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Identification and comparison of key RNA interference machinery from western corn rootworm, fall armyworm, and southern green stink bug

Fig 2

Properties of core mi- and siRNA pathway double-stranded RNA binding proteins in WCR, FAW, and SGSB.

(A) The predicted protein domains encoded by the Pasha-PA, LOQS-PB, and R2D2 transcripts of A. pisum (Api: XP_001947403.1, XP_016657757.1), B. mori (Bmo: XP_012552270.1, XP_012550849.1, NP_001182007.1), C. elegans (Cel: NP_001293461.1, NP_499265.1), D. melanogaster (Dme: NP_651879.1, NP_609646.1, NP_609152.1), D. virgifera virgifera (WCR–Dvi: MG225419, MG225420, MG225423), H. sapiens (Has: NP_073557.3, NP_599150.1), N. viridula (SGSB–Nvi: MG225448, MG225451, MG225453), S. frugiperda (FAW–Sfr: MG225432, MG225435, MG225438), and T. castaneum (Tca: XP_971282.1, XP_966668.1, NP_001128425.1). Predicted domains include two to three DSRMs (PF00035) and a WW (PF00397). E-values for domains predicted in WCR, FAW, and SGSB range from 1.5×10−3 to 9.2×10−15. (B) Maximum likelihood phylogenetic tree topology of translated dsRBP protein-coding sequences (1000 bootstrap replications). Black symbols above each entry indicate phylogenetic order as follows: circles (●) for Diptera, squares (■) for Lepidoptera, diamonds (◆) for Coleoptera, teardrops (💧) for Hemiptera, xrhombus (❖) for Primate, and sunburst (✸) for Rhabditida.

Fig 2

doi: https://doi.org/10.1371/journal.pone.0203160.g002