Species
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Subgenera
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Lost genes
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Photosynthesis related genes
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Transcription and translation related genes
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Other genes
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tRNA genes
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C. erosa
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Grammica
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ndh, psaI, psaA-C, psbA-F,
psbH-L, psbN/T/Z, petA/B/D/G/L/N, rbcL
|
rpl23, rps15, rps16, rpo
|
ycf1, ycf3, ycf4, matK,
ccsA, cemA, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-CAU, trnI-GAU**, trnI-GAU**, trnK-UUU**, trnL-UAA, trnR-ACG, trnR-ACG, trnV-UAC**
|
C. boldinghii
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ndh, psaI, psaA-C, psbA-F, psbH-L,
psbT, psbZ, petA/B/D/G/L/N, rbcL, atpF
|
rpl23, rpl36, rpl32, rps14,
rps15, rps16, rpo
|
ycf1, ycf3, ycf4, matK,
ccsA, ycf15**
|
trnA-UGC****, trnG-GCC, trnG-UCC, trnI-CAU, trnI-GAU**, trnI-GAU**, trnK-UUU**, trnL-UAG, trnR-ACG**, trnV-UAC**
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C. strobilacea
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ndh, psaI, psaA-C, psaJ, psbA-F,
psbT, psbZ, psbH/J/K/L, petA/B/D/G/L/N, rbcL
|
rpl23, rpl32, rpl36, rps15,
rps16, rpo
|
ycf1, ycf3, ycf4, matK,
ccsA, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-CAU, trnI-GAU****, trnK-UUU**, trnL-UAA, trnR-ACG**, trnV-UAC**
|
C. carnosa
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ndh, psaI, petN, psbM
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rpl23, rpl32, rps15, rps16, rpo
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ycf1, matK, ccsA, ycf15**
|
trnA-UGC****, trnC-GCA, trnD-GUC, trnE-UUC, trnG-UCC**, trnI-CAU, trnI-GAU****, trnK-UUU**, trnL-UAA, trnR-ACG**, trnV-GAC, trnV-UAC, trnY-GUA
|
C. bonafortunae
|
ndh, psaI, psbL
|
rpl23, rpl32, rpl36, rps15, rps16, rpo
|
ycf1, matK, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-CAU, trnI-GAU****, trnK-UUU**, trnL-UAA, trnR-ACG**, trnV-UAC**
|
C. mexicana
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ndh, psaI, rbcL, psbI, psbK
|
rpl23, rpl32, rps15, rps16, rpo
|
ycf1, matK, cemA, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-CAU, trnI-GAU****, trnK-UUU**, trnL-UAA, trnR-ACG**, trnR-UCU, trnS-GCU, trnV-UAC**
|
C. chapalana
|
ndh, psaI
|
rpl23, rpl32, rps15, rps16, rpo
|
ycf1, matK, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-CAU, trnI-GAU****, trnK-UUU**, trnL-UAA, trnR-ACG**, trnV-UAC**
|
C. costaricensis
|
ndh, psaI, atpI
|
rpl23, rpl32, rps15, rps16, rpo
|
ycf1, matK, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-GAU****, trnK-UUU**, trnL-UAA, trnR-ACG**, trnV-UAC**
|
C. australis
|
ndh, psaI
|
rpl23, rpl32, rps15, rps16, rpo
|
ycf1, matK, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-GAU****, trnK-UUU**, trnL-UAA, trnR-ACG**, trnV-UAC**
|
C. obtusiflora
|
ndh, psaI
|
rpl23, rpl32, rps15, rps16, rpo
|
ycf1, matK, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-GAU****, trnK-UUU**, trnR-ACG**, trnV-UAC**
|
C. campestris
|
ndh, psaI
|
