Detection of an endogenous urinary biomarker associated with CYP2D6 activity using global metabolomics
Abstract
Aim: We sought to discover endogenous urinary biomarkers of human CYP2D6 activity. Patients & methods: Healthy pediatric subjects (n = 189) were phenotyped using dextromethorphan and randomized for candidate biomarker selection and validation. Global urinary metabolomics was performed using liquid chromatography quadrupole time-of-flight mass spectrometry. Candidate biomarkers were tested in adults receiving fluoxetine, a CYP2D6 inhibitor. Results: A biomarker, M1 (m/z 444.3102) was correlated with CYP2D6 activity in both the pediatric training and validation sets. Poor metabolizers had undetectable levels of M1, whereas it was present in subjects with other phenotypes. In adult subjects, a 9.56-fold decrease in M1 abundance was observed during CYP2D6 inhibition. Conclusion: Identification and validation of M1 may provide a noninvasive means of CYP2D6 phenotyping.
Papers of special note have been highlighted as: • of interest; •• of considerable interest
References
- 1 . Off-label drug use in pediatric patients. Clin. Pharmacol. Ther. 91(5), 796–801 (2012).
- 2 . Paediatric drug use with focus on off-label prescriptions at Swedish hospitals – a nationwide study. Acta Paediatr. 101(7), 772–778 (2012).
- 3 . Pediatric information in drug product labeling. JAMA 307(18), 1914–1915 (2012).
- 4 Improving pediatric dosing through pediatric initiatives: what we have learned. Pediatrics 121(3), 530–539 (2008).
- 5 . The problems in scaling adult drug doses to children. Arch. Dis. Child. 93(3), 207–211 (2008).
- 6 . Pharmacokinetic predictions in children by using the physiologically based pharmacokinetic modelling. Fundament. Clin. Pharmacol. 22(6), 579–587 (2008).
- 7 . Prediction of drug clearance in children from adults: a comparison of several allometric methods. Br. J. Clin. Pharmacol. 61(5), 545–557 (2006).
- 8 . Pediatric dose selection. Clin. Pharmacol. Ther. 87(3), 270–271 (2010).
- 9 . The in silico child: using simulation to guide pediatric drug development and manage pediatric pharmacotherapy. J. Clin. Pharmacol. 49(8), 889–904 (2009).
- 10 . Understanding the relative roles of pharmacogenetics and ontogeny in pediatric drug development and regulatory science. J. Clin. Pharmacol. 50(12), 1377–1387 (2010).• Discusses strategies of designing pediatric studies and understanding the relative roles of ontogeny and genetic variation for a given chemical entity.
- 11 . Developmental pharmacology of tramadol during infancy: ontogeny, pharmacogenetics and elimination clearance. Paediatr. Anaesth. 21(3), 266–273 (2011).
- 12 . Functional pharmacogenetics/genomics of human cytochromes P450 involved in drug biotransformation. Anal. Bioanal. Chem. 392(6), 1093–1108 (2008).
- 13 . Polymorphism of human cytochrome P450 2D6 and its clinical significance: Part I. Clin. Pharmacokinet. 48(11), 689–723 (2009).
- 14 . Polymorphism of human cytochrome P450 2D6 and its clinical significance: part II. Clin. Pharmacokinet. 48(12), 761–804 (2009).
- 15 Assessment of activity levels for CYP2D6*1, CYP2D6*2, and CYP2D6*41 genes by population pharmacokinetics of dextromethorphan. Clin. Pharmacol. Ther. 88(5), 643–651 (2010).
- 16 The Human Cytochrome P450 (CYP) Allele Nomenclature Database. www.cypalleles.ki.se/cyp2d6.htm.
- 17 . Complexities of CYP2D6 gene analysis and interpretation. Int. Rev. Psychiatry 25(5), 534–553 (2013).• Highlights the complexities of the CYP2D6 gene and the complications that may arise when interpreting phenotype from genotype.
- 18 Clinical Pharmacogenetics Implementation Consortium (CPIC) guidelines for codeine therapy in the context of cytochrome P450 2D6 (CYP2D6) genotype. Clin. Pharmacol. Ther. 91(2), 321–326 (2012).
- 19 . Challenges in CYP2D6 phenotype assignment from genotype data: a critical assessment and call for standardization. Curr. Drug Metabol. 15(2), 218–232 (2014).
- 20 . Pharmacogenomics of CYP2D6: molecular genetics, interethnic differences and clinical importance. Drug Metabol. Pharmacokinet. 27(1), 55–67 (2012).
- 21 . The CYP2D6 activity score: translating genotype information into a qualitative measure of phenotype. Clin. Pharmacol. Ther. 83(2), 234–242 (2008).•• Proposes the CYP2D6 activity score system which simplifies phenotype interpretation from genotype.
- 22 Variability in drug metabolizing enzyme activity in HIV-infected patients. Eur. J. Clin. Pharmacol. 66(5), 475–485 (2010).
- 23 CYP2D6 genotype and debrisoquine hydroxylation phenotype in Cubans and Nicaraguans. Pharmacogenomics J. 12(2), 176–183 (2012).
