX2 mutations in Middle-Eastern than in European patients, rather than a shared ancestry. Of note is that despite consanguinity, compound heterozygosity may be present as reported here and by Chassaing et al. [20] and one should not restrict the molecular analysis to homozygous mutations only for VSX2.
In conclusion, the present study identified a compound heterozygous mutations including two deletions in VSX2, a single nucleotide and a whole exon that have never been described before, in a patient with severe bilateral anophthalmia. This study expands the number of described VSX2 mutations causing A/M to 12 and describes the most severe case of A/M reported to date, in association with the first report of associated arachnodactyly. Definite causality of VSX2 for the non-ocular phenotype cannot yet be assessed but clinicians should be aware of this eventuality. The present study shows that despite consanguinity, compound heterozygosity may be present and one should not restrict the molecular analysis to homozygous mutations only.