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Detection of an endogenous urinary biomarker associated with CYP2D6 activity using global metabolomics

    Jessica Tay-Sontheimer

    Department of Pharmaceutics, University of Washington, Seattle, WA, USA

    ,
    Laura M Shireman

    Department of Pharmaceutics, University of Washington, Seattle, WA, USA

    ,
    Richard P Beyer

    Center for Ecogenetics & Environmental Health, University of Washington, Seattle, WA, USA

    ,
    Taurence Senn

    Department of Pharmaceutics, University of Washington, Seattle, WA, USA

    ,
    Daniela Witten

    Department of Biostatistics, University of Washington, Seattle, WA, USA

    ,
    Robin E Pearce

    Division of Clinical Pharmacology, Toxicology & Therapeutic Innovation, Children's Mercy Hospitals & Clinics, Kansas City, MO, USA

    ,
    Andrea Gaedigk

    Division of Clinical Pharmacology, Toxicology & Therapeutic Innovation, Children's Mercy Hospitals & Clinics, Kansas City, MO, USA

    Department of Pediatrics, University of Missouri-Kansas City, Kansas City, MO, USA

    ,
    Cletus L Gana Fomban

    Department of Pharmaceutics, University of Washington, Seattle, WA, USA

    ,
    Justin D Lutz

    Department of Pharmaceutics, University of Washington, Seattle, WA, USA

    ,
    Nina Isoherranen

    Department of Pharmaceutics, University of Washington, Seattle, WA, USA

    ,
    Kenneth E Thummel

    Department of Pharmaceutics, University of Washington, Seattle, WA, USA

    ,
    Oliver Fiehn

    UC Davis Genome Center, University of California Davis, Davis, CA, USA

    ,
    J Steven Leeder

    Division of Clinical Pharmacology, Toxicology & Therapeutic Innovation, Children's Mercy Hospitals & Clinics, Kansas City, MO, USA

    Department of Pediatrics, University of Missouri-Kansas City, Kansas City, MO, USA

    &
    Yvonne S Lin

    *Author for correspondence:

    E-mail Address: yvonlin@uw.edu

    Department of Pharmaceutics, University of Washington, Seattle, WA, USA

    Published Online:https://doi.org/10.2217/pgs.14.155

    Aim: We sought to discover endogenous urinary biomarkers of human CYP2D6 activity. Patients & methods: Healthy pediatric subjects (n = 189) were phenotyped using dextromethorphan and randomized for candidate biomarker selection and validation. Global urinary metabolomics was performed using liquid chromatography quadrupole time-of-flight mass spectrometry. Candidate biomarkers were tested in adults receiving fluoxetine, a CYP2D6 inhibitor. Results: A biomarker, M1 (m/z 444.3102) was correlated with CYP2D6 activity in both the pediatric training and validation sets. Poor metabolizers had undetectable levels of M1, whereas it was present in subjects with other phenotypes. In adult subjects, a 9.56-fold decrease in M1 abundance was observed during CYP2D6 inhibition. Conclusion: Identification and validation of M1 may provide a noninvasive means of CYP2D6 phenotyping.

    Papers of special note have been highlighted as: • of interest; •• of considerable interest

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