- 24 . Drug metabolizing enzyme activities versus genetic variances for drug of clinical pharmacogenomic relevance. Clin. Proteomics 8(1), 12 (2011).
- 25 . Fluoxetine and norfluoxetine mediated complex drug-drug interactions: in vitro to in vivo correlation of effects on CYP2D6, CYP2C19 and CYP3A4. Clin. Pharmacol. Ther. 95(6), 653–662 (2014).•• Primary analysis of the fluoxetine drug–drug interaction study from which adult urine samples were included in this study; includes demographic information and demonstrates potent CYP2D6 inhibition by fluoxetine in the study population.
- 26 . Screening for endogenous substrates reveals that CYP2D6 is a 5-methoxyindolethylamine O-demethylase. Pharmacogenetics 13(6), 307–319 (2003).•• In vitro study screening for endogenous substrates of CYP2D6 using recombinant CYP2D6, CYP2D6-transgenic mouse liver microsomes and human liver microsomes.
- 27 . Pinoline may be used as a probe for CYP2D6 activity. Drug Metabol. Dispos. 37(3), 443–446 (2009).
- 28 . Progesterone oxidation by cytochrome P450 2D isoforms in the brain. Endocrinology 142(9), 3901–3908 (2001).
- 29 . The endocannabinoid anandamide is a substrate for the human polymorphic cytochrome P450 2D6. J. Pharmacol. Exp. Ther. 327(2), 538–545 (2008).
- 30 . Anandamide oxidation by wild-type and polymorphically expressed CYP2B6 and CYP2D6. Drug Metabol. Dispos. 39(5), 782–788 (2011).• In vitro study of anandamide metabolism by wild-type and polymorphically expressed CYP2B6 and CYP2D6, suggesting that alterations in CYP2D6 activity may impact endocannabinoid system signaling.
- 31 Potential role of CYP2D6 in the central nervous system. Xenobiotica 43(11), 973–984 (2013).•• A metabolomic analysis that reports differences in several endogenous compounds between brain and cerebrospinal fluid of CYP2D6 transgenic and wild-type mice.
- 32 . Polymorphic dextromethorphan metabolism: co-segregation of oxidative O-demethylation with debrisoquin hydroxylation. Clin. Pharmacol. Ther. 38(6), 618–624 (1985).• Reports the now widely accepted urinary dextromethorphan metabolic ratio of 0.3 as the cut-off or antimode between CYP2D6 poor metabolizers and other phenotypes.
- 33 . CYP2D7–2D6 hybrid tandems: identification of novel CYP2D6 duplication arrangements and implications for phenotype prediction. Pharmacogenomics 11(1), 43–53 (2010).
- 34 Identification of novel CYP2D7–2D6 Hybrids: non-functional and functional variants. Front. Pharmacol. 1, 121 (2010).
- 35 . CYP2D6, SULT1A1 and UGT2B17 copy number variation: quantitative detection by multiplex PCR. Pharmacogenomics 13(1), 91–111 (2012).
- 36 Discovery of the nonfunctional CYP2D6 31 allele in Spanish, Puerto Rican, and US Hispanic populations. Eur. J. Clin. Pharmacol. 66(9), 859–864 (2010).
- 37 Ontogeny of dextromethorphan O- and N-demethylation in the first year of life. Clin. Pharmacol. Ther. 81(4), 510–516 (2007).
- 38 . XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal. Chem. 78(3), 779–787 (2006).
- 39 . Highly sensitive feature detection for high resolution LC/MS. BMC Bioinform. 9, 504 (2008).
- 40 gee: Generalized Estimation Equation solver. http://cran.r-project.org/web/packages/gee/index.html.
- 41 . An accelerated workflow for untargeted metabolomics using the METLIN database. Nat. Biotechnol. 30(9), 826–828 (2012).
- 42 METLIN Metabolite Database. http://metlin.scripps.edu.
- 43 HMDB: a knowledgebase for the human metabolome. Nucleic Acids Res. 37, D603–610 (2009).
- 44 The Human Metabolome Database. www.hmdb.ca.
- 45 . Metabolite profiling in human urine by LC-MS/MS: method optimization and application for glucuronides from dextromethorphan metabolism. J. Chromatogr. B Anal. Technol. Biomed. Life Sci. 871(2), 349–356 (2008).
- 46 . Common CYP2D6 polymorphisms affecting alternative splicing and transcription: long-range haplotypes with two regulatory variants modulate CYP2D6 activity. Hum. Mol. Genet. 23(1), 268–278 (2014).
- 47 . Essentials for starting a pediatric clinical study (1): Pharmacokinetics in children. J. Toxicol. Sci. 34(Suppl. 2), SP307–SP312 (2009).
- 48 Developmental changes in human liver CYP2D6 expression. Drug Metabol. Dispos. 36(8), 1587–1593 (2008).
- 49 1H NMR metabolomics study of age profiling in children. NMR Biomed. 22(8), 826–833 (2009).
- 50 . Regeneration of serotonin from 5-methoxytryptamine by polymorphic human CYP2D6. Pharmacogenetics 13(3), 173–181 (2003).
- 51 . Genomewide association studies and assessment of the risk of disease. N. Engl. J. Med. 363(2), 166–176 (2010).