Progerin expression disrupts critical adult stem cell functions involved in tissue repair

Vascular disease is one of the leading causes of death worldwide. Vascular repair, essential for tissue maintenance, is critically reduced during vascular disease and aging. Efficient vascular repair requires functional adult stem cells unimpaired by aging or mutation. One protein candidate for reducing stem cell–mediated vascular repair is progerin, an alternative splice variant of lamin A. Progerin results from erroneous activation of cryptic splice sites within the LMNA gene, and significantly increases during aging. Mutations triggering progerin overexpression cause the premature aging disorder Hutchinson-Gilford Progeria Syndrome (HGPS), in which patients die at approximately 13-years of age due to atherosclerosis-induced disease. Progerin expression affects tissues rich in cells that can be derived from marrow stromal cells (MSCs). Studies using various MSC subpopulations and models have led to discrepant results. Using a well-defined, immature subpopulation of MSCs, Marrow Isolated Adult Multilineage Inducible (MIAMI) cells, we find progerin significantly disrupts expression and localization of self-renewal markers, proliferation, migration, and membrane elasticity. One potential treatment, farnesyltransferase inhibitor, ameliorates some of these effects. Our results confirm proposed progerin-induced mechanisms and suggest novel ways in which progerin disturbs critical stem cell functions collectively required for proper tissue repair, offering promising treatment targets for future therapies.


INTRODUCTION
farnesylated-proteins converting enzyme-1 (FACE-1), yielding mature lamin A [6,7]. Other protein-protein interactions stabilize lamin A in the nuclear membrane. Any splice variant of lamin A that causes truncation and permanent farnesylation results in a mutant of lamin A known as progerin [8,9]. Progerin is otherwise processed identically to lamin A, but the protein is truncated and permanently farnesylated due to the loss of FACE-1 cleavage site. Progerin expression delocalizes nuclear envelope proteins, disorganizes heterochromatin and nuclear pore complexes, disrupts nuclear morphology, and increases DNA damage and repair [10][11][12][13]. Inhibiting farnesylation or knocking down progerin expression with shRNA can ameliorate some of these phenotypes [12,[14][15][16].
Progerin is expressed in the general population, and its expression significantly increases with age [17,18]. In aging, the progerin splice variant is produced by the aberrant activation of various cryptic splice sites naturally present within the LMNA gene. With age, these cryptic splice sites are erroneously activated at higher rates [10]. Splicing errors observed with increased age are not selective for LMNA, but LMNA is affected by these age-induced splicing errors. Progerin is also expressed as a result of various genetic mutations that increase activation of the cryptic splice sites in the LMNA gene. Mutations leading to progerin overexpression cause a premature aging disorder known as Hutchinson-Gilford Progeria Syndrome (HGPS) [9,19].
Progerin expression in HGPS patients is most commonly produced by a de novo point mutation (C1824T, p.G608G) in exon 11, known as the "classical" HGPS mutation [5,8,9]. This silent mutation increases activation of a cryptic splice site, leading to a 50 amino acid deletion near the c-terminal end, wherein the cleavage site for FACE-1 lies. HGPS patients with this classical mutation generally die around 13 years of age, most commonly as a result of atherosclerosis that leads to fatal heart attack or stroke. Progerin (C1824T) is also expressed in atherosclerotic vascular tissues from aged, non-HGPS individuals [18]. HGPS is a severe disorder that disturbs several organ systems leading to hair loss, decreased adipose tissue, increased bone fractures, short stature, vascular stiffness, and severe atherosclerosis. It has been previously recognized that adult stem cell attrition may be a mechanism contributing to these disorders [20][21][22][23][24][25][26]. We hypothesize that progerin expression interferes with stem cell functions that are critical in vascular tissue repair. Although many tissues are significantly affected by progerin expression, we focus here on stem cell functions that are relevant for vascular repair. The vascular phenotype in HGPS patients and premature atherosclerosis resulting in death in HGPS patients demonstrate that the vascular compartment is extremely sensitive and responsive to progerin expression.
