J Appl Biomed 2:57-69, 2004 | DOI: 10.32725/jab.2004.007

The nucleolus: functional organization and assembly

Danièle Hernandez-Verdun
Institut Jacques Monod, Paris, France

The nucleolus is a large nuclear domain generated by the act of building ribosomes. It illustrates the compartmentation of the nuclear functions, since it is in the nucleolus that transcription of the ribosomal genes, maturation and processing of the 47S ribosomal RNAs (rRNAs) into 18S, 5.8S and 28S rRNA, and almost complete assembly of the 40S and 60S ribosome subunits take place. The shape, size and organization of the nucleoli vary with their activity. Nuleolar activity is a cell cycle dependent-process. In electron microscopy, the nucleolus exhibits three main components: fibrillar centers (FCs), a dense fibrillar component (DFC) and a granular component (GC), corresponding to different steps of ribosome biogenesis. The steady state between transcription, processing and export of ribosomal subunits engenders this organization. Conversely, inactivation or blockage of one of these processes modifies the organization of the nucleolus and ultimately induces nucleolar disassembly. The nucleolus is also a plurifunctional domain, a key partner of chromatin architecture in the nucleus and it plays a crucial role in several cellular functions in addition to ribosome production.
The nucleolus is assembled at the end of mitosis, is active during interphase, and disassembled in prophase. The nucleolar transcription and processing machineries are inherited from parental to daughter cells through mitosis. The polymerase I (pol I) transcription machinery is repressed during mitosis although assembled with ribosomal genes. Repression of pol I transcription is achieved at the end of prophase and is maintained during mitosis through phosphorylation of transcription factors by the cyclin-dependent kinase (CDK) 1. The nucleolar processing machineries relocalize from the nucleolus towards the periphery of all chromosomes until telophase and this chromosome association depends on CDK1 activity. As a consequence of natural inhibition of CDK1 activity, pol I transcription is restored in telophase. The processing machineries are recruited to the sites of rDNA transcription after a temporary transit in foci known as prenucleolar bodies.
In conclusion, the behavior of the nucleolus illustrates the fact that the dynamics of nuclear organization are integrated in a network of interactions and controls that is largely dependent on the coordination of cell cycle controls.

Keywords: nucleolus; cell cycle; dynamics; organization; nuclear domain; ribosome

Received: May 23, 2003; Published: July 31, 2004  Show citation

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Hernandez-Verdun D. The nucleolus: functional organization and assembly. J Appl Biomed. 2004;2(2):57-69. doi: 10.32725/jab.2004.007.
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References

