Plant Soil Environ., 2018, 64(8):393-399 | DOI: 10.17221/231/2018-PSE

Nitrate addition inhibited methanogenesis in paddy soils under long-term managementsOriginal Paper

Jun WANG1,3, Tingting XU1, Lichu YIN2, Cheng HAN1,4, Huan DENG1,4, Yunbin JIANG*,1, Wenhui ZHONG1,4
1 Jiangsu Provincial Key Laboratory of Materials Cycling and Pollution Control, Nanjing Normal University, Nanjing, P.R. China
2 College of Resources and Environment, Hunan Agricultural University, Changsha, P.R. China
3 Shandong Provincial Key Laboratory of Water and Soil Conservation and Environmental
4 Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, Nanjing, P.R. China

Rice fields are a major source of atmospheric methane (CH4). Nitrate has been approved to inhibit CH4 production from paddy soils, while fertilization as well as water management can also affect the methanogenesis. It is unknown whether nitrate addition might result in shifts in the methanogenesis and methanogens in paddy soils influenced by different practices. Six paddy soils of different fertilizer types and groundwater tables were collected from a long-term experiment site. CH4 production rate and methanogenic archaeal abundance were determined with and without nitrate addition in the microcosm incubation. The structure of methanogenic archaeal community was analysed using the PCR-DGGE (polymerase chain reaction denaturing gradient gel electrophoresis) and pyrosequencing. The results showed that nitrate addition significantly decreased the CH4 production rate and methanogenic archaeal abundance in all six paddy soils by 70-100% and 54-88%, respectively. The quantity, position and relative intensity of DGGE bands exhibited differences when nitrate was added. Nitrate suppressed the growth of methanogenic archaeal species affiliated to Methanosaetaceae, unidentified Euryarchaeota, Thaumarchaeota and Methanosarinaceae. The universal inhibition of nitrate addition on the methanogenesis and methanogens can be adopted as a practice of mitigating CH4 emission in paddy soils under different fertilization and water managements.

Keywords: Oryza sativa L.; mineral fertilizer; organic manure; biomethanation; archaeal 16S rRNA gene

Published: August 31, 2018  Show citation

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WANG J, XU T, YIN L, HAN C, DENG H, JIANG Y, ZHONG W. Nitrate addition inhibited methanogenesis in paddy soils under long-term managements. Plant Soil Environ.. 2018;64(8):393-399. doi: 10.17221/231/2018-PSE.
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References

