Analysis of Domain Architecture and Phylogenetics of Family 2 Glycoside Hydrolases (GH2)
Fig 3
Phylogenetic analysis of the GH2C domain.
The tree was calculated by Maximum Likelihood method based on the JTT matrix-based model [21] condensed at < 50% bootstrap support. The analysis involved a selection of 380 amino acid sequences for the different DAs. The tree was drawn using FigTree software (http://tree.bio.ed.ac.uk/software/figtree/). Numbers indicate the DA type. The asterisk marks the subtree further analysed in Fig 4. Sectors corresponding to a single DA type are colored in turquoise (DA type 1), purple (DA type 2), blue (DA type 3), red (DA type 4). Cluster 5* is colored in light grey. Sectors including mixed DA types are colored in dark grey.