  1. Andersen J.S., C.E. Lyon, A.H. Fox, A.K.L. Leung, Y.W. Lam, H. Steen, M. Mann, A. I. Lamond: Directed proteomic analysis of the human nucleolus. Curr. Biol. 12: 1-11, 2002. Go to original source... Go to PubMed...
  2. Bell P., M.C. Dabauvalle, U. Scheer: In vitro assembly of prenucleolar bodies in Xenopus egg extract. J. Cell Biol. 118: 1297-1304, 1992. Go to original source... Go to PubMed...
  3. Beven A.F., R. Lee, M. Razaz, D.J. Leader, J.W.S. Brown, P.J. Shaw: The organization of ribosomal RNA processing correlates with the distribution of nucleolar snRNAs. J. Cell Sci. 109: 1241-1251, 1996. Go to original source... Go to PubMed...
  4. Biggiogera M., M. Malatesta, S. Abolhassani-Dadras, F. Amalric, L.I. Rothblum, S. Fakan: Revealing the unseen: the organizer of the nucleolus. J. Cell Sci. 17: 3199-3205, 2001. Go to original source...
  5. Busch H. and K. Smetana: The nucleus of cancer cells. In H. Busch (ed), The Molecular Biology of Cancer. Academic Press, New York 1974, pp. 41-80. Go to original source...
  6. Carmo-Fonseca M., L. Mendes-Soares, I. Campos: To be or not to be in the nucleolus. Nature Cell Biol. 2: 107-112, 2000. Go to original source... Go to PubMed...
  7. Chubb J.R., S. Boyle, P. Perry, W.A. Bickmore: Chromatin motion is constrained by association with nuclear compartments in human cells. Curr. Biol. 12: 439-445, 2002. Go to original source... Go to PubMed...
  8. Cmarko D., P.J. Verschure, L.I. Rothblum, D. Hernandez-Verdun, F. Amalric, R. van Driel, S. Fakan: Ultrastructural analysis of nucleolar transcription in cells microinjected with 5-bromo-UTP. Histochem. Cell Biol. 113: 181-187, 2000. Go to original source... Go to PubMed...
  9. Dousset T., C. Wang, C. Verheggen, D. Chen, D. Hernandez-Verdun, S. Huang: Initiation of nucleolar assembly is independent of RNA polymerase I transcription. Mol. Biol. Cell 11: 2705-2717, 2000. Go to original source... Go to PubMed...
  10. Dundr M., T. Misteli, M.O.J. Olson: The dynamics of postmitotic reassembly of the nucleolus. J. Cell Biol. 150: 433-446, 2000. Go to original source... Go to PubMed...
  11. Dundr M. and M.O.J. Olson: Partially processed pre-rRNA is preserved in association with processing components in nucleolus derived foci during mitosis. Mol. Biol. Cell 9: 2407-2422, 1998. Go to original source... Go to PubMed...
  12. Fan H. and S. Penman: Regulation of synthesis and processing of nucleolar components in metaphase-arrested cells. J. Mol. Biol. 59: 27-42, 1971. Go to original source... Go to PubMed...
  13. Fatica A. and D. Tollervey: Making ribosomes. Curr. Opin. Cell Biol. 14: 313-318, 2002. Go to original source... Go to PubMed...
  14. Fomproix N., J. Gébrane-Younes, D. Hernandez-Verdun: Effects of anti-fibrillarin antibodies on building of functional nucleoli at the end of mitosis. J. Cell Sci. 111: 359-372, 1998. Go to original source... Go to PubMed...
  15. Gautier T., N. Fomproix, C. Masson, M.C. Azum-Gélade, N. Gas, D. Hernandez-Verdun: Fate of specific nucleolar perichromosomal proteins during mitosis: Cellular distribution and association with U3 snoRNA. Biol. Cell 82: 81-93, 1994. Go to original source... Go to PubMed...
  16. Gébrane-Younès J., N. Fomproix, D. Hernandez-Verdun: When rDNA transcription is arrested during mitosis, UBF is still associated with non-condensed rDNA. J. Cell Sci. 110: 2429-2440, 1997. Go to original source... Go to PubMed...
  17. Gerlich D., J. Beaudouin, B. Kalbfuss, N. Daigle, R. Eils, J. Ellenberg: Global chromosome positions are transmitted through mitosis in mammalian cells. Cell 112: 751, 2003. Go to original source... Go to PubMed...
  18. Goessens G.: Nucleolar structure. Int. Rev. Cytol. 87: 107-158, 1984. Go to original source... Go to PubMed...
  19. Granick D.: Nucleolar necklaces in chick embryo fibroblast cells. I. Formation of necklaces by dichlororibobenzimidazole and other adenosine analogues that decrease RNA synthesis and degrade preribosomes. J. Cell Biol. 65: 398-417, 1975a. Go to original source... Go to PubMed...
  20. Granick D.: Nucleolar necklaces in chick embryo fibroblast cells. II. Microscope observations of the effect of adenosine analogues on nucleolar necklace formation. J. Cell Biol. 65: 418-427, 1975b. Go to original source... Go to PubMed...
  21. Haaf T. and D.C. Ward: Inhibition of RNA polymerase II transcription causes chromatin decondensation, loss of nucleolar structure, and dispersion of chromosomal domains. Exp. Cell Res. 224: 163-173, 1996. Go to original source... Go to PubMed...