rpl23, rpl32, rps15, rps16, rps12, rpo
|
ycf1, matK, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-GAU****, trnK-UUU**, trnL-UAA, trnR-ACG**, trnV-UAC**
|
C. pentagona
|
ndh, psaI, atpE
|
rpl23, rpl32, rps15, rps16, rpo
|
matK, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-GAU****, trnK-UUU**, trnL-UAA, trnR-ACG**, trnV-UAC**
|
C. gronovii
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ndh, psaI
|
rpl23, rpl32, rps15, rps16, rpo
|
ycf1, matK, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-GAU****, trnK-UUU**, trnL-UAA, trnR-ACG**, trnV-UAC**
|
C. gronovii (this study)
|
ndh, psaI
|
rpl23, rpl32, rps15, rps16, rpo
|
ycf1, matK, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-GAU****, trnK-UUU**, trnL-UAA, trnR-ACG**, trnV-UAC**
|
C. chinensis
|
ndh, psaI
|
rpl23, rpl32, rps15, rps16, rpo
|
matK, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-GAU****, trnK-UUU**, trnL-UAA**, trnR-ACG**, trnT-GGU, trnV-UAC**
|
C. chinensis (this study)
|
|
ndh, psaI
|
rpl23, rpl32, rps15, rps16, rpo
|
matK, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-GAU****, trnK-UUU**, trnL-UAA**, trnR-ACG**, trnT-GGU, trnV-UAC**
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C. epithymum (this study)
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Cuscuta
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ndh
|
rpl23, rps7, rps12, rps15
|
ycf1, ycf2, ycf15**
|
trnA-UGC***, trnG-UCC**, trnI-GAU***, trnK-UUU**, trnL-CAA, trnL-CAA, trnV-GUU, trnR-ACG, trnV-GAC**
|
C. europaea (this study)
|
ndh, psaA
|
rpl16, rpl2, rpl23, rps12, rps15, rps4, rps7
|
ycf1, ycf2, ycf15**, matK, ccsA
|
trnA-UGC***, trnG-UCC**, trnI-CAU, trnI-GAU**, trnK-UUU**, trnL-CAA, trnL-UAA, trnN-GUU, trnR-ACG, trnV-GAC, trnV-UAC
|
C. pedicellata
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ndh
|
rpl23, rps15, rps16, rps7, rps12, rpoC2
|
ycf1, ycf2, ycf15**
|
trnA-UGC***, trnG-UCC**, trnI-CAU, trnI-GAU***, trnK-UUU**, trnL-CAA, trnL-UAA, trnN-GUU, trnR-ACG, trnV-GAC, trnV-UAC**
|
C. approximata
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ndh
|
rpl23, rps15, rps16, rps7, rps12, rpoC2
|
ycf1, ycf2, ycf15**
|
trnA-UGC***, trnG-UCC**, trnI-CAU, trnI-GAU**, trnK-UUU**, trnL-CAA,
trnL-UAA, trnN-GUU, trnR-ACG, trnV-GAC, trnV-UAC**
|
C. africana
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Pachystigma
|
ndh, psbZ
|
rpl23, rps15, rps16, rpo
|
ycf1, ycf15**, clpP
|
trnA-UGC****, trnG-UCC**, trnI-GAU****, trnK-UUU**, trnL-UAA, trnV-UAC**
|
C. nitida
|
ndh
|
rpl23, rps15, rps16
|
ycf1, ycf15**
|
trnA-UGC****, trnG-UCC**, trnI-GAU****, trnK-UUU**, trnL-UAA, trnV-UAC**
|
C. japonica
|
Monogynella
|
ndh
|
rpl23, rps15, rps16
|
ycf1, ycf2, ycf15**
|
trnA-UGC**, trnG-UCC**, trnI-CAU, trnI-GAU**, trnK-UUU**, trnL-UAA, trnV-UAC**
|
C. japonica (this study)
|
ndh
|
rpl23, rps15, rps16
|
ycf1, ycf2, ycf15**
|
trnA-UGC**, trnG-UCC**, trnI-CAU, trnI-GAU**, trnK-UUU**, trnL-UAA, trnV-UAC**
|
C. reflexa
|
ndh
|
rpl23, rps15, rps16
|
ycf1, ycf2, ycf15**
|
trnA-UGC**, trnG-UCC, trnI-CAU, trnI-GAU**, trnK-UUU**, trnL-UAA, trnV-GAC**
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C. exaltata
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ndh
|
rpl23, rps15, rps16
|
ycf1, ycf2, ycf15**
|
trnA-UGC**, trnG-UCC, trnI-CAU, trnI-GAU**, trnK-UUU**, trnL-UAA, trnV-UAC
|