For an FPGA-based heterogeneous multicore platform, we present the design methodology to reduce the total processing time considering data-transfer. The reconfigurability of recent FPGAs with hard CPU cores allows us to realize a single-chip heterogeneous processor optimized for a given application. The major problem in designing such heterogeneous processors is data-transfer between CPU cores and accelerator cores. The total processing time with data-transfers is modeled considering the overlap of computation time and data-transfer time, and optimal design parameters are searched for.