Skip to main content
Log in

The expression of the rpoE operon is fine-tuned by the internal rseAp promoter in Salmonella enterica serovar Typhimurium

  • Section Cellular and Molecular Biology
  • Published:
Biologia Aims and scope Submit manuscript

Abstract

Three promoters, located upstream of the rpoE gene encoding an extracytoplasmic sigma factor σ E, direct expression of the rpoE operon (rpoE, rseA, rseB, rseC) in Salmonella enterica serovar Typhimurium (S. Typhimurium). One of them, rpoEp3, has been found to be directly recognized by RNA polymerase containing sigma factor σ E. Using the Northern blot analysis we detected a complex pattern of transcripts indicating an internal promoter in the coding region of the rpoE gene. The promoter, rseAp, has been located by S1 mapping analysis. Its proposed −10 and −35 elements with 15 intervening nucleotides exhibited high similarity with the consensus sequence of σ E promoters, suggesting the direct dependence of rseAp upon σ E. Activity of rseAp increased towards stationary phase, after heat shock, cold shock, and in the presence of artificially induced rpoE expression, the conditions previously shown to activate σ E-dependent promoters. In vivo experiments revealed increase of the rseAp activity during growth and confirmed its clear dependence upon σ E. The proposed role of the internal rseAp promoter is to facilitate a feedback control of σ E level after the envelope stress is removed.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

Abbreviations

LB:

Luria-Bertani

TSP:

transcription start point

References

  • Ades S.E., Connolly L.E., Alba B.M. & Gross C.A. 1999. The Escherichia coli σ E-dependent extracytoplasmic stress response is controlled by the regulated proteolysis of an anti-σ factor. Genes Dev. 13: 2449–2461.

    Article  CAS  PubMed  Google Scholar 

  • Ades S.E., Grigorova I.L. & Gross C.A. 2003. Regulation of the alternative sigma factor σ E during initiation, adaptation, and shutoff of the extracytoplasmic heat shock response in Escherichia coli. J. Bacteriol. 185: 2512–2519.

    Article  CAS  PubMed  Google Scholar 

  • Alba B.M., Leeds J.A., Onufryk C., Lu C.Z. & Gross C.A. 2002. DegS and YaeL participate sequentially in the cleavage of RseA to activate the σ E-dependent extracytoplasmic stress response. Genes Dev. 16: 2156–2168.

    Article  CAS  PubMed  Google Scholar 

  • Ausubel F.M., Brent R., Kingston R.E., Moore D.O., Seidman J.S., Smith J.A. & Struhl K. 1995. Current Protocols in Molecular Biology. Wiley, New York.

    Google Scholar 

  • Campbell E.A., Tupy J.L., Gruber T.M., Wang S., Sharp M.M., Gross C.A. & Darst S.A. 2003. Crystal structure of Escherichia coli σ E with the cytoplasmic domain of its anti-σ RseA. Mol. Cell 11: 1067–1078.

    Article  CAS  PubMed  Google Scholar 

  • Cezairliyan B.O. & Sauer R.T. 2007. Inhibition of regulated proteolysis by RseB. Proc. Natl. Acad. Sci. USA 104: 3771–3776.

    Article  CAS  PubMed  Google Scholar 

  • Chaba R., Grigorova I.L., Flynn J.M., Baker T.A. & Gross C.A. 2007. Design principles of the proteolytic cascade governing the σ E-mediated envelope stress response in Escherichia coli: keys to graded, buffered, and rapid signal transduction. Genes Dev. 21: 124–136.

    Article  CAS  PubMed  Google Scholar 

  • De Las Penas A., Connolly L. & Gross C.A. 1997. The σ E-mediated response to extracytoplasmic stress in Escherichia coli is transduced by RseA and RseB, two negative regulators of σ E. Mol. Microbiol. 24: 373–385.

    Article  PubMed  Google Scholar 

  • Flynn J.M., Neher S.B., Kim Y.I., Sauer R.T. & Baker T.A. 2003. Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals. Mol. Cell 11: 671–683.

    Article  CAS  PubMed  Google Scholar 

  • Grigorova I.L., Chaba R., Zhong H.J., Alba B.M., Rhodius V., Herman H. & Gross C.A. 2004. Fine-tuning of the Escherichia coli σ E envelope stress response relies on multiple mechanisms to inhibit signal-independent proteolysis of the transmembrane anti-σ factor, RseA. Genes Dev. 18: 2686–2697.

    Article  CAS  PubMed  Google Scholar 

  • Heseith S.K. & Stocker B.A.D. 1981. Aromatic-dependent Salmonella typhimurium are non-virulent and effective as live vaccines. Nature 291: 238–239.

    Article  Google Scholar 

  • Humphreys S., Stevenson A., Bacon A., Weihardt A.B. & Roberts M. 1999. The alternative sigma factor, σ E, is critically important for the virulence of Salmonella typhimurium. Infect. Immun. 67: 1560–1568.

