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Pyrosequencing®

A Simple Method for Accurate Genotyping

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Pyrosequencing® Protocols

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 373))

Abstract

Pharmacogenetic research benefits first-hand from the abundance of information provided by the completion of the Human Genome Project. With such a tremendous amount of data available comes an explosion of genotyping methods. Pyrosequencing® is one of the most thorough yet simple methods to date used to analyze polymorphisms. It also has the ability to identify tri-allelic, indels, short-repeat polymorphisms, along with determining allele percentages for methylation or pooled sample assessment. In addition, there is a standardized control sequence that provides internal quality control. This method has led to rapid and efficient single-nucleotide polymorphism evaluation including many clinically relevant polymorphisms. The technique and methodology of Pyrosequencing is explained in this chapter.

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References

  1. Sachidanandam, R., Weissman, D., Schmidt, S. C., et al. (2001) A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409, 928–933.

    Article  CAS  PubMed  Google Scholar 

  2. Ahluwalia, R., Freimuth, R., McLeod, H. L., and Marsh, S. (2003) Use of pyrosequencing to detect clinically relevant polymorphisms in dihydropyrimidine dehydrogenase. Clin. Chem. 49, 1661–1664.

    Article  CAS  PubMed  Google Scholar 

  3. Garsa, A. A., McLeod, H. L., and Marsh, S. (2005) CYP3A4 and CYP3A5 genotyping by Pyrosequencing. BMC Med Genet. 6, 19.

    Article  PubMed  Google Scholar 

  4. Mathijssen, R. H., Marsh, S., Karlsson, M. O., et al. (2003) Irinotecan pathway genotype analysis to predict pharmacokinetics. Clin. Cancer Res. 9, 3246–3253.

    CAS  PubMed  Google Scholar 

  5. Marsh, S., King, C. R., Garsa, A. A., and McLeod, H. L. (2005) Pyrosequencing of clinically relevant polymorphisms. Methods Mol. Biol. 311, 97–114.

    CAS  PubMed  Google Scholar 

  6. King, C. R., Yu, J., Freimuth, R. R., McLeod, H. L., and Marsh, S. (2005) Interethnic variability of ERCC2 polymorphisms. Pharmacogenomics J. 5, 54–59.

    Article  CAS  PubMed  Google Scholar 

  7. Rose, C. M., Marsh, S., Ameyaw, M. M., and McLeod, H. L. (2003) Pharmacogenetic analysis of clinically relevant genetic polymorphisms. Methods Mol Med. 85, 225–237.

    CAS  PubMed  Google Scholar 

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© 2007 Humana Press Inc.

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King, C.R., Scott-Horton, T. (2007). Pyrosequencing®. In: Walker, J.M., Marsh, S. (eds) Pyrosequencing® Protocols. Methods in Molecular Biology™, vol 373. Humana Press. https://doi.org/10.1385/1-59745-377-3:39

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  • DOI: https://doi.org/10.1385/1-59745-377-3:39

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-645-0

  • Online ISBN: 978-1-59745-377-6

  • eBook Packages: Springer Protocols

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