  1. Banger K., Tian H.Q., Lu C.Q. (2012): Do nitrogen fertilizers stimulate or inhibit methane emissions from rice fields? Global Change Biology, 18: 3259-3267. Go to original source... Go to PubMed...
  2. Boone D.R., Whitman W.B., Rouvière P. (1993): Diversity and taxonomy of methanogens. In: Ferry J.G. (ed.): Methanogenesis. Boston, Springer, 35-80. Go to original source...
  3. Cai Z.C., Xing G.X., Yan X.Y., Xu H., Tsuruta H.R., Yagi K., Minami K. (1997): Methane and nitrous oxide emissions from rice paddy fields as affected by nitrogen fertilisers and water management. Plant and Soil, 196: 7-14. Go to original source...
  4. Choi P.S., Naal Z., Moore C., Casado-Rivera E., Abruña H.D., Helmann J.D., Shapleigh J.P. (2006): Assessing the impact of denitrifier-produced nitric oxide on other bacteria. Applied and Environmental Microbiology, 72: 2200-2205. Go to original source... Go to PubMed...
  5. Conrad R. (2002): Control of microbial methane production in wetland rice fields. Nutrient Cycling in Agroecosystems, 64: 59-69. Go to original source...
  6. Dubey S.K., Singh A., Watanabe T., Asakawa S., Singla A., Arai H., Inubushi K. (2014): Methane production potential and methanogenic archaeal community structure in tropical irrigated Indian paddy soils. Biology and Fertility of Soils, 50: 369-379. Go to original source...
  7. Fageria N.K., Baligar V.C. (2005): Enhancing nitrogen use efficiency in crop plants. Advances in Agronomy, 88: 97-185. Go to original source...
  8. Feng Y.Z., Xu Y.P., Yu Y.C., Xie Z.B., Lin X.G. (2012): Mechanisms of biochar decreasing methane emission from Chinese paddy soils. Soil Biology and Biochemistry, 46: 80-88. Go to original source...
  9. Hadi A., Inubushi K., Yagi K. (2010): Effect of water management on greenhouse gas emissions and microbial properties of paddy soils in Japan and Indonesia. Paddy and Water Environment, 8: 319-324. Go to original source...
  10. Hernández M., Conrad R., Klose M., Ma K., Lu Y.H. (2017): Structure and function of methanogenic microbial communities in soils from flooded rice and upland soybean fields from Sanjiang plain, NE China. Soil Biology and Biochemistry, 105: 81-91. Go to original source...
  11. Kludze H.K., DeLaune R.D. (1995): Gaseous exchange and wetland plant response to soil redox intensity and capacity. Soil Science Society of America Journal, 59: 939-945. Go to original source...
  12. Lindau C.W., Bollich P.K. (1993): Methane emissions from Louisiana first and Ratoon crop rice. Soil Science, 156: 42-48. Go to original source...
  13. Linquist B.A., Adviento-Borbe M.A., Pittelkow C.M., van Kessel C., van Groenigen K.J. (2012): Fertilizer management practices and greenhouse gas emissions from rice systems: A quantitative review and analysis. Field Crops Research, 135: 10-21. Go to original source...
  14. Lu Y.H., Wassmann R., Neue H.-U., Huang C.Y. (2000): Dissolved organic carbon and methane emissions from a rice paddy fertilized with ammonium and nitrate. Journal of Environmental Quality, 29: 1733-1740. Go to original source...
  15. Roy R., Conrad R. (1999): Effect of methanogenic precursors (acetate, hydrogen, propionate) on the suppression of methane production by nitrate in anoxic rice field soil. FEMS Microbiology Ecology, 28: 49-61. Go to original source...
  16. Scheer C., Wassmann R., Kienzler K., Ibragimov N., Lamers J.P.A., Martius C. (2008): Methane and nitrous oxide fluxes in annual and perennial land-use systems of the irrigated areas in the Aral Sea Basin. Global Change Biology, 14: 2454-2468. Go to original source...
  17. Scheid D., Stubner S., Conrad R. (2003): Effects of nitrate- and sulfate-amendment on the methanogenic populations in rice root incubations. FEMS Microbiology Ecology, 43: 309-315. Go to original source... Go to PubMed...
  18. Snyder C.S., Bruulsema T.W., Jensen T.L., Fixen P.E. (2009): Review of greenhouse gas emissions from crop production systems and fertilizer management effects. Agriculture, Ecosystems and Environment, 133: 247-266. Go to original source...
  19. Tamura K., Dudley J., Nei M., Kumar S. (2007): MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24: 1596-1599. Go to original source... Go to PubMed...
  20. Watanabe T., Asakawa S., Nakamura A., Nagaoka K., Kimura M. (2004): DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil. FEMS Microbiology Letter, 232: 153-163. Go to original source... Go to PubMed...
  21. Watanabe T., Kimura M., Asakawa S. (2007): Dynamics of methanogenic archaeal communities based on rRNA analysis and their relation to methanogenic activity in Japanese paddy field soils. Soil Biology and Biochemistry, 39: 2877-2887. Go to original source...
  22. Yagi K., Tsuruta H., Kanda K.I., Minami K. (1996): Effect of water management on methane emission from a Japanese rice paddy field: Automated methane monitoring. Global Biogeochemical Cycles, 10: 255-267. Go to original source...
  23. Yuan Y., Conrad R., Lu Y. (2009): Responses of methanogenic archaeal community to oxygen exposure in rice field soil. Environmental Microbiology Reports, 1: 347-354. Go to original source... Go to PubMed...
  24. Yuan Q., Lu Y. (2009): Response of methanogenic archaeal community to nitrate addition in rice field soil. Environmental Microbiology Reports, 1: 362-369. Go to original source... Go to PubMed...
  25. Zhong W.H., Cai L.C., Wei Z.G., Xue H.J., Han C., Deng H. (2017): The effects of closed circuit microbial fuel cells on methane emissions from paddy soil vary with straw amount. Catena, 154: 33-39. Go to original source...
  26. Zumft W.G. (1993): The biological role of nitric oxide in bacteria. Archives of Microbiology, 160: 253-264. Go to original source... Go to PubMed...

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