Plant Soil Environ., 2020, 66(10):493-499 | DOI: 10.17221/320/2020-PSE

Crop rotation alleviates replant failure in Panax notoginseng (Burkill) F.H. Chen by changing the composition but not the structure of the microbial communityOriginal Paper

Binbin Tang1,2,3, Yaojun Dong1,2,3, Kai Wu*,1,2,3, Mimi He1,2,3, Jianfeng Liu1,2,3, Fang Yin1,2,3, Wudi Zhang1,2,3, Ming Gong*,1
1 Yunnan Normal University, Kunming, P.R. China
2 Yunnan Research Center of Biogas Technology and Engineering, Yunnan Normal University, Kunming, P.R. China
3 Jilin Dongsheng Institute of Biomass Energy Engineering, Tonghua, P.R. China

Consecutive monocropping with sanqi (Panax notoginseng (Burkill) F.H. Chen) can increase the abundances of pathogens in soil, resulting in soil sickness. Crop rotation is one way to alleviate this problem. In the present study, there were no differences in microbial structure or bacterial alpha diversity among one-year monocropping soil, one-year rotation soil, and ten-year rotation soil. However, monocropping practices decreased fungal alpha diversity. The relative abundance of copiotrophic bacteria decreased after sanqi monocropping, while that of oligotrophic bacteria increased. Ten-year rotation significantly increased the abundance of potential beneficial bacterial genera. Moreover, the potential beneficial fungal genera were also enriched by rotation for ten years. Furthermore, the relative abundance of Cylindrocarpon spp. decreased dramatically after a ten-year rotation. The results of pot experiments showed that disease incidences after ten-year rotation were significantly decreased among the three treatments. Hence, we suggested that pausing sanqi cultivation for a long time can increase the abundance of potentially beneficial soil bacteria and fungi that are helpful for overcoming soil sickness in sanqi cultivation.

Keywords: medicinal herb; microflora; rotation; phytopathogen; microorganism; pathogenic fungi

Published: October 31, 2020  Show citation

ACS AIP APA ASA Harvard Chicago IEEE ISO690 MLA NLM Turabian Vancouver
Tang B, Dong Y, Wu K, He M, Liu J, Yin F, et al.. Crop rotation alleviates replant failure in Panax notoginseng (Burkill) F.H. Chen by changing the composition but not the structure of the microbial community. CAAS Agricultural Journals. 2020;66(10):493-499. doi: 10.17221/320/2020-PSE.
Download citation

