A New Exhaustive Method and Strategy for Finding Motifs in ChIP-Enriched Regions
Figure 3
FMotif sensitivity was measured using an NRSF-positive TFBS set (NRSF/qPCR), which was composed of 83 binding sites verified by qPCR [2], four yeast DNA-binding TFs (Reb1, Gal4, Phd1, and Rap1), and one human TF (CTCF) ChIP-exo data sets. Results from CisFinder and published motifs in literature are shown for comparison. Column definitions are the same as those in Figure 1.