Because it is difficult to obtain marrow stromal cells (MSCs) from young HGPS patients, previous studies on the effects of progerin expression in MSCs were performed in human telomerase reverse transcriptase (hTeRT) immortalized cells [27]. Forced ectopic hTeRT overexpression can potentially mask progerin effects on self-renewal. Recent advances in cellular reprogramming have provided novel induced pluripotent stem cell (iPSC) models of HGPS which have been useful in identifying altered stem cell functions in adult stem/progenitor cells derived from these iPSCs [16,28]. Each of these models demonstrates unique and distinct perspectives on the effects of progerin expression on stem cell functions.
Here, we evaluate progerin effects on stem cell functions critical to vascular repair using a novel model of a homogenous sub-population of developmentally immature (non-immortalized) MSCs known as marrowisolated adult multilineage inducible (MIAMI) stem cells.
MIAMI cells express various self-renewal markers [29][30][31][32] that are not commonly detected in other MSC sub-populations, enabling the unique evaluation of progerin-induced alterations on selfrenewal. In addition, MIAMI cells can differentiate into cells that comprise most tissues affected in HGPS, as well as facilitate vasculogenesis and angiogenesis in an in vivo mouse model of critical limb ischemia [33]. Because MIAMI cells secrete repair-mediating cytokines, they provide an excellent model for future studies on the mechanisms of previously reported decreases in in vivo vascular repair [16]. The MIAMI cell model enables us to evaluate the effects of progerin expression during normal cell and organismal aging in a primary human stem cell population. We focus on selfrenewal, proliferation, migration, and membrane flexibility as vital, basic functions that a stem cell population requires in order to participate in more complex processes, particularly proper vascular repair.

MIAMI cells express exogenous progerin from a transgene
To investigate the effects of progerin expression on MIAMI stem cell functions, MIAMI cells from a male 20-year old normal donor were retrovirally transduced with GFP-progerin (GFP-progerin MIAMI) cells, GFPlamin A (GFP-lamin A MIAMI) cells, and a GFP-empty www.impactaging.com vector control (EV-MIAMI) cells. Transduced cells were selected by GFP + cell sorting, and appropriately express transgenes (Fig. 1A, 1B). To determine the level of transgene expression after selection, we evaluated progerin, lamin A, and GFP protein levels by western blot analyses. Untransduced MIAMI cells were used as a negative control. As expected, endogenous lamin A (70kDa) was expressed in all cell lines, exogenous GFP-lamin A (97kDa) was expressed only in GFP-lamin A MIAMI cells, exogenous GFP-progerin (92kDa) was expressed only in GFP-progerin MIAMI cells, and GFPtagged proteins (92-97kDa) were detected only in GFPprogerin MIAMI and GFP-lamin A MIAMI cells (Fig.  1C). After sorting, all cell lines were evaluated by flow cytometry to determine the percentage of cells expressing the GFP-transgenes (Fig. 1D). www.impactaging.com Progerin expression in MSCs causes nuclear blebs and invaginations, demonstrating decreased structural integrity of the nuclear membrane, as reported by others [1,13]. To determine whether progerin expression from a transgene in MIAMI cells is sufficient to cause this characteristic phenotype of progerin expressing cells, GFP-progerin and GFP-lamin A MIAMI cells were evaluated for abnormal nuclear morphology using immunofluorescent microscopy (Fig. 1B). Nuclei were scored as abnormal if they contained one or more blebs or invaginations along the membrane. GFP-progerin MIAMI cells expressed significantly higher levels of abnormal nuclei than GFP-lamin A MIAMI cells (Fig.  1E). After blocking farnesylation with farnesyltransferase inhibitor-277 (FTI-277), the number of abnormal nuclei in GFP-progerin MIAMI cells was significantly reduced (p<0.05) to levels similar to those observed in GFP-lamin A MIAMI cells (Fig. 1E).