    CAS  PubMed  Google Scholar 

  • Koo M.S., Lee J.H., Rah S.Y., Yeo W.S., Lee J.W., Lee K.L, Koh Y.S., Kang S.O. & Roe J.H. 2003. A reducing system of the superoxide sensor SoxR in Escherichia coli. EMBO J. 22: 2614–2622.

    Article  CAS  PubMed  Google Scholar 

  • Kormanec J. 2001. Analyzing the developmental expression of σ factors with S1-nuclease mapping, pp. 481–494. In: Chein C.H. (ed.), Nuclease Methods and Protocols, Methods in Molecular Biology 160, Humana Press, Totowa, NJ.

    Chapter  Google Scholar 

  • Linn T. & St Pierre R. 1990. Improved vector system for constructing transcriptional fusions that ensures independent translation of lacZ. J. Bacteriol. 172: 1077–1084.

    CAS  PubMed  Google Scholar 

  • Maxam A.M. & Gilbert W. 1980. Sequencing end-labelled DNA with base specific chemical cleavages. Methods Enzymol. 65: 449–560.

    Article  Google Scholar 

  • Miller J.H. 1972. Experiments in Molecular Genetics, pp. 274–281. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

    Google Scholar 

  • Missiakas D., Mayer M.P., Lemaire M., Georgopoulos C. & Raina S. 1997. Modulation of the Escherichia coli σ E (RpoE) heatshock transcription-factor activity by the RseA, RseB and RseC proteins. Mol. Microbiol. 24: 355–371.

    Article  CAS  PubMed  Google Scholar 

  • Miticka H., Rowley G., Rezuchova B., Homerova D., Humphreys S., Farn J., Roberts M. & Kormanec J. 2003. Transcriptional analysis of the rpoE gene encoding extracytoplasmatic stress response sigma factor σ E in Salmonella enterica serovar Typhimurium. FEMS Microbiol. Lett. 226: 307–314.

    Article  CAS  PubMed  Google Scholar 

  • Raina S., Missiakas D. & Georgopoulos C. 1995. The rpoE gene encoding the σ E (σ 24) heat shock σ factor of Escherichia coli. EMBO J. 14: 1043–1055.

    CAS  PubMed  Google Scholar 

  • Rezuchova B. & Kormanec J. 2001. A two-plasmid system for identification of promoters recognized by RNA polymerase containing extracytoplasmic stress response σ E in Escherichia coli. J. Microbiol. Methods 45: 103–111.

    Article  CAS  PubMed  Google Scholar 

  • Rezuchova B., Miticka H., Homerova D., Roberts M. & Kormanec J. 2003. New members of the Escherichia coli σ E regulon identified by a two-plasmid system. FEMS Microbiol. Lett. 225: 1–7.

    Article  CAS  PubMed  Google Scholar 

  • Rhodius V.A., Suh W.C., Nonaka G., West J. & Gross C.A. 2006. Conserved and variable functions of the σ E stress response in related genomes. PLoS Biol. 4: e2.

    Article  PubMed  Google Scholar 

  • Rouviere P.E., De Las Penas A., Mecsas J., Lu C.Z., Rudd K.E. & Gross C.A. 1995. rpoE, the gene encoding the second heatshock σ factor, σ E, in Escherichia coli. EMBO J. 14: 1032–1042.

    CAS  PubMed  Google Scholar 

  • Rowley G., Spector M., Kormanec J. & Roberts M. 2006. Pushing the envelope: extracytoplasmic stress response in bacterial pathogens. Nature Rev. Microbiol. 4: 383–394.

    Article  CAS  Google Scholar 

  • Skovierova H., Rowley G., Rezuchova B., Homerova D., Lewis C., Roberts M. & Kormanec J. 2006. Identification of the σ E regulon of Salmonella enterica serovar Typhimurium. Microbiology 152: 1347–1359.

    Article  CAS  PubMed  Google Scholar 

  • Testerman T.L., Vazquez-Torres A., Xu Y., Jones-Carson J., Libby S.J. & Fang F.C. 2002. The alternative σ factor σ E controls antioxidant defences required for Salmonella virulence and stationary-phase survival. Mol. Microbiol. 43: 771–782.

    Article  CAS  PubMed  Google Scholar 

  • Walsh N.P., Alba B.M., Bose B., Gross C.A. & Sauer R.T. 2003. OMP peptide signals initiate the envelope-stress response by activating DegS protease via relief of inhibition mediated by its PDZ domain. Cell 113: 61–71.

    Article  CAS  PubMed  Google Scholar 

  • Wilken C., Kitzing K., Kurzbauer R., Ehrmann M. & Clausen T. 2004. Crystal structure of the DegS stress sensor: how a PDZ domain recognizes misfolded protein and activates a protease. Cell 117: 483–494.

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jan Kormanec.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Homerova, D., Rezuchova, B., Skovierova, H. et al. The expression of the rpoE operon is fine-tuned by the internal rseAp promoter in Salmonella enterica serovar Typhimurium. Biologia 65, 932–938 (2010). https://doi.org/10.2478/s11756-010-0115-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.2478/s11756-010-0115-6

Key words

Navigation