  22. Hadjiolov A.A.: The nucleolus and ribosome biogenesis. In M. Alfert, W. Beermann, L. Goldstein, K.R. Porter, P. Sitte, (eds) : Cell Biology Monographs, Vol. 12, Springer-Verlag, Wien 1985. Go to original source...
  23. Harnpicharnchai P., J. Jakovljevic, E. Horsey, T. Miles, J. Roman, M. Rout, D. Meagher, B. Imai, Y. Guo, C.J. Brame, J. Shabanowitz, D.F. Hunt, J.L. Woolford: Composition and functional characterization of yeast 66S ribosome assembly intermediates. Mol. Cell 8: 505-515, 2001. Go to original source... Go to PubMed...
  24. Heix J., A. Vente, R. Voit, A. Budde, T.M. Michaelidis, I. Grummt: Mitotic silencing of human rRNA synthesis: inactivation of the promoter selectivity factor SL1 by cdc2/cyclin B-mediated phosphorylation. EMBO J. 17: 7373-7381, 1998. Go to original source... Go to PubMed...
  25. Hernandez-Verdun D., C.A. Bourgeois, M. Bouteille: Simultaneous nucleologenesis in daughter cells during late telophase. Bio Cell 37: 1-4, 1980.
  26. Hozak P., J.T. Novak, K. Smetana: Three-dimensional reconstructions of nucleolus-organizing regions in PHA-stimulated human lymphocytes. Biol. Cell 66: 225-233, 1989. Go to original source... Go to PubMed...
  27. Jiménez-Garcia L.F., M. de L. Segura-Valdez, R.L Ochs, L.I. Rothblum, R. Hannan, D.L. Spector: Nucleologenesis: U3 snRNA-containing prenucleolar bodies move to sites of active pre-rRNA transcription after mitosis. Mol. Biol. Cell 5: 955-966, 1994. Go to original source... Go to PubMed...
  28. Junéra H. R., C. Masson, G. Géraud, D. Hernandez-Verdun: The three-dimensional organization of ribosomal genes and the architecture of the nucleoli vary with G1, S and G2 phases. J. Cell Sci. 108: 3427-3441, 1995. Go to original source... Go to PubMed...
  29. Junéra H.R., C. Masson, G. Géraud, J. Suja, D. Hernandez-Verdun: Involvement of in situ conformation of ribosomal genes and selective distribution of UBF in rRNA transcription. Mol. Biol. Cell 8: 145-156, 1997. Go to original source... Go to PubMed...
  30. Le Panse S., C. Masson, L. Héliot, J.-M. Chassery, H. R. Junéra, D. Hernandez-Verdun: 3-D organization of single ribosomal transcription units after DRB inhibition of RNA polymerase II transcription. J. Cell Sci. 112: 2145-2154, 1999. Go to original source... Go to PubMed...
  31. Leung A.K.L. and A.I. Lamond: In vivo analysis of NHPX reveals a novel nucleolar localization pathway involving a transient accumulation in splicing speckles. J. Cell Biol. 157: 615-629, 2002. Go to original source... Go to PubMed...
  32. McClintock B.: The relation of particular chromosomal element to the development of the nucleoli in Zea mays. Z. Zellforsch. mikrosk. Anat. 21: 294-328, 1934. Go to original source...
  33. Mélèse T. and Z. Xue: The nucleolus: an organelle formed by, the act of buiding a ribosome. Curr. Opin. Cell Biol. 7: 319-324, 1995. Go to original source... Go to PubMed...
  34. Misteli T.: Protein dynamics: implications for nuclear architecture and gene expression. Science 291: 843-847, 2001. Go to original source... Go to PubMed...
  35. Moyne G. and J. Garrido: Ultrastructural evidence of mitotic perichromosomal ribonucleoproteins in hamster cells. Exp. Cell Res. 98: 237-247, 1976. Go to original source... Go to PubMed...
  36. Nissan T.A., J. Bassler, E. Petfalski, D. Tollervey, E. Hurt: 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm. EMBO J. 21: 5539-5547, 2002. Go to original source... Go to PubMed...
  37. Olson M.O.J., M. Dundr, A. Szebeni: The nucleolus: an old factory with unexpected capabilities. Trends Cell Biol. 10: 189-196, 2000. Go to original source... Go to PubMed...
  38. Pébusque M.J. and R. Seïte: Electron microscopic studies of silver-stained proteins in nucleolar organizer regions: location in nucleoli of rat sympathetic neurons during light and dark periods. J. Cell Sci. 51: 85-94, 1981. Go to original source... Go to PubMed...
  39. Pederson T.: The plurifunctional nucleolus. Nucl. Acids Res. 26: 3871-3876, 1998. Go to original source... Go to PubMed...
  40. Phair R.D., and T. Misteli: High mobility of proteins in the mammalian cell nucleus. Nature 404: 604-609, 2000. Go to original source... Go to PubMed...
  41. Pinol-Roma S.: Association of nonribosomal nucleolar proteins in ribonucleoprotein complexes during interphase and mitosis. Mol. Biol. Cell 10: 77-90, 1999. Go to original source... Go to PubMed...
  42. Prescott D.M. and M.A. Bender : Synthesis of RNA and protein during mitosis in mammalian tissue culture cells. Exp. Cell Res. 26: 260-268, 1962. Go to original source... Go to PubMed...
  43. Puvion-Dutilleul F., J.-P. Bachellerie, E. Puvion Nucleolar organization of HeLa cells as studied by in situ hybridization. Chromosoma 100: 395-409, 1991. Go to original source... Go to PubMed...
  44. Puvion-Dutilleul F., E. Puvion, J.-P. Bachellerie: Early stages of pre-rRNA formation within the nucleolar ultrastructure of mouse cells studied by in situ hybridization with 5'ETS leader probe. Chromosoma 105: 496-505, 1997. Go to original source... Go to PubMed...
  45. Roussel P., C. André, L. Comai, D. Hernandez-Verdun: The rDNA transcription machinery is assembled during mitosis in active NORs and absent in inactive NORs. J. Cell Biol. 133: 235-246, 1996. Go to original source... Go to PubMed...
  46. Savino T.M., J. Gébrane-Younès, J. De Mey, J.-B. Sibarita, D. Hernandez-Verdun: Nucleolar assembly of the rRNA processing machinery in living cells. J. Cell Biol. 153: 1097-1110, 2001. Go to original source... Go to PubMed...
  47. Scheer U. and R. Benavente: Functional and dynamic aspects of the mammalian nucleolus. BioEssays 12: 14-21, 1990. Go to original source... Go to PubMed...
  48. Scheer U. and R. Hock: Structure and function of the nucleolus. Curr. Opin. Cell Biol. 11: 385-390, 1999. Go to original source... Go to PubMed...
  49. Scheer U., B. Hügle, R. Hazan, K.M. Rose: Drug-induced dispersal of transcribed rRNA genes and transcriptional products: immunolocalization and silver staining of different nucleolar components in rat cells treated with 5,6-dichloro-ß-D-ribofuranosylbenzimidazole. J. Cell Biol. 99: 672-679, 1984. Go to original source... Go to PubMed...
  50. Scherl A., Y. Couté, C. Déon, A. Callé, K. Kindbeiter, J.-C.Sanchez, A. Greco, D. Hochstrasser, J.-J. Diaz: Functional proteomic analysis of human nucleolus. Molec. Biol. Cell 13: 4100-4109, 2002. Go to original source...
  51. Shaw P.J. and E.G. Jordan: The nucleolus. Annu. Rev. Cell Dev. Biol. 11: 93-121, 1995. Go to original source... Go to PubMed...
  52. Shou W., K.M. Sakamoto, J. Keener, K.W. Morimoto, E.E.Traverso, R. Azzam, G.J. Hoppe, R.M. Feldman, J.DeModena, D. Moazed, H. Charbonneau, M. Nomura, R..J. Deshaies: Net1 stimulates RNA polymerase I transcription and regulates nucleolar structure independently of controlling mitotic exit. Mol. Cell 8: 45-55, 2001. Go to original source... Go to PubMed...
  53. Sirri V., D. Hernandez-Verdun, P. Roussel: Cyclin-dependent kinases govern formation and maintenance of the nucleolus. J. Cell Biol. 156: 969-981, 2002. Go to original source... Go to PubMed...
  54. Sirri V., P. Roussel, D. Hernandez-Verdun: The mitotically phosphorylated form of the transcription termination factor TTF-1 is associated with the repressed rDNA transcription machinery. J. Cell Sci. 112: 3259-3268, 1999. Go to original source... Go to PubMed...
  55. Sirri V., P. Roussel, D. Hernandez-Verdun: In vivo release of mitotic silencing of ribosomal gene transcription does not give rise to precursor ribosomal RNA processing. J. Cell Biol. 148: 259-270, 2000. Go to original source... Go to PubMed...
  56. Snaar S., K. Wiesmeijer, A.G. Jochemsen, H.J. Tanke, R.W.Dirks: Mutational analysis of fibrillarin and its mobility in living human cells. J. Cell Biol. 151: 653-662, 2000. Go to original source... Go to PubMed...
  57. Thiry M. and G. Goessens: The nucleolus during the cell cycle. In Molecular Biology Intelligence Unit. Springer-Verlag, Heidelberg 1996.
  58. Thiry M. and L. Thiry-Blaise: Locating transcribed and non-transcribed rDNA spacer sequences within the nucleolus by in situ hybridization and immunoelectron microscopy. Nucleic Acids. Res. 19: 11-15, 1991. Go to original source... Go to PubMed...
  59. Trumtel S., I. Léger-Silvestre, P.-E. Gleizes, F. Teulières, N. Gas: Assembly and functional organization of the nucleolus: ultrastructural analysis of Saccharomyces cerevisiae mutants. Mol. Biol. Cell 11: 2175-2189, 2000. Go to original source... Go to PubMed...
  60. Tsai R.Y.L. and R.D.G. McKay: A nucleolar mechanism controlling cell proliferation in stem cells and cancer cells. Genes dev. 16: 2991-3003, 2002. Go to original source... Go to PubMed...
  61. Verheggen C., G. Almouzni, and D. Hernandez-Verdun: The ribosomal RNA processing machinery is recruited to the nucleolar domain before RNA polymerase I during Xenopus laevis development. J. Cell Biol. 149: 293-305, 2000. Go to original source... Go to PubMed...
  62. Visintin R. and A. Amon: The nucleolus: the magician's hat for cell cycle tricks. Curr. Opin. Cell Biol. 12: 372-377, 2000. Go to original source... Go to PubMed...
  63. Weisenberger D. and U. Scheer: A possible mechanism for the inhibition of ribosomal RNA gene transcription during mitosis. J. Cell Biol. 129: 561-575, 1995. Go to original source... Go to PubMed...