To determine if donor age affects the normal splicing of lamin A in MIAMI cells, we quantified the mRNA levels of progerin (C1824T) transcripts in 5 MIAMI stem cell isolates, collected from non-HGPS male donors ranging in age from 7-65 years old. GFP-proge-rin MIAMI cells were used as a positive control. To evaluate progerin mRNA levels, we used primer pairs that target progerin only or progerin and lamin A, as previously described [17]. Briefly, the first portion of the forward primer binds before the cryptic splice site (1806), and the second portion of the forward primer binds after the cryptic splice site, enabling the forward primer to only bind if the cryptic splice site has been activated, yielding progerin. To visualize the transcripts, we performed qPCR using a primer pair that binds both lamin A and progerin by binding well outside of, and also spanning, the cryptic splice region. We then ran these products on an ethidium bromide gel. Since progerin is missing 150 base pairs, the two transcripts run as distinctly different lengths. Of those tested, endogenous progerin expression was observed in one MIAMI cell line that was collected from a 65-year old male donor ( Fig. 2A and 2B), demonstrating that at least the C1824T cryptic splice site in the LMNA gene can be endogenously activated in MIAMI stem cells, particularly in cells isolated from older individuals. Interestingly, these MIAMI cells appear to express progerin mRNA at levels similar to those observed in progerin transduced MIAMI cells. www.impactaging.com

Progerin expression alters self-renewal in MIAMI cells
To evaluate the effects of progerin expression on MIAMI cell self-renewal, we quantified mRNA of characteristic self-renewal markers highly expressed in MIAMI cells [29][30][31][32]. Progerin expression significantly decreased (p<0.05) the total mRNA levels of several of these self-renewal markers, specifically Oct4, hTeRT, Notch2, and Hes5. No effects were observed in the expression of Nanog, Rex1, SSEA4, and CoREST (not shown). When cells were treated with 9μM FTI, the effects of progerin expression on self-renewal mRNA were ameliorated, and most self-renewal mRNA levels in GFP-progerin MIAMI cells significantly increased (p<0.05) to levels similar to those observed in untreated GFP-lamin A MIAMI cells (Fig. 3A).
Notch2 and Oct4 are important transcription factors whose nuclear localization correlates with self-renewal maintenance of undifferentiated MSCs [34][35][36][37]. We evaluated spatial organization of Notch2 and Oct4 by immunofluorescent microscopy. Both Notch2 and Oct4 were localized to the nucleus in all control MIAMI cell lines, with little to no detectable expression in the cytoplasm. Interestingly, these transcription factors appeared to be more uniformly dispersed throughout the nucleus and cytoplasm in GFP-progerin MIAMI cells, demonstrating for the first time that progerin expression significantly alters sub-cellular distribution and nuclear localization of transcription factors Notch2 and Oct4 (Fig. 3B).

Progerin expression decreases cell proliferation
To determine whether progerin expression could alter MIAMI cell proliferation, cells were stained with an antibody against Ki67, a marker of cellular proliferation that is expressed in all active phases of the cell cycle, and is not expressed in resting cells [38]. Progerin expression significantly decreased Ki67 expression in MIAMI cells ( Fig. 4A and 4B). To further verify progerin effects on cell growth, we quantified cell numbers by employing a colorimetric assay over several days. Progerin expression significantly decreased MIAMI cell numbers, without changes in cell death (quantified by number of detached cells in culture medium) when compared to control MIAMI cells (Fig. 4C).

Progerin expression decreases cell migration and increases cell stiffness
Cellular migration (i.e., of stem cells to the site of tissue injury) is another crucial aspect of vascular repair. To determine the effect of progerin expression on stem cell migration, we performed a scratch assay on confluent MIAMI cells that express lamin A and progerin. Culture plates with confluent MIAMI cells were superficially scratched with a 2mL glass pipette tip to detach cells from a small, defined area of the cultures. Subsequently, we evaluated cell migration by quantifying the number of cells in the scratched region at 0, 24, 48, and 72 hours after scratching (Fig. 5A). Progerin expression significantly decreased MIAMI cell migration when compared to control cells, and these effects persist through 72-hours. Interestingly, FTI treatment significantly increased migration in progerin-expressing MIAMI cells, but did not affect control cell lines (Fig. 5B). www.impactaging.com Additionally, we confirmed the effects on cell migration using a transwell assay, in which MIAMI cells expressing lamin A or progerin were plated in the upper chamber of a transwell system in MIAMI media containing no FBS. MIAMI media containing 3% FBS was placed in the bottom chamber. After 24 hours, cells that had migrated through the transwell membrane were fixed, DAPI stained, and manually counted. The control cells (untransduced, vector control, and GFP-lamin A MIAMI cells) migrated through the membrane significantly more than GFP-progerin MIAMI cells (Fig.  5C).
Because lamin A interacts with cytoskeletal components such as actin [39][40][41], we examined whether progerininduced nuclear membrane alterations could cause cytoskeletal changes leading to increased cellular membrane stiffness, as a potential mechanism for decreased migration (especially as seen in the transwell assay).
Using atomic force microscopy, the Young's modulus of elasticity, or membrane stiffness, was evaluated. By quantifying applied force to the cell membrane at cytoplasmic and nuclear positions on the cell surface, we measured regional differences in stiffness.

DISCUSSION
The vascular system is under constant mechanical and inflammatory stress. Fluid pressure and sheer stress combined with inflammatory cytokines lead to damage of the arterial compartment primarily, resulting in injury and death of endothelial, vascular smooth muscle cells and pericytes in the arterial and arteriole walls. In order to repair injured arteries and maintain vascular integrity, damaged or dying cells need to be replaced in a rapid and efficient manner. This is achieved by progenitor or stem cells sensing the damage, migrating to the injured area, differentiating into the needed cell phenotype, and modulating the inflammatory milieu at the injury site. Furthermore, sufficient numbers of these cells are needed in order to maintain a vascular reparative capacity throughout adult life. Thus, these stem/progenitor cells need to self-renew and proliferate in order to maintain a suitable pool of cells available for repair.
The arterial compartment is extremely sensitive to progerin expression, demonstrated by the robust atherosclerosis and vascular diseases exhibited by HGPS patients. Progerin is also expressed in atherosclerotic vascular tissues collected from aged, non-HGPS individuals [18]. Both cases indicate a mechanistic role for progerin expression in interfering with general vascular tissue homeostasis. Efficient vascular repair that is unimpaired by disease or aging requires an adult stem cell population that can maintain their immature status (self-renewal), proliferate, detect damaged tissue and migrate toward it, and contribute to tissue repair by decreasing inflammation and differentiating into necessary cell lineages. We have shown that MIAMI cells can perform all these described functions and participate in the repair of the arterial compartment both in vivo and in vitro [27][28][29][30][31]. Interrupting any of these key stem cell functions could decrease vascular repair, increase persistent vascular damage, and result in atherosclerosis and eventual vascular accidents.
The results presented here demonstrate that progerin protein interferes with basic, critical stem cell functions that play an essential role during vascular repair. Endogenous progerin expression observed in MIAMI cells collected from a non-HGPS older donor suggest that MIAMI cells can accumulate progerin in vivo, and therefore are likely subject to the effects of progerin expression. One remarkable observation is that progerin mRNA in MIAMI cells from an aged (65-year old) donor appears to be expressed at similar levels when compared to transduced GFP-progerin MIAMI cells. Because it is likely that cells from aged individuals express progerin at lower levels than cells from HGPS patients [18], we consider our transduced GFP-Progerin MIAMI cells provide a suitable model to assess the effects of progerin expression in the context of physiological aging in a defined stem/progenitor cell population, with implications to age-related disorders during organismal aging.
Overexpression of lamin A can lead to a less severe progerin-like phenotype [27]. Because MIAMI cells already contain two copies of the wild-type lamin A gene, inserting the GFP-progerin transgene not only introduces progerin expression, but also increases absolute lamin A expression. Therefore, it is important to address any discrepancy in gene copy number. In our experiments, we normalized to lamin A transduced MIAMI cells to account for the additional third copy of the gene, either mutant or wild-type. Even when compared to cells that are expressing total lamin A at relatively equivalent levels, progerin expression still significantly affects several specific MIAMI stem cell functions that are directly relevant to physiological aging.
By reducing hTeRT levels, we expect that progerin expression promotes telomere length shortening in affected adult stem cells. This could contribute to their premature depletion. In contrast, in other MSC models of progeria where MSCs were immortalized by hTeRT forced overexpression, this effect was not evident [27], suggesting an advantage of this MIAMI cell model and demonstrating a novel finding using our system. It has been reported that shortened telomeres trigger nonspecific, global erroneous splicing. The erroneous splicing triggered by shortened telomeres increased the activation of cryptic splice sites within the LMNA gene, thus increasing progerin expression, and suggesting that progerin may actually up-regulate expression of itself during aging by shortening telomeres in adult stem cells [10]. Decreased hTeRT in progerin-expressing MSCs could interfere with vascular repair by promoting cellular senescence, however, assessing the role of endogenous progerin expression on stem cell functions as they relate to vascular repair are beyond the scope of the studies presented here.
Gene expression of hes5, a downstream effector of Notch 2, is also decreased by progerin expression. Interestingly, FTI treatment increased Hes5 expression to levels that are significantly higher than Hes5 expression observed in control cells. Because FTI-277 is non-specific [42,43], we expect that some cellular functions may be more dramatically affected than others, depending on their interactions with and regulation by other farnesylated proteins. FTI treatment restores transcript levels of almost all self-renewal markers that were decreased by progerin expression to levels similar to controls (Fig. 3A). It is encouraging to see that FTI treatment has a positive effect on selfrenewal, and this data suggests a novel mechanistic role of FTI treatment in HGPS clinical trials.
Another interesting finding is the progerin-induced alterations in the nuclear localization of transcription factors Oct4, important to MSC self-renewal [36,37], and Notch2, key to cell signaling in stem cell selfrenewal and differentiation [34,44]. By reducing the expression and nuclear localization of Notch2 and Oct4, progerin expression could interfere with vascular repair by reducing proliferative capacity, possibly resulting in depletion of the circulating stem cell population by suppressing self-renewal programs and proliferation while potentially promoting stem cell maturation.

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Altering the self-renewal profile would likely prevent the repair of vascular damage by depleting the MSC population available, which heavily participates in the repair cascade that is vital to vascular repair.
Proliferation analysis and Ki67 staining demonstrates that progerin-expressing MIAMI cells proliferate at a significantly lower rate than MIAMI cells that express only lamin A at equivalent levels. With a dwindling population due to slowed proliferation combined with decreased self-renewal, adult MIAMI cells that are directly involved in vascular repair [33] are not only functionally compromised, but depletion of such population could exacerbate their inefficiency.
MIAMI cells and other MSC populations play a critical role in endogenous tissue repair in vivo because they secrete abundant cytokines and growth factors [33,45]. To produce these reparative effects, MSCs must home to, or migrate towards, the site of tissue damage [33,46,47]. Decreased migration due to progerin and amelioration of these effects by FTI demonstrate that the permanent farnesylation of progerin plays a valuable role in MSC mobility. Cellular migration is a critical repair-mediating stem cell function, enabling stem cells to move toward, interact with, and repair damaged tissues. By decreasing MIAMI cell migration, progerin expression poses a threat to vascular tissue repair, because progerin-expressing MIAMI cells will interact less with damaged tissues. By restoring migration, FTI treatment may potentially enable more effective tissue repair in the presence of progerin by enabling MSC production of anti-inflammatory and migration-inducing cytokines in the microenvironment of regions of vascular damage. Cellular migration is driven by actin-polymerization at the leading edge of the cell, thus requiring unrestricted intracellular movement of actin molecules [48]. Because lamin A interacts with cytoskeletal components such as actin [39,40], effects of the progerin mutant on membrane stiffness and elasticity could, in part, explain decreases in cellular migration. Lamin A expression has been reported to positively correlate with tissue and matrix stiffness, and dominates over lamin B expression in MSCs [49]. Here, we explore the role of a lamin A mutant, progerin, in MSC membrane stiffness, and demonstrate that progerin modulates mechanical properties that appear central to cell migration. The membrane stiffness measurements we performed are dependent on all cellular components located beneath the cantilever tip. Therefore, cytoplasmic membrane stiffness also contributes to the stiffness reported for nuclear regions. Although the nuclear stiffness is not directly measured here, changes in nuclear stiffness are reflected in these measurements, as have been reported in other MSC populations [50], suggesting that both nuclear and cytoplasmic stiffness may be altered by progerin expression. Thus, our findings would suggest that tissue and matrix stiffness, as reported by Swift et al. [49], would be further increased in correlation to progerin expression levels.
Increased membrane stiffness provides a possible explanation for our observed decreased cellular migration. As membrane stiffness increases, cellular motility may be compromised. In addition to compromising cellular migration during vascular repair, altered membrane stiffness may interfere with cellular architecture that is required for proper MSC function. Membrane stiffness is decreased so significantly by FTI that treated GFP-progerin MIAMI cells are more elastic than treated control cells. It has been reported that permanent farnesylation of progerin is not exclusively responsible for the progerin phenotype, and the 150 base pair deletion also plays a [less significant] role [51]. Because FTI-treated GFP-progerin MIAMI cell membranes are more elastic than controls, we consider that the 150 base pair truncation may also play a role in progerin-mediated membrane stiffness. Lamin A contains several binding sites for actin, at least one of which is lost with progerin truncation [40]. Permanent farnesylation of progerin could mask the loss of this actin binding site due to the tight interaction between the progerin-farnesyl group and nuclear envelope [52][53][54] and/or gained binding partners by progerin mutant [2]. Blocking farnesylation of progerin loosens the interaction between unfarnesylated progerin and the nuclear envelope [52][53][54], suggesting that the effects of the lost progerin-actin binding site is masked by the tight farnesyl-nuclear envelope interaction observed in permanently farnesylated progerin.
It has been reported that progerin expression in vitro has little to no effect on osteogenic differentiation, but does increase stress-induced senescence in iPSCs generated from HGPS fibroblasts [16]. Conversely, alterations in osteoblastogenesis and bone metabolism have been reported as a consequence of altered lamin A/C levels in vitro and in vivo [55][56][57]. Mechanistic studies in our lab strongly suggest that progerin expression in MIAMI cells alters their osteoblastic differentiation program (manuscript in preparation). Moreover, a recent study strongly suggests a critical role of PARP1 in mediating smooth muscle cell loss in HGPS patients [26].
Together, our results demonstrate a farnesyl-dependent mechanism in which progerin expression interrupts complex stem cell processes by inducing structural alterations in the nucleus that interfere with critical, www.impactaging.com basic stem cell functions that are required for vascular repair: self-renewal, proliferation, membrane fluidity and cell migration. Progerin-induced alterations of these functions are likely to correlate with a diminished capacity for vascular repair by these cells in vivo which would have a significant relevance to organismal aging. Furthermore, FTI treatment ameliorates some effects of progerin, revealing mechanistic processes that are highly significant to clinical applications of FTI treatment in HGPS patients. However, not all progerininduced alterations in stem cell functions may be ameliorated by FTI treatment. Additionally, FTI treatment may alter specific stem cell functions involved in tissue repair independently of progerin expression, such as modulation of the local inflammatory environment. Thus, additional studies are warranted to increase our understanding of progerininduced alterations of stem cell functions. These data strongly support progerin effects on hMSC functions by demonstrating novel mechanisms (e.g., membrane stiffness, self-renewal, subcellular localization/trafficking) of progerin-induced alterations on hMSC functions required for effective vascular tissue repair.
On day 2, viral supernatants from 293T cells were discarded and replaced with MIAMI media. H3515 MIAMI cells were seeded at 500-800 cells/cm 2 in MIAMI media, modified to contain 10% FBS (to boost overnight proliferation). On days 3-4, MIAMI media on MIAMI cells was replaced with viral supernatants from transfected 293T cells. Viral supernatants were centrifuged at 400x g for 5 minutes at 4°C, filtered through 0.45μm syringe filter (4614, Pall, Port Washington, NY, USA), and supplemented with 10μg/mL protamine sulfate (P2162, Sigma). On day 5, viral supernatant from infected MIAMI cells was discarded and replaced with fresh MIAMI media. Cells were incubated in 3% O 2 at 37°C until 50-70% confluent. Transduced cells were selected by GFP-cell sorting, and re-seeded for expansion at 500 cells/cm 2 .
Real time PCR (qPCR). RNA was collected from cells using an RNAqueous RNA isolation kit (AM1912, Life Technologies, Grand Island, NY, USA) and precipitated for at least 12 hours at -80°C. RNA precipitate was resuspended in 15μL elution buffer and then quantified using a Nanodrop spectrophotometer. cDNA was synthesized and suspended to a final concentration of 10ng/μL. qPCR was performed with Brilliant II Sybr Green PCR Master Mix (#600834, Agilent Technologies, Santa Clara CA, USA) using 100ng cDNA per reaction. qPCR results were analyzed and gene expression was normalized to EF1α and/or RPL13α [58].
Cell Proliferation Analysis. The colorimetric assay CellTiter 96® AQueous One Solution Cell Proliferation Assay (G3580, Promega) was used to evaluate proliferation. MIAMI cells were plated at 500 cells/cm 2 (8 wells per cell line). On the day of analysis cells were incubated with 100μL MIAMI media supplemented with 20μL Promega celltiter solution at 37°C for 1-4h. Miami media:Promega celltiter solution was used as a blank. Plates were read at 490nm.
Immunocytochemistry. MIAMI cells were fixed in 4% paraformaldehyde for 15 minutes at room temperature, rinsed 3x 5 minutes in PBS, and stored in sterile water at 4°C. Cells were permeabilized with 0.1% triton-x for 5-10 minutes at room temperature, blocked in 3% PBS-BSA for 30 minutes at room temperature and then stained with primary antibodies against GFP (AB3080, Millipore), Notch 2 (Ab8926, Abcam), Oct4 (MAB4401, Millipore), Lamin A (MAB3540, Millipore), Progerin (#05-1231, Millipore), Ki-67 (KI67-MM1-L-CE, Leica Biosystems, Buffalo Grove, IL,USA) for 1h at room temperature. Rinsed cells were incubated with fluorescently labeled secondary antibodies for 1h at room temperature. Coverslips were mounted on glass slides using DAPI mounting media. Cells not plated on coverslips were incubated with DAPI antibody for 15 minutes at room temperature prior to imaging.
Transwell Migration Assay. MIAMI cells (1.5-2.5x10 4 ) were suspended in 100μL MIAMI media containing no FBS, and seeded into transwell inserts (8μm pore size membrane; #3422, Corning Costar, Tewksbury MA, USA). The transwell inserts were placed into 24-well plates containing 400μL of MIAMI media containing 3% FBS and incubated at 37°C, 3% O 2 for 22 hours. The transwells were removed from the 24-well plates, and remaining cells were wiped from the top of the membrane. The bottom side of the membrane was fixed with 4% paraformaldehyde for 15 minutes at room temperature and stained with DAPI. Cell migration was measured by counting all DAPI-stained cells present on the bottom of the transwell membrane using a fluorescence microscope.
Scratch Assay. MIAMI cells (20,000 cells/cm 2 ) were seeded in 12 well plates and were allowed to attach overnight at 37°C, in 3% O 2 . After 24-hours (cells were approximately 100% confluent) a 2mL pipette tip was continuously scraped across the diameter of the well, creating a clear lesion in which no cells were present. Cells were washed twice before adding fresh MIAMI media.
Atomic Force Microscopy. MIAMI cells (1,000 cells/cm 2 ) were seeded in MIAMI media in 35mm x 10mm culture dishes (Sarsdedt). Cells were incubated at 37°C, 3% O 2 until approximately 50% confluent. Elasticity was then measured using a custom-built nanoindenter [50,59]. A pyramidal, AFM cantilever tip (0.01N/m, silicon nitride, 20nm tip radius, MLCT series, Bruker AFM Probes, Camarillo, CA, USA) was used to indent the cell. The measurements were conducted using a cantilever approach and retraction speed of 1.5μm/s and a maximal indentation force of 60nN. The recordings were repeated at least 15 times per cell in both the nuclear and cytoplasmic regions. The Bilodeau model for a pyramidal indenter was used to calculate Young's modulus of elasticity. For FTItreated cells, drug in FBS-free media was added when cells were approximately 50% confluent. Media was changed every other day for four days, at which time the elasticity was measured. Cells were washed and placed in DMEM during measurements.
www.impactaging.com Statistical Analysis. All data sets were tested for significance using Student's t-test (two-tailed, two sample, unequal variance). Statistical significance was determined by P-values less than 0.05, unless otherwise noted.