References

  1. Badri D.V., Vivanco J.M. (2009): Regulation and function of root exudates. Plant, Cell and Environment, 32: 666-681. Go to original source...
  2. Berendsen R.L., Pieterse C.M.J., Bakker P.A.H.M. (2012): The rhizosphere microbiome and plant health. Trends in Plant Science, 17: 478-486. Go to original source... Go to PubMed...
  3. Chaparro J.M., Sheflin A.M., Manter D.K., Vivanco J.M. (2012): Manipulating the soil microbiome to increase soil health and plant fertility. Biology and Fertility of Soils, 48: 489-499. Go to original source...
  4. Durairaj K., Velmurugan P., Park J.-H., Chang W.-S., Park Y.-J., Senthilkumar P., Choi K.-M., Lee J.-H., Oh B.-T. (2018): An investigation of biocontrol activity Pseudomonas and Bacillus strains against Panax ginseng root rot fungal phytopathogens. Biological Control, 125: 138-146. Go to original source...
  5. Fan Z.Y., Miao C.P., Qiao X.G., Zheng Y.K., Chen H.H., Chen Y.W., Xu L.H., Zhao L.X., Guan H.L. (2016): Diversity, distribution, and antagonistic activities of rhizobacteria of Panax notoginseng. Journal of Ginseng Research, 40: 97-104. Go to original source... Go to PubMed...
  6. FAO (2006): World Reference Base for Soil Resources 2006. A Framework for International Classification, Correlation and Communication. World Soil Resources Reports 103. Rome, Food and Agriculture Organisation.
  7. Fu L., Penton C.R., Ruan Y.Z., Shen Z.Z., Xue C., Li R., Shen Q.R. (2017): Inducing the rhizosphere microbiome by biofertilizer application to suppress banana Fusarium wilt disease. Soil Biology and Biochemistry, 104: 39-48. Go to original source...
  8. Gentry L.F., Ruffo M.L., Below F.E. (2013): Identifying factors controlling the continuous corn yield penalty. Agronomy Journal, 105: 295-303. Go to original source...
  9. Jiang J.L., Yu M., Hou R.P., Li L., Ren X.M., Jiao C.J., Yang L.J., Xu H. (2019): Changes in the soil microbial community are associated with the occurrence of Panax quinquefolius L. root rot diseases. Plant and Soil, 438: 143-156. Go to original source...
  10. Jiao X.L., Zhang X.S., Lu X.H., Qin R., Bi Y.M., Gao W.W. (2019): Effects of maize rotation on the physicochemical properties and microbial communities of American ginseng cultivated soil. Scientific Reports, 9: 8615. Go to original source... Go to PubMed...
  11. Jin X., Wang J., Li D.L., Wu F.Z., Zhou X.G. (2019a): Rotations with Indian Mustard and Wild Rocket suppressed cucumber Fusarium wilt disease and changed rhizosphere bacterial communities. Microorganisms, 7: 57. Go to original source... Go to PubMed...
  12. Jin X., Zhang J.H., Shi Y.J., Wu F.Z., Zhou X.G. (2019b): Green manures of Indian mustard and wild rocket enhance cucumber resistance to Fusarium wilt through modulating rhizosphere bacterial community composition. Plant and Soil, 441: 283-300. Go to original source...
  13. Kim J.-H. (2012): Cardiovascular diseases and Panax ginseng: a review on molecular mechanisms and medical applications. Journal of Ginseng Research, 36: 16-26. Go to original source... Go to PubMed...
  14. Kõljalg U., Nilsson R.H., Abarenkov K., Tedersoo L., Taylor A.F.S., Bahram M., Bates S.T., Bruns T.D., Bengtsson-Palme J., Callaghan T.M., Douglas B., Drenkhan T., Eberhardt U., Dueñas M., Grebenc T., Griffith G.W., Hartmann M., Kirk P.M., Kohout P., Larsson E., Lindahl B.D., Lücking R., Martín M.P., Matheny M.B., Nguyen N.H., Niskanen T., Oja J., Peay K.G., Peintner U., Peterson M., Põldmaa K., Saag L., Schüβler A., Scott J.A., Senée C., Smith M.E., Suija A., Taylor D.L., Telleria M.T., Weiss M., Larsson K.-H. (2013): Towards a unified paradigm for sequencebased identification of fungi. Molecular Ecology, 22: 5271-5277. Go to original source... Go to PubMed...
  15. Larkin R.P. (2008): Relative effects of biological amendments and crop rotations on soil microbial communities and soilborne diseases of potato. Soil Biology and Biochemistry, 40: 1341-1351. Go to original source...
  16. Larkin R.P., Lynch R.P. (2018): Use and effects of different Brassica and other rotation crops on soilborne diseases and yield of potato. Horticulturae, 4: 37. Go to original source...
  17. Li X.G., De Boer W., Zhang Y.N., Ding C.F., Zhang T.L., Wang X.X. (2018): Suppression of soil-borne Fusarium pathogens of peanut by intercropping with the medicinal herb Atractylodes lancea. Soil Biology and Biochemistry, 116: 120-130. Go to original source...
  18. Li Y.L., Dai S.Y., Wang B.Y., Jiang Y.T., Ma Y.Y., Pan L.L., Wu K., Huang X.Q., Zhang J.B., Cai Z.C., Zhao J. (2020): Autotoxic ginsenoside disrupts soil fungal microbiomes by stimulating potentially pathogenic microbes. Applied and Environmental Microbiology. doi: 10.1128/AEM.00130-20 Go to original source... Go to PubMed...
  19. McDonald D., Price M.N., Goodrich J., Nawrocki E.P., DeSantis T.Z., Probst A., Andersen G.L., Knight R., Hugenholtz P. (2012): An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. The ISME Journal, 6: 610-618. Go to original source... Go to PubMed...
  20. Miao C.P., Mi Q.L., Qiao X.G., Zheng Y.K., Chen Y.W., Xu L.H., Guan H.L., Zhao L.X. (2016): Rhizospheric fungi of Panax notoginseng: diversity and antagonism to host phytopathogens. Journal of Ginseng Research, 40: 127-134. Go to original source... Go to PubMed...
  21. Pianka E.R. (1970): On r- and K-selection. American Naturalist, 104: 592-597. Go to original source...
  22. Sang M.K., Kim K.D. (2012): The volatile-producing Flavobacterium johnsoniae strain GSE09 shows biocontrol activity against Phytophthora capsici in pepper. Journal of Applied Microbiology, 113: 383-398. Go to original source... Go to PubMed...
  23. Song M.J., Yun H.Y., Kim Y.H. (2014): Antagonistic Bacillus species as a biological control of ginseng root rot caused by Fusarium cf. incarnatum. Journal of Ginseng Research, 38: 136-145. Go to original source... Go to PubMed...
  24. Tan Y., Cui Y.S., Li H.Y., Kuang A.X., Li X.R., Wei Y.L., Ji X.L. (2017): Rhizospheric soil and root endogenous fungal diversity and composition in response to continuous Panax notoginseng cropping practices. Microbiological Research, 194: 10-19. Go to original source... Go to PubMed...
  25. Xiong W., Guo S., Jousset A., Zhao Q.Y., Wu H.S., Li R., Kowalchuk G.A., Shen Q.R. (2017): Bio-fertilizer application induces soil suppressiveness against Fusarium wilt disease by reshaping the soil microbiome. Soil Biology and Biochemistry, 114: 238-247. Go to original source...
  26. Yang M., Zhang X., Xu Y., Mei X., Jiang B., Liao J., Yin Z., Zheng J., Zhao Z., Fan L. (2015): Autotoxic ginsenosides in the rhizosphere contribute to the replant failure of Panax notoginseng. PLoS One, 10: e0118555. Go to original source... Go to PubMed...
  27. Ye X.F., Li Z.K., Luo X., Wang W.H., Li Y.K., Li R., Zhang B., Qiao Y., Zhou J., Fan J.Q., Wang H., Huang Y., Cao H., Cui Z.L., Zhang R.F. (2020): A predatory myxobacterium controls cucumber Fusarium wilt by regulating the soil microbial community. Microbiome, 8: 49. Go to original source... Go to PubMed...
  28. Zhao J., Li Y.L., Wang B.Y., Huang X.Q., Yang L., Lan T., Zhang J.B., Cai Z.C. (2017): Comparative soil microbial communities and activities in adjacent Sanqi ginseng monoculture and maizeSanqi ginseng systems. Applied Soil Ecology, 120: 89-96. Go to original source...
  29. Zhao Q., Xiong W., Xing Y., Sun Y., Lin X., Dong Y. (2018): Longterm coffee monoculture alters soil chemical properties and microbial communities. Scientific Reports, 8: 6116. Go to original source... Go to PubMed...

This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International (CC BY NC 4.0), which permits non-comercial use, distribution, and reproduction in any medium, provided the original publication is properly cited. No use, distribution or reproduction is permitted which does not